public override async Task <Object> Process(String content)
{
//TODO Parse string content to chunks object
List <Chunck> chuncks = ParseRawDatas(content);
int resPaire = await totalPaire(chuncks);
CountBases resOccur = await totalOccurence(chuncks);
return(resOccur);
}
public async Task <CountBases> totalOccurence(List <Chunck> chuncks)
{
CountBases countBases = new CountBases();
Console.WriteLine("Je suis module 1 : totalOccurence");
Parallel.ForEach(chuncks, (chunck) =>
{
if (chunck.genotype.Length > 0)
{
switch (chunck.genotype[0])
{
case 'A':
lock (countBases)
{
countBases.basesA++;
}
break;
case 'T':
lock (countBases)
{
countBases.basesT++;
}
break;
case 'G':
lock (countBases)
{
countBases.basesG++;
}
break;
case 'C':
lock (countBases)
{
countBases.basesC++;
}
break;
default:
lock (countBases)
{
countBases.basesUndefine++;
}
break;
}
}
if (chunck.genotype.Length > 1)
{
switch (chunck.genotype[1])
{
case 'A':
lock (countBases)
{
countBases.basesA++;
}
break;
case 'T':
lock (countBases)
{
countBases.basesT++;
}
break;
case 'G':
lock (countBases)
{
countBases.basesG++;
}
break;
case 'C':
lock (countBases)
{
countBases.basesC++;
}
break;
default:
lock (countBases)
{
countBases.basesUndefine++;
}
break;
}
}
});
return(countBases);
}
