private static IList<StudyIntegrityQueueUid> LoadDuplicateSopUid(DuplicateSopReceivedQueue entry)
{
IStudyIntegrityQueueUidEntityBroker broker =
HttpContextData.Current.ReadContext.GetBroker<IStudyIntegrityQueueUidEntityBroker>();
StudyIntegrityQueueUidSelectCriteria criteria = new StudyIntegrityQueueUidSelectCriteria();
criteria.StudyIntegrityQueueKey.EqualTo(entry.GetKey());
return broker.Find(criteria);
}
public StudyIntegrityQueueUidSelectCriteria(StudyIntegrityQueueUidSelectCriteria other)
: base(other)
{}
public static ReconcileDetails CreateReconcileDetails(StudyIntegrityQueueSummary item)
{
ReconcileDetails details = item.TheStudyIntegrityQueueItem.StudyIntegrityReasonEnum.Equals(
StudyIntegrityReasonEnum.InconsistentData)
? new ReconcileDetails(item.TheStudyIntegrityQueueItem)
: new DuplicateEntryDetails(item.TheStudyIntegrityQueueItem);
Study study = item.StudySummary.TheStudy;
details.StudyInstanceUid = study.StudyInstanceUid;
//Set the demographic details of the Existing Patient
details.ExistingStudy = new ReconcileDetails.StudyInfo();
details.ExistingStudy.StudyInstanceUid = item.StudySummary.StudyInstanceUid;
details.ExistingStudy.AccessionNumber = item.StudySummary.AccessionNumber;
details.ExistingStudy.StudyDate = item.StudySummary.StudyDate;
details.ExistingStudy.Patient.PatientID = item.StudySummary.PatientId;
details.ExistingStudy.Patient.Name = item.StudySummary.PatientsName;
details.ExistingStudy.Patient.Sex = study.PatientsSex;
details.ExistingStudy.Patient.IssuerOfPatientID = study.IssuerOfPatientId;
details.ExistingStudy.Patient.BirthDate = study.PatientsBirthDate;
details.ExistingStudy.Series = CollectionUtils.Map(
study.Series.Values,
delegate(Series theSeries)
{
var seriesDetails = new ReconcileDetails.SeriesDetails
{
Description = theSeries.SeriesDescription,
SeriesInstanceUid = theSeries.SeriesInstanceUid,
Modality = theSeries.Modality,
NumberOfInstances = theSeries.NumberOfSeriesRelatedInstances,
SeriesNumber = theSeries.SeriesNumber
};
return seriesDetails;
});
details.ConflictingImageSet = item.QueueData.Details;
details.ConflictingStudyInfo = new ReconcileDetails.StudyInfo();
if (item.QueueData.Details != null)
{
// extract the conflicting study info from Details
details.ConflictingStudyInfo.AccessionNumber = item.QueueData.Details.StudyInfo.AccessionNumber;
details.ConflictingStudyInfo.StudyDate = item.QueueData.Details.StudyInfo.StudyDate;
details.ConflictingStudyInfo.StudyInstanceUid = item.QueueData.Details.StudyInfo.StudyInstanceUid;
details.ConflictingStudyInfo.StudyDate = item.QueueData.Details.StudyInfo.StudyDate;
details.ConflictingStudyInfo.Patient = new ReconcileDetails.PatientInfo
{
BirthDate =
item.QueueData.Details.StudyInfo.PatientInfo.
PatientsBirthdate,
IssuerOfPatientID =
item.QueueData.Details.StudyInfo.PatientInfo.
IssuerOfPatientId,
Name = item.QueueData.Details.StudyInfo.PatientInfo.Name,
PatientID =
item.QueueData.Details.StudyInfo.PatientInfo.
PatientId,
Sex = item.QueueData.Details.StudyInfo.PatientInfo.Sex
};
details.ConflictingStudyInfo.Series =
CollectionUtils.Map(
item.QueueData.Details.StudyInfo.Series,
delegate(SeriesInformation input)
{
var seriesDetails = new ReconcileDetails.SeriesDetails
{
Description = input.SeriesDescription,
Modality = input.Modality,
SeriesInstanceUid = input.SeriesInstanceUid,
NumberOfInstances = input.NumberOfInstances
};
return seriesDetails;
});
}
else
{
// Extract the conflicting study info from StudyData
// Note: Not all fields are available.
ImageSetDescriptor desc =
ImageSetDescriptor.Parse(item.TheStudyIntegrityQueueItem.StudyData.DocumentElement);
string value;
if (desc.TryGetValue(DicomTags.AccessionNumber, out value))
details.ConflictingStudyInfo.AccessionNumber = value;
if (desc.TryGetValue(DicomTags.StudyDate, out value))
details.ConflictingStudyInfo.StudyDate = value;
if (desc.TryGetValue(DicomTags.StudyInstanceUid, out value))
details.ConflictingStudyInfo.StudyInstanceUid = value;
details.ConflictingStudyInfo.Patient = new ReconcileDetails.PatientInfo();
if (desc.TryGetValue(DicomTags.PatientsBirthDate, out value))
details.ConflictingStudyInfo.Patient.BirthDate = value;
if (desc.TryGetValue(DicomTags.IssuerOfPatientId, out value))
details.ConflictingStudyInfo.Patient.IssuerOfPatientID = value;
if (desc.TryGetValue(DicomTags.PatientsName, out value))
details.ConflictingStudyInfo.Patient.Name = value;
if (desc.TryGetValue(DicomTags.PatientId, out value))
details.ConflictingStudyInfo.Patient.PatientID = value;
if (desc.TryGetValue(DicomTags.PatientsSex, out value))
details.ConflictingStudyInfo.Patient.Sex = value;
var series = new List<ReconcileDetails.SeriesDetails>();
details.ConflictingStudyInfo.Series = series;
var uidBroker =
HttpContextData.Current.ReadContext.GetBroker<IStudyIntegrityQueueUidEntityBroker>();
var criteria = new StudyIntegrityQueueUidSelectCriteria();
criteria.StudyIntegrityQueueKey.EqualTo(item.TheStudyIntegrityQueueItem.GetKey());
IList<StudyIntegrityQueueUid> uids = uidBroker.Find(criteria);
Dictionary<string, List<StudyIntegrityQueueUid>> seriesGroups = CollectionUtils.GroupBy(uids,
uid =>
uid.
SeriesInstanceUid);
foreach (string seriesUid in seriesGroups.Keys)
{
var seriesDetails = new ReconcileDetails.SeriesDetails
{
SeriesInstanceUid = seriesUid,
Description = seriesGroups[seriesUid][0].SeriesDescription,
NumberOfInstances = seriesGroups[seriesUid].Count
};
//seriesDetails.Modality = "N/A";
series.Add(seriesDetails);
}
}
return details;
}
/// <summary>
/// Checks for the existinance of a SOP for a given Study in the <see cref="StudyIntegrityQueue"/>.
/// </summary>
/// <param name="studyStorageKey">The StudyStorage primary key</param>
/// <param name="sopInstanceUid">The Sop Instance ot look for</param>
/// <param name="seriesInstanceUid">The Series Instance Uid of the Sop</param>
/// <returns>true if an entry exists, false if it doesn't</returns>
static public bool StudyIntegrityUidExists(ServerEntityKey studyStorageKey, string seriesInstanceUid, string sopInstanceUid)
{
Platform.CheckForNullReference(studyStorageKey, "studyStorageKey");
using (ServerExecutionContext scope = new ServerExecutionContext())
{
IStudyIntegrityQueueEntityBroker broker = scope.PersistenceContext.GetBroker<IStudyIntegrityQueueEntityBroker>();
StudyIntegrityQueueUidSelectCriteria uidSelectCriteria = new StudyIntegrityQueueUidSelectCriteria();
uidSelectCriteria.SeriesInstanceUid.EqualTo(seriesInstanceUid);
uidSelectCriteria.SopInstanceUid.EqualTo(sopInstanceUid);
StudyIntegrityQueueSelectCriteria selectCriteria = new StudyIntegrityQueueSelectCriteria();
selectCriteria.StudyStorageKey.EqualTo(studyStorageKey);
selectCriteria.StudyIntegrityQueueUidRelatedEntityCondition.Exists(uidSelectCriteria);
return broker.Count(selectCriteria) > 0;
}
}
private static void ReconcileStudy(string command,StudyIntegrityQueue item )
{
//Ignore the reconcile command if the item is null.
if (item == null) return;
// Preload the change description so its not done during the DB transaction
XmlDocument changeDescription = new XmlDocument();
changeDescription.LoadXml(command);
// The Xml in the SIQ item was generated when the images were received and put into the SIQ.
// We now add the user info to it so that it will be logged in the history
ReconcileStudyWorkQueueData queueData = XmlUtils.Deserialize<ReconcileStudyWorkQueueData>(item.Details);
queueData.TimeStamp = Platform.Time;
queueData.UserId = ServerHelper.CurrentUserName;
using (IUpdateContext context = PersistentStoreRegistry.GetDefaultStore().OpenUpdateContext(UpdateContextSyncMode.Flush))
{
LockStudyParameters lockParms = new LockStudyParameters
{
QueueStudyStateEnum = QueueStudyStateEnum.ReconcileScheduled,
StudyStorageKey = item.StudyStorageKey
};
ILockStudy broker = context.GetBroker<ILockStudy>();
broker.Execute(lockParms);
if (!lockParms.Successful)
{
throw new ApplicationException(lockParms.FailureReason);
}
//Add to Study History
StudyHistoryeAdaptor historyAdaptor = new StudyHistoryeAdaptor();
StudyHistoryUpdateColumns parameters = new StudyHistoryUpdateColumns
{
StudyData = item.StudyData,
ChangeDescription = changeDescription,
StudyStorageKey = item.StudyStorageKey,
StudyHistoryTypeEnum = StudyHistoryTypeEnum.StudyReconciled
};
StudyHistory history = historyAdaptor.Add(context, parameters);
//Create WorkQueue Entry
WorkQueueAdaptor workQueueAdaptor = new WorkQueueAdaptor();
WorkQueueUpdateColumns row = new WorkQueueUpdateColumns
{
Data = XmlUtils.SerializeAsXmlDoc(queueData),
ServerPartitionKey = item.ServerPartitionKey,
StudyStorageKey = item.StudyStorageKey,
StudyHistoryKey = history.GetKey(),
WorkQueueTypeEnum = WorkQueueTypeEnum.ReconcileStudy,
WorkQueueStatusEnum = WorkQueueStatusEnum.Pending,
ScheduledTime = Platform.Time,
ExpirationTime = Platform.Time.AddHours(1),
GroupID = item.GroupID
};
WorkQueue newWorkQueueItem = workQueueAdaptor.Add(context, row);
StudyIntegrityQueueUidAdaptor studyIntegrityQueueUidAdaptor = new StudyIntegrityQueueUidAdaptor();
StudyIntegrityQueueUidSelectCriteria crit = new StudyIntegrityQueueUidSelectCriteria();
crit.StudyIntegrityQueueKey.EqualTo(item.GetKey());
IList<StudyIntegrityQueueUid> uidList = studyIntegrityQueueUidAdaptor.Get(context, crit);
WorkQueueUidAdaptor workQueueUidAdaptor = new WorkQueueUidAdaptor();
WorkQueueUidUpdateColumns update = new WorkQueueUidUpdateColumns();
foreach (StudyIntegrityQueueUid uid in uidList)
{
update.WorkQueueKey = newWorkQueueItem.GetKey();
update.SeriesInstanceUid = uid.SeriesInstanceUid;
update.SopInstanceUid = uid.SopInstanceUid;
update.RelativePath = uid.RelativePath;
workQueueUidAdaptor.Add(context, update);
}
//DeleteStudyIntegrityQueue Item
StudyIntegrityQueueUidSelectCriteria criteria = new StudyIntegrityQueueUidSelectCriteria();
criteria.StudyIntegrityQueueKey.EqualTo(item.GetKey());
studyIntegrityQueueUidAdaptor.Delete(context, criteria);
StudyIntegrityQueueAdaptor studyIntegrityQueueAdaptor = new StudyIntegrityQueueAdaptor();
studyIntegrityQueueAdaptor.Delete(context, item.GetKey());
context.Commit();
}
}
public StudyIntegrityQueueUidSelectCriteria(StudyIntegrityQueueUidSelectCriteria other)
: base(other)
{
}