public PredictionReader(Stream stream, IDictionary <ushort, IChromosome> refIndexToChromosome,
IntermediateIoCommon.FileType expectedFileType)
{
_refIndexToChromosome = refIndexToChromosome;
_reader = FileUtilities.GetStreamReader(stream);
IntermediateIoCommon.ReadHeader(_reader, expectedFileType);
}
internal RegulatoryRegionReader(Stream stream, IDictionary <ushort, IChromosome> refIndexToChromosome)
{
_refIndexToChromosome = refIndexToChromosome;
_reader = FileUtilities.GetStreamReader(stream);
IntermediateIoCommon.ReadHeader(_reader, IntermediateIoCommon.FileType.Regulatory);
}
internal MutableTranscriptReader(Stream stream, IDictionary <ushort, IChromosome> refIndexToChromosome)
{
_refIndexToChromosome = refIndexToChromosome;
_reader = FileUtilities.GetStreamReader(stream);
Header = IntermediateIoCommon.ReadHeader(_reader, IntermediateIoCommon.FileType.Transcript);
}
internal GenbankReader(Stream stream)
{
_reader = FileUtilities.GetStreamReader(stream);
IntermediateIoCommon.ReadHeader(_reader, IntermediateIoCommon.FileType.Genbank);
}
internal GenbankReader(Stream stream)
{
_reader = new StreamReader(stream);
IntermediateIoCommon.ReadHeader(_reader, IntermediateIoCommon.FileType.Genbank);
}