public override IEnumerable <string> Process(string fileName)
{
var curResult = ChipSeqItemUtils.ReadItems(sourceFiles);
var curComp = new Dictionary <string, List <OverlappedChipSeqComparisonItem> >();
foreach (var res in curResult)
{
curComp[res.Key] = (from r in res.Value
select OverlappedChipSeqComparisonItem.Build(r, filenameGroup)).ToList();
}
foreach (var g in curComp.Values)
{
foreach (var r in g)
{
foreach (var item in r.ItemMap.Values)
{
item.CalculateFields();
item.InitializeDetails(filenameMap);
}
}
}
var olist = (from g in curComp.Values
from r in g
select r).ToList();
new OverlappedChipSeqComparisonItemFormat().WriteToFile(fileName, olist);
return(new string[] { fileName });
}
public override IEnumerable <string> Process(string fileName)
{
var curResult = ChipSeqItemUtils.ReadItems(sourceFiles);
foreach (var g in curResult.Values)
{
g.ForEach(m =>
{
m.CalculateFields();
m.InitializeDetails(filenameMap);
});
g.Sort((m1, m2) => m2.Ratio.CompareTo(m1.Ratio));
}
var ocsList = (from g in curResult.Values
orderby g.Max(m => m.Ratio) descending
from o in g
select o).ToList();
new OverlappedChipSeqItemFormat().WriteToFile(fileName, ocsList);
return(new string[] { fileName });
}