private GlycanTreeForDrawer ConnectTree(List <GlycanTreeForDrawer> argList)
{
GlycanTreeForDrawer Tree = argList[0];
if (argList.Count == 1)
{
return(argList[0]);
}
else
{
for (int i = 1; i < argList.Count; i++)
{
if (Tree.GetChild.Count == 0)
{
Tree.AddChild(argList[i]);
}
else
{
GlycanTreeForDrawer GI = Tree.GetChild[0];
while (GI.GetChild.Count != 0)
{
GI = GI.GetChild[0];
}
GI.AddChild(argList[i]);
}
}
return(Tree);
}
}
private void ConstructTree()
{
string[] glycans = _iupac.Replace(" ", "").Replace("??", "-").Split('-');
Stack TreeStake = new Stack();
for (int i = 0; i < glycans.Length; i++)
{
if (glycans[i].Contains(")("))
{
TreeStake.Push(")");
TreeStake.Push("(");
TreeStake.Push(new GlycanTreeForDrawer(String2GlycanType(glycans[i])));
}
else if (glycans[i].Contains("("))
{
List <GlycanTreeForDrawer> GI = new List <GlycanTreeForDrawer>();
while (TreeStake.Count != 0 && TreeStake.Peek().ToString() != ")" && TreeStake.Peek().ToString() != "(")
{
GI.Add((GlycanTreeForDrawer)TreeStake.Pop());
}
TreeStake.Push(ConnectTree(GI));
TreeStake.Push("(");
TreeStake.Push(new GlycanTreeForDrawer(String2GlycanType(glycans[i])));
}
else if (glycans[i].Contains(")"))
{
List <GlycanTreeForDrawer> GILst = new List <GlycanTreeForDrawer>();
while (TreeStake.Count != 0 && TreeStake.Peek().ToString() != ")" && TreeStake.Peek().ToString() != "(")
{
GILst.Add((GlycanTreeForDrawer)TreeStake.Pop());
}
TreeStake.Push(ConnectTree(GILst));
TreeStake.Push(new GlycanTreeForDrawer(String2GlycanType(glycans[i])));
GlycanTreeForDrawer GI = (GlycanTreeForDrawer)TreeStake.Pop();
GlycanTreeForDrawer child = (GlycanTreeForDrawer)TreeStake.Pop();
child.Parent = GI;
GI.AddChild(child);
TreeStake.Pop(); //(
if (TreeStake.Peek().ToString() == ")") //One More Link
{
TreeStake.Pop(); //)
child = (GlycanTreeForDrawer)TreeStake.Pop();
child.Parent = GI;
GI.AddChild(child);
TreeStake.Pop(); //(
if (TreeStake.Peek().ToString() == ")") //One More Link
{
TreeStake.Pop(); //)
child = (GlycanTreeForDrawer)TreeStake.Pop();
child.Parent = GI;
GI.AddChild(child);
TreeStake.Pop();//(
}
child = (GlycanTreeForDrawer)TreeStake.Pop();
child.Parent = GI;
GI.AddChild(child);
}
else
{
child = (GlycanTreeForDrawer)TreeStake.Pop();
child.Parent = GI;
GI.AddChild(child);
}
TreeStake.Push(GI);
}
else
{
if (TreeStake.Count != 0 && TreeStake.Peek().ToString() != ")" && TreeStake.Peek().ToString() != "(")
{
GlycanTreeForDrawer GI = new GlycanTreeForDrawer(String2GlycanType(glycans[i]));
GlycanTreeForDrawer child = (GlycanTreeForDrawer)TreeStake.Pop();
child.Parent = GI;
GI.AddChild(child);
TreeStake.Push(GI);
}
else
{
TreeStake.Push(new GlycanTreeForDrawer(String2GlycanType(glycans[i])));
}
}
}
GTree = (GlycanTreeForDrawer)TreeStake.Pop();
if (TreeStake.Count != 0)
{
throw new Exception("Steak is not zero,Parsing Error");
}
GTree.UpdateDistance(-1);
if (!_isBW)
{
AssignColor();
}
}
private void ConstructTree()
{
string[] glycans = _iupac.Replace(" ", "").Replace("??", "-").Split('-');
Stack TreeStake = new Stack();
for (int i = 0; i < glycans.Length; i++)
{
if (glycans[i].Contains(")("))
{
TreeStake.Push(")");
TreeStake.Push("(");
TreeStake.Push(new GlycanTreeForDrawer(String2GlycanType(glycans[i])));
}
else if (glycans[i].Contains("("))
{
List<GlycanTreeForDrawer> GI = new List<GlycanTreeForDrawer>();
while (TreeStake.Count != 0 && TreeStake.Peek().ToString() != ")" && TreeStake.Peek().ToString() != "(")
{
GI.Add((GlycanTreeForDrawer)TreeStake.Pop());
}
TreeStake.Push(ConnectTree(GI));
TreeStake.Push("(");
TreeStake.Push(new GlycanTreeForDrawer(String2GlycanType(glycans[i])));
}
else if (glycans[i].Contains(")"))
{
List<GlycanTreeForDrawer> GILst = new List<GlycanTreeForDrawer>();
while (TreeStake.Count != 0 && TreeStake.Peek().ToString() != ")" && TreeStake.Peek().ToString() != "(")
{
GILst.Add((GlycanTreeForDrawer)TreeStake.Pop());
}
TreeStake.Push(ConnectTree(GILst));
TreeStake.Push(new GlycanTreeForDrawer(String2GlycanType(glycans[i])));
GlycanTreeForDrawer GI = (GlycanTreeForDrawer)TreeStake.Pop();
GlycanTreeForDrawer child = (GlycanTreeForDrawer)TreeStake.Pop();
child.Parent = GI;
GI.AddChild(child);
TreeStake.Pop(); //(
if (TreeStake.Peek().ToString() == ")") //One More Link
{
TreeStake.Pop();//)
child = (GlycanTreeForDrawer)TreeStake.Pop();
child.Parent = GI;
GI.AddChild(child);
TreeStake.Pop();//(
if (TreeStake.Peek().ToString() == ")") //One More Link
{
TreeStake.Pop();//)
child = (GlycanTreeForDrawer)TreeStake.Pop();
child.Parent = GI;
GI.AddChild(child);
TreeStake.Pop();//(
}
child = (GlycanTreeForDrawer)TreeStake.Pop();
child.Parent = GI;
GI.AddChild(child);
}
else
{
child = (GlycanTreeForDrawer)TreeStake.Pop();
child.Parent = GI;
GI.AddChild(child);
}
TreeStake.Push(GI);
}
else
{
if (TreeStake.Count != 0 && TreeStake.Peek().ToString() != ")" && TreeStake.Peek().ToString() != "(")
{
GlycanTreeForDrawer GI = new GlycanTreeForDrawer(String2GlycanType(glycans[i]));
GlycanTreeForDrawer child = (GlycanTreeForDrawer)TreeStake.Pop();
child.Parent = GI;
GI.AddChild(child);
TreeStake.Push(GI);
}
else
{
TreeStake.Push(new GlycanTreeForDrawer(String2GlycanType(glycans[i])));
}
}
}
GTree = (GlycanTreeForDrawer)TreeStake.Pop();
if (TreeStake.Count != 0)
{
throw new Exception("Steak is not zero,Parsing Error");
}
GTree.UpdateDistance(-1);
if(!_isBW)
{
AssignColor();
}
}
