/// <summary>
/// Private constructor for clone method.
/// </summary>
/// <param name="other">Other RibosomeBindingSite instance.</param>
private RibosomeBindingSite(RibosomeBindingSite other)
: base(other) { }
/// <summary>
/// Private constructor for clone method.
/// </summary>
/// <param name="other">Other RibosomeBindingSite instance.</param>
private RibosomeBindingSite(RibosomeBindingSite other)
: base(other)
{
}
/// <summary>
/// Validate GenBank RibosomeBindingSite features
/// </summary>
/// <param name="nodeName">XML node name</param>
/// <param name="genMetadata">GenBank Metadata</param>
private void ValidateGenBankRibosomeBindingSite(string nodeName,
GenBankMetadata genMetadata)
{
// Get Values from XML node.
string expectedLocation = utilityObj.xmlUtil.GetTextValue(
nodeName, Constants.Location);
string expectedAllele = utilityObj.xmlUtil.GetTextValue(
nodeName, Constants.AlleleNode);
string featureCount = utilityObj.xmlUtil.GetTextValue(
nodeName, Constants.QualifierCount);
string expectedDbReference = utilityObj.xmlUtil.GetTextValue(
nodeName, Constants.DbReferenceNode);
string geneSymbol = utilityObj.xmlUtil.GetTextValue(
nodeName, Constants.GeneSymbol);
string expectedCitation = utilityObj.xmlUtil.GetTextValue(
nodeName, Constants.CitationNode);
string expectedExperiment = utilityObj.xmlUtil.GetTextValue(
nodeName, Constants.ExperimentNode);
string expectedInference = utilityObj.xmlUtil.GetTextValue(
nodeName, Constants.InferenceNode);
string expectedLabel = utilityObj.xmlUtil.GetTextValue(
nodeName, Constants.LabelNode);
string expectedNote = utilityObj.xmlUtil.GetTextValue(
nodeName, Constants.Note);
string expectedMap = utilityObj.xmlUtil.GetTextValue(
nodeName, Constants.GenbankMapNode);
List<RibosomeBindingSite> ribosomeSite =
genMetadata.Features.RibosomeBindingSites;
// Create a copy of RibosomeBindigSite Region feature.
RibosomeBindingSite cloneRibosomeSite =
ribosomeSite[0].Clone();
var locBuilder = new LocationBuilder();
// Validate RibosomeBindigSite qualifiers.
Assert.AreEqual(ribosomeSite.Count.ToString((IFormatProvider) null)
, featureCount);
Assert.AreEqual(cloneRibosomeSite.DatabaseCrossReference[0],
expectedDbReference);
Assert.AreEqual(cloneRibosomeSite.GeneSymbol,
geneSymbol);
Assert.AreEqual(ribosomeSite[0].Allele,
expectedAllele);
Assert.AreEqual(ribosomeSite[0].Citation[0],
expectedCitation);
Assert.AreEqual(ribosomeSite[0].Experiment[0],
expectedExperiment);
Assert.AreEqual(ribosomeSite[0].Inference[0],
expectedInference);
Assert.AreEqual(ribosomeSite[0].Label,
expectedLabel);
Assert.AreEqual(locBuilder.GetLocationString(
genMetadata.Features.RibosomeBindingSites[0].Location),
expectedLocation);
Assert.AreEqual(ribosomeSite[0].Note[0],
expectedNote);
Assert.AreEqual(ribosomeSite[0].GenomicMapPosition,
expectedMap);
Assert.IsNotNull(ribosomeSite[0].OldLocusTag[0]);
Assert.IsNotNull(ribosomeSite[0].LocusTag[0]);
Assert.IsNotNull(ribosomeSite[0].StandardName);
// Create a new RibosomeBindingSite feature using constructor.
var ribosomeBindingSite =
new RibosomeBindingSite(expectedLocation);
var ribosomeBindingSiteLoc =
new RibosomeBindingSite(
genMetadata.Features.RibosomeBindingSites[0].Location);
// Set and validate qualifiers.
ribosomeBindingSite.Allele = expectedAllele;
ribosomeBindingSiteLoc.GeneSymbol = geneSymbol;
ribosomeBindingSiteLoc.GenomicMapPosition = expectedMap;
Assert.AreEqual(ribosomeBindingSiteLoc.GenomicMapPosition,
expectedMap);
Assert.AreEqual(ribosomeBindingSite.Allele, expectedAllele);
Assert.AreEqual(ribosomeBindingSiteLoc.GeneSymbol,
geneSymbol);
}
