/// <summary>
/// For each sequence read by the parser, pass it to the metric handler. Also update GUI summary panels
/// </summary>
private void ProcessSequences(string filename, BAMParser parser)
{
double incrementOne = 1; // the progress bar will update every [incrementOne] many clusters
double incrementTwo = 1; // the progress bar will update every [incrementTwo] many clusters
int increaseIncrementAfter = 100; // after this many clusters, increase the increment at which we update the gui
double increment; // the current increment at which progress bar will update
int updateDisplayForClusterIndex = -1, clusterCount = -1; // whether we have already updated the gui for this cluster
foreach (SAMAlignedSequence se in parser.ParseSequence(filename))
{
if (metricHandler.Add(se))
{
clusterCount = metricHandler.ClusterCount;
increment = (clusterCount < increaseIncrementAfter) ? incrementOne : incrementTwo;
if ((clusterCount == 1 || (double)clusterCount % increment == 0) && clusterCount != updateDisplayForClusterIndex)
{
updateDisplayForClusterIndex = clusterCount;
Dispatcher.BeginInvoke(
System.Windows.Threading.DispatcherPriority.Normal,
new StatsDelegate(UpdateStatsPanel), metricHandler.GoodCount, clusterCount,
metricHandler.MaxSampleCount, metricHandler.MaxAlignmentQuality, metricHandler.MaxReadQuality,
metricHandler.AverageDirt, metricHandler.AverageMapQ, metricHandler.AverageReadQ,
metricHandler.AverageDirtGood, metricHandler.AverageMapQGood, metricHandler.AverageReadQGood);
}
}
else
{
Console.WriteLine(Properties.Resources.HANDLER_FINISHED);
break;
}
}
// Tell the handler that there are no more sequences to receive
metricHandler.SetComplete();
}
