public void run()
{
try
{
initPaths();
string[] files = System.IO.Directory.GetFiles(sourcePath, "*_*_*_cmpltd.bdf");
Dictionary<string, List<string>> patients = new Dictionary<string, List<string>>();
foreach (string file in files)
{
string fileName = file.Substring(file.LastIndexOf("\\") + 1);
string tmp = fileName.Substring(0, fileName.LastIndexOf("_cmpltd.bdf"));
string patientName = tmp.Substring(tmp.LastIndexOf('_') + 1);
if (!patients.ContainsKey(patientName))
{
patients.Add(patientName, new List<string>());
}
patients[patientName].Add(file);
}
foreach (var entry in patients)
{
System.Console.WriteLine("{0}:", entry.Key);
foreach (var file in entry.Value)
{
System.Console.WriteLine("\t{0}", file);
}
}
foreach (string patient in patients.Keys)
{
if (patient.Equals("Gromov"))
continue;
List<KeyValuePair<BDFHeader, string>> headers = new List<KeyValuePair<BDFHeader, string>>();
foreach (string fileName in patients[patient])
{
BDFReader reader = new BDFReader(fileName);
headers.Add(new KeyValuePair<BDFHeader, string>(reader.readHeader(), fileName));
}
headers.RemoveAll((x) => x.Key == null);
headers.Sort((x, y) => x.Key.StartDateTime.CompareTo(y.Key.StartDateTime));
if (!System.IO.Directory.Exists(targetPath + patient))
System.IO.Directory.CreateDirectory(targetPath + patient);
DateTime cur = headers.First().Key.StartDateTime;
DateTime pos = cur;
BDFFilesPatcher patcher = null;
{
string name = targetPath + patient + '\\' + generateFileName(pos, patient);
Console.WriteLine(String.Format("Writing to file {0}", name));
patcher = new BDFFilesPatcher(name, cur);
}
foreach (KeyValuePair<BDFHeader, string> header in headers)
{
BDFReader reader = new BDFReader(header.Value);
Console.WriteLine(String.Format("Reading file: {0}", header.Value));
if (!reader.readFile())
{
Console.WriteLine();
Console.WriteLine(String.Format("FAILED TO READ FILE: {0}", header.Value));
Console.WriteLine();
continue;
}
if (reader.File.Header.StartDateTime.CompareTo(pos) < 0)
{
Console.WriteLine();
Console.WriteLine(String.Format("File {0} begins at time {1}, while data already recorded to {2}", header.Value, reader.File.Header.StartDateTime, pos));
Console.WriteLine();
continue;
}
while (header.Key.StartDateTime.CompareTo(cur.AddDays(1.0)) >= 0)
{
cur = cur.AddDays(1.0);
patcher.patchEmpty(reader.File, (int)(cur - pos).TotalSeconds);
pos = cur;
patcher.close();
string name = targetPath + patient + '\\' + generateFileName(pos, patient);
Console.WriteLine(String.Format("Writing to file {0}", name));
patcher = new BDFFilesPatcher(name, cur);
}
patcher.patchEmpty(reader.File, (int)(header.Key.StartDateTime - pos).TotalSeconds);
pos = header.Key.StartDateTime;
DateTime end = header.Key.StartDateTime.AddSeconds(header.Key.RecordCount);
while (end.CompareTo(cur.AddDays(1.0)) > 0)
{
patcher.patch(reader.File, (int)(pos - header.Key.StartDateTime).TotalSeconds, (int)(cur.AddDays(1.0) - pos).TotalSeconds);
cur = cur.AddDays(1.0);
pos = cur;
patcher.close();
string name = targetPath + patient + '\\' + generateFileName(pos, patient);
Console.WriteLine(String.Format("Writing to file {0}", name));
patcher = new BDFFilesPatcher(name, cur);
}
patcher.patch(reader.File, (int)(pos - header.Key.StartDateTime).TotalSeconds, (int)(end - pos).TotalSeconds);
pos = end;
reader = null;
}
patcher.close();
}
System.Console.WriteLine("Success!");
}
catch (Exception e)
{
System.Console.WriteLine(e.ToString());
}
}
public void run()
{
try
{
initPaths();
string[] files = System.IO.Directory.GetFiles(sourcePath, "*_*_*_cmpltd.bdf");
Dictionary <string, List <string> > patients = new Dictionary <string, List <string> >();
foreach (string file in files)
{
string fileName = file.Substring(file.LastIndexOf("\\") + 1);
string tmp = fileName.Substring(0, fileName.LastIndexOf("_cmpltd.bdf"));
string patientName = tmp.Substring(tmp.LastIndexOf('_') + 1);
if (!patients.ContainsKey(patientName))
{
patients.Add(patientName, new List <string>());
}
patients[patientName].Add(file);
}
foreach (var entry in patients)
{
System.Console.WriteLine("{0}:", entry.Key);
foreach (var file in entry.Value)
{
System.Console.WriteLine("\t{0}", file);
}
}
foreach (string patient in patients.Keys)
{
if (patient.Equals("Gromov"))
{
continue;
}
List <KeyValuePair <BDFHeader, string> > headers = new List <KeyValuePair <BDFHeader, string> >();
foreach (string fileName in patients[patient])
{
BDFReader reader = new BDFReader(fileName);
headers.Add(new KeyValuePair <BDFHeader, string>(reader.readHeader(), fileName));
}
headers.RemoveAll((x) => x.Key == null);
headers.Sort((x, y) => x.Key.StartDateTime.CompareTo(y.Key.StartDateTime));
if (!System.IO.Directory.Exists(targetPath + patient))
{
System.IO.Directory.CreateDirectory(targetPath + patient);
}
DateTime cur = headers.First().Key.StartDateTime;
DateTime pos = cur;
BDFFilesPatcher patcher = null;
{
string name = targetPath + patient + '\\' + generateFileName(pos, patient);
Console.WriteLine(String.Format("Writing to file {0}", name));
patcher = new BDFFilesPatcher(name, cur);
}
foreach (KeyValuePair <BDFHeader, string> header in headers)
{
BDFReader reader = new BDFReader(header.Value);
Console.WriteLine(String.Format("Reading file: {0}", header.Value));
if (!reader.readFile())
{
Console.WriteLine();
Console.WriteLine(String.Format("FAILED TO READ FILE: {0}", header.Value));
Console.WriteLine();
continue;
}
if (reader.File.Header.StartDateTime.CompareTo(pos) < 0)
{
Console.WriteLine();
Console.WriteLine(String.Format("File {0} begins at time {1}, while data already recorded to {2}", header.Value, reader.File.Header.StartDateTime, pos));
Console.WriteLine();
continue;
}
while (header.Key.StartDateTime.CompareTo(cur.AddDays(1.0)) >= 0)
{
cur = cur.AddDays(1.0);
patcher.patchEmpty(reader.File, (int)(cur - pos).TotalSeconds);
pos = cur;
patcher.close();
string name = targetPath + patient + '\\' + generateFileName(pos, patient);
Console.WriteLine(String.Format("Writing to file {0}", name));
patcher = new BDFFilesPatcher(name, cur);
}
patcher.patchEmpty(reader.File, (int)(header.Key.StartDateTime - pos).TotalSeconds);
pos = header.Key.StartDateTime;
DateTime end = header.Key.StartDateTime.AddSeconds(header.Key.RecordCount);
while (end.CompareTo(cur.AddDays(1.0)) > 0)
{
patcher.patch(reader.File, (int)(pos - header.Key.StartDateTime).TotalSeconds, (int)(cur.AddDays(1.0) - pos).TotalSeconds);
cur = cur.AddDays(1.0);
pos = cur;
patcher.close();
string name = targetPath + patient + '\\' + generateFileName(pos, patient);
Console.WriteLine(String.Format("Writing to file {0}", name));
patcher = new BDFFilesPatcher(name, cur);
}
patcher.patch(reader.File, (int)(pos - header.Key.StartDateTime).TotalSeconds, (int)(end - pos).TotalSeconds);
pos = end;
reader = null;
}
patcher.close();
}
System.Console.WriteLine("Success!");
}
catch (Exception e)
{
System.Console.WriteLine(e.ToString());
}
}