private long BWMatching(BWt first, BWt second, List <char> list)
{
long top = 0;
long bottom = second.processedArray.Count() - 1;
while (top <= bottom)
{
if (list.Count != 0)
{
char symbol = list[list.Count - 1];
int symNum = SymbolNumber(symbol);
list.RemoveAt(list.Count - 1);
Tuple <int, long, int> firstOcc = FindLett(top, bottom, second, symNum);
if (firstOcc.Item1 == -5)
{
return(0);
}
top = first.startINdex[firstOcc.Item1] + firstOcc.Item2 - 1;
long countAfterBott = AfterBott(bottom, second, symNum);
bottom = first.startINdex[firstOcc.Item1] + first.count[firstOcc.Item1] - countAfterBott - 1;
}
else
{
return(bottom - top + 1);
}
}
return(-4);
}
public string Solve(string bwt)
{
string sortedbwt = Sort(bwt);
BWt first = new BWt(sortedbwt);
BWt second = new BWt(bwt);
StringBuilder strResult = new StringBuilder(bwt);
string result;
int len = bwt.Length - 1;
strResult[(int)len] = '$';
len--;
Tuple <int, long, int> curr = second.processedArray[0];
while (len >= 0)
{
curr = find(second.processedArray[curr.Item3], first, second);
if (len < bwt.Length && len > -1)
{
strResult[(int)len] = returnLet(curr.Item1);
}
len--;
}
result = strResult.ToString();
return(result);
}
private long AfterBott(long bottom, BWt second, int symNum)
{
for (int i = (int)bottom + 1; i < second.text.Length; i++)
{
if (second.processedArray[i].Item1 == symNum)
{
return(second.count[symNum] - second.processedArray[i].Item2 + 1);
}
}
return(0);
}
private Tuple <int, long, int> FindLett(long top, long bottom, BWt second, int symNum)
{
for (int i = (int)top; i <= (int)bottom; i++)
{
if (second.processedArray[i].Item1 == symNum)
{
return(second.processedArray[i]);
}
}
return(new Tuple <int, long, int>(-5, -5, -5));
}
public long[] Solve(string text, long n, String[] patterns)
{
string sortedbwt = Sort(text);
BWt first = new BWt(sortedbwt);
BWt second = new BWt(text);
List <long> result = new List <long>();
for (int i = 0; i < patterns.Length; i++)
{
result.Add(BWMatching(first, second, patterns[i].ToList()));
}
return(result.ToArray());
}
private Tuple <int, long, int> find(Tuple <int, long, int> curr, BWt first, BWt second)
{
long count = curr.Item2 - 1;
long indexF = curr.Item1;
if (indexF > -1 && indexF < first.startINdex.Length)
{
indexF = first.startINdex[indexF] + count;
}
if (indexF > -1 && indexF < first.processedArray.Count)
{
return(first.processedArray[(int)indexF]);
}
return(new Tuple <int, long, int>(-3, -3, -4));
}
