public filter_options(tile_naming_method naming_method, uint lane, short channel, dna_bases arg3, uint surface) : this(c_csharp_plotPINVOKE.new_filter_options__SWIG_5((int)naming_method, lane, channel, (int)arg3, surface), true)
{
}
public tile_naming_method naming_method()
{
tile_naming_method ret = (tile_naming_method)c_csharp_plotPINVOKE.filter_options_naming_method(swigCPtr);
return(ret);
}
public filter_options(tile_naming_method naming_method, uint lane, short channel, dna_bases arg3, uint surface, uint read, uint cycle, uint tile_number) : this(c_csharp_plotPINVOKE.new_filter_options__SWIG_2((int)naming_method, lane, channel, (int)arg3, surface, read, cycle, tile_number), true)
{
}
public flowcell_layout(uint lane_count, uint surface_count, uint swath_count, uint tile_count, uint sections_per_lane, uint lanes_per_section, string_vector tiles, tile_naming_method naming_method) : this(c_csharp_runPINVOKE.new_flowcell_layout__SWIG_1(lane_count, surface_count, swath_count, tile_count, sections_per_lane, lanes_per_section, string_vector.getCPtr(tiles), (int)naming_method), true)
{
if (c_csharp_runPINVOKE.SWIGPendingException.Pending)
{
throw c_csharp_runPINVOKE.SWIGPendingException.Retrieve();
}
}
public void tile_naming_method(tile_naming_method naming_method)
{
c_csharp_plotPINVOKE.filter_options_tile_naming_method(swigCPtr, (int)naming_method);
}
public static string to_string(tile_naming_method value)
{
string ret = c_csharp_runPINVOKE.to_string__SWIG_3((int)value);
return(ret);
}
public void set_naming_method(tile_naming_method naming_method)
{
c_csharp_runPINVOKE.flowcell_layout_set_naming_method(swigCPtr, (int)naming_method);
}
public uint physical_location_column(tile_naming_method method, uint swath_count, bool all_surfaces)
{
uint ret = c_csharp_metricsPINVOKE.base_metric_physical_location_column(swigCPtr, (int)method, swath_count, all_surfaces);
return(ret);
}
public uint physical_location_row(tile_naming_method method, uint section_per_lane, uint tile_count)
{
uint ret = c_csharp_metricsPINVOKE.base_metric_physical_location_row(swigCPtr, (int)method, section_per_lane, tile_count);
return(ret);
}
public uint swath(tile_naming_method method)
{
uint ret = c_csharp_metricsPINVOKE.base_metric_swath(swigCPtr, (int)method);
return(ret);
}
public uint physical_location_index(tile_naming_method method, uint section_per_lane, uint tile_count, uint swath_count, bool all_surfaces)
{
uint ret = c_csharp_metricsPINVOKE.base_metric_physical_location_index(swigCPtr, (int)method, section_per_lane, tile_count, swath_count, all_surfaces);
return(ret);
}
public uint number(tile_naming_method arg0)
{
uint ret = c_csharp_metricsPINVOKE.base_metric_number(swigCPtr, (int)arg0);
return(ret);
}
protected override void SetUp()
{
string xml_file = "<?xml version=\"1.0\"?>\n" +
"<RunInfo xmlns:xsd=\"http://www.w3.org/2001/XMLSchema\" xmlns:xsi=\"http://www.w3.org/2001/XMLSchema-instance\" Version=\"2\">\n" +
" <Run Id=\"120705_M00903_0009_A000000000-A12V4\" Number=\"8\">\n" +
" <Flowcell>000000000-A12V4</Flowcell>\n" +
" <Instrument>M00903</Instrument>\n" +
" <Date>120705</Date>\n" +
" <Reads>\n" +
" <Read NumCycles=\"251\" Number=\"1\" IsIndexedRead=\"N\" />\n" +
" <Read NumCycles=\"12\" Number=\"2\" IsIndexedRead=\"Y\" />\n" +
" <Read NumCycles=\"251\" Number=\"3\" IsIndexedRead=\"N\" />\n" +
" </Reads>\n" +
" <FlowcellLayout LaneCount=\"1\" SurfaceCount=\"2\" SwathCount=\"1\" TileCount=\"14\" />\n" +
" </Run>\n" +
"</RunInfo>";
string_vector Tiles = new string_vector();
string_vector ImageChannels = new string_vector();
read_info[] ReadsArr = new read_info[] {
/*Number, IsIndexedRead, CycleStart, CycleEnd*/
new read_info(1, 1, 251, false),
new read_info(2, 252, 263, true),
new read_info(3, 264, 514, false)
};
read_info_vector Reads = new read_info_vector();
for (int i = 0; i < ReadsArr.Length; i++)
{
Reads.Add(ReadsArr[i]);
}
tile_naming_method TileNamingConvention = tile_naming_method.UnknownTileNamingMethod;
uint LaneCount = 1;
uint SurfaceCount = 2;
uint SwathCount = 1;
uint TileCount = 14;
uint SectionPerLane = 1;
uint LanePerSection = 1;
flowcell_layout FlowcellLayout = new flowcell_layout(
LaneCount,
SurfaceCount,
SwathCount,
TileCount,
SectionPerLane,
LanePerSection,
Tiles,
TileNamingConvention);
string Run_Id = "120705_M00903_0009_A000000000-A12V4";
string Date = "120705";
string InstrumentName = "M00903";
uint RunNumber = 8;
uint version = 2;
image_dimensions ImageDimensions = new image_dimensions(/*Width*/ 0, /*Height*/ 0);
expected_run_info = new info(Run_Id,
Date,
InstrumentName,
RunNumber,
version,
FlowcellLayout,
ImageChannels,
ImageDimensions,
Reads);
run_info.parse(xml_file);
}
public void set_naming_method(tile_naming_method naming_method)
{
c_csharp_run_metricsPINVOKE.run_metrics_set_naming_method(swigCPtr, (int)naming_method);
}
public filter_options(tile_naming_method naming_method, uint lane, short channel) : this(c_csharp_plotPINVOKE.new_filter_options__SWIG_7((int)naming_method, lane, channel), true)
{
}
public tile_naming_method naming_method()
{
tile_naming_method ret = (tile_naming_method)c_csharp_runPINVOKE.flowcell_layout_naming_method(swigCPtr);
return(ret);
}
public filter_options(tile_naming_method naming_method) : this(c_csharp_plotPINVOKE.new_filter_options__SWIG_9((int)naming_method), true)
{
}
public void set_naming_method(tile_naming_method naming_method)
{
c_csharp_runPINVOKE.info_set_naming_method(swigCPtr, (int)naming_method);
}
