public static void Main(string[] args)
{
//mzidFile.Validate( "PMF_example.mzid" );
//mzidFile.Validate( "test.mzid" );
mzidFile mz = new mzidFile();
// Generate a mzIdentML file
mz.AddOntology("PSI-MS", "Proteomics Standards Initiative Mass Spectrometry Vocabularies", "2.25.0",
"http://psidev.cvs.sourceforge.net/viewvc/*checkout*/psidev/psi/psi-ms/mzML/controlledVocabulary/psi-ms.obo");
mz.AddAnalysisSoftware(
"EHU_Tester", "UPV/EHU Tester", "0.1", "http://www.ehu.es", "UPV_EHU",
"MS:none", "software vendor", "PSI-MS",
"MS:none", "PAnalyzer", "PSI-MS", "No customizations");
mz.SetProvider("SGI", "DOC_OWNER", "MS:none", "Kerman", "PSI-MS");
mz.AddPerson("DOC_OWNER", "Kerman", "Aloria", "*****@*****.**", "UPV_EHU");
mz.AddOrganization("UPV_EHU", "University of the Basque Country",
"Barrio Sarriena s/n, 48940 Leioa, Spain", "+34 94 601 200", "*****@*****.**");
mz.AddProtein("DBSeq_UVRB_THET8", "SDB_SwissProt", "UVRB_THET8", "MTFRYRGPSPKGDQPKAIAGLVEALRDGERFVTLLGATGTGKTVTMAKVIEALGRPALVLAPNKILAAQLAAEFRELFPENAVEYFISYYDYYQPEAYVPGKDLYIEKDASINPEIERLRHSTTRSLLTRRDVIVVASVSAIYGLGDPREYRARNLVVERGKPYPREVLLERLLELGYQRNDIDLSPGRFRAKGEVLEIFPAYETEPIRVELFGDEVERISQVHPVTGERLRELPGFVLFPATHYLSPEGLEEILKEIEKELWERVRYFEERGEVLYAQRLKERTLYDLEMLRVMGTCPGVENYARYFTGKAPGEPPYTLLDYFPEDFLVFLDESHVTVPQLQGMYRGDYARKKTLVDYGFRLPSALDNRPLRFEEFLERVSQVVFVSATPGPFELAHSGRVVEQIIRPTGLLDPLVRVKPTENQILDLMEGIRERAARGERTLVTVLTVRMAEELTSFLVEHGIRARYLHHELDAFERQALIRDLRLGHYDCLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNARGEVWLYADRVSEAMQRAIEETNRRRALQEAYNLEHGITPETVRKEVRAVIRPEGYEEAPLEADLSGEDLRERIAELELAMWQAAEALDFERAARLRDEIRALEARLQGVRAPEPVPGGRKRKRR");
mz.AddPeptide("peptide_1_1", "GEVWLYADR");
mz.Save("test.mzid");
// Read a mzIdentML file
/*mz.Load( "mzident_with_grouping.mzid" );
* mz.RetrieveSequences();
*
* // Include sequence information
* mz.Save( "test2.mzid" );*/
}
public static void Main( string[] args )
{
//mzidFile.Validate( "PMF_example.mzid" );
//mzidFile.Validate( "test.mzid" );
mzidFile mz = new mzidFile();
// Generate a mzIdentML file
mz.AddOntology( "PSI-MS", "Proteomics Standards Initiative Mass Spectrometry Vocabularies", "2.25.0",
"http://psidev.cvs.sourceforge.net/viewvc/*checkout*/psidev/psi/psi-ms/mzML/controlledVocabulary/psi-ms.obo" );
mz.AddAnalysisSoftware(
"EHU_Tester", "UPV/EHU Tester", "0.1", "http://www.ehu.es", "UPV_EHU",
"MS:none", "software vendor", "PSI-MS",
"MS:none", "PAnalyzer", "PSI-MS", "No customizations" );
mz.SetProvider( "SGI", "DOC_OWNER", "MS:none", "Kerman", "PSI-MS" );
mz.AddPerson( "DOC_OWNER", "Kerman", "Aloria", "*****@*****.**", "UPV_EHU" );
mz.AddOrganization( "UPV_EHU", "University of the Basque Country",
"Barrio Sarriena s/n, 48940 Leioa, Spain", "+34 94 601 200", "*****@*****.**" );
mz.AddProtein( "DBSeq_UVRB_THET8", "SDB_SwissProt", "UVRB_THET8", "MTFRYRGPSPKGDQPKAIAGLVEALRDGERFVTLLGATGTGKTVTMAKVIEALGRPALVLAPNKILAAQLAAEFRELFPENAVEYFISYYDYYQPEAYVPGKDLYIEKDASINPEIERLRHSTTRSLLTRRDVIVVASVSAIYGLGDPREYRARNLVVERGKPYPREVLLERLLELGYQRNDIDLSPGRFRAKGEVLEIFPAYETEPIRVELFGDEVERISQVHPVTGERLRELPGFVLFPATHYLSPEGLEEILKEIEKELWERVRYFEERGEVLYAQRLKERTLYDLEMLRVMGTCPGVENYARYFTGKAPGEPPYTLLDYFPEDFLVFLDESHVTVPQLQGMYRGDYARKKTLVDYGFRLPSALDNRPLRFEEFLERVSQVVFVSATPGPFELAHSGRVVEQIIRPTGLLDPLVRVKPTENQILDLMEGIRERAARGERTLVTVLTVRMAEELTSFLVEHGIRARYLHHELDAFERQALIRDLRLGHYDCLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNARGEVWLYADRVSEAMQRAIEETNRRRALQEAYNLEHGITPETVRKEVRAVIRPEGYEEAPLEADLSGEDLRERIAELELAMWQAAEALDFERAARLRDEIRALEARLQGVRAPEPVPGGRKRKRR" );
mz.AddPeptide( "peptide_1_1", "GEVWLYADR" );
mz.Save( "test.mzid" );
// Read a mzIdentML file
/*mz.Load( "mzident_with_grouping.mzid" );
mz.RetrieveSequences();
// Include sequence information
mz.Save( "test2.mzid" );*/
}
