예제 #1
0
        public void start(string comment, Hardware.LaserSW.ViewModelBrightSolutions ondaLaser, Button cancelAcq_Button)
        {
            // Define file parameters
            MWArray acqFolder = fileParameters.studyFolder + "\\" + System.DateTime.Now.Year.ToString("0000") + System.DateTime.Now.Month.ToString("00")
                                + System.DateTime.Now.Day.ToString("00") + "\\";
            MWArray acqQuickScanFolder = acqFolder + "QuickScan\\";
            MWArray acqLogFolder       = acqFolder + "Log\\";
            MWArray acqPreviewFolder   = fileParameters.acqPreviewFolder;
            MWArray acqThumbnailFolder = acqFolder + "Thumbnail\\";
            MWArray dataName;

            if (fileParameters.dataName != null)
            {
                dataName = System.DateTime.Now.Hour.ToString("00") + System.DateTime.Now.Minute.ToString("00") + System.DateTime.Now.Second.ToString("00") + "_" + fileParameters.dataName;
            }
            else
            {
                dataName = System.DateTime.Now.Hour.ToString("00") + System.DateTime.Now.Minute.ToString("00") + System.DateTime.Now.Second.ToString("00");
            }


            // create recon folder
            if (!Directory.Exists(acqFolder.ToString()))
            {
                Directory.CreateDirectory(acqFolder.ToString());
            }


            if (!Directory.Exists(acqQuickScanFolder.ToString()))
            {
                Directory.CreateDirectory(acqQuickScanFolder.ToString());
            }
            if (!Directory.Exists(acqLogFolder.ToString()))
            {
                Directory.CreateDirectory(acqLogFolder.ToString());
            }
            if (!Directory.Exists(acqPreviewFolder.ToString()))
            {
                Directory.CreateDirectory(acqPreviewFolder.ToString());
            }
            if (!Directory.Exists(acqThumbnailFolder.ToString()))
            {
                Directory.CreateDirectory(acqThumbnailFolder.ToString());
            }

            // copy file parameters to structure
            string[]      fieldNames = { "acqFolder", "acqQuickScanFolder", "acqLogFolder", "acqPreviewFolder", "acqThumbnailFolder", "dataName" };
            MWStructArray fP         = new MWStructArray(1, 1, fieldNames);

            fP.SetField("acqFolder", acqFolder);
            fP.SetField("acqQuickScanFolder", acqQuickScanFolder);
            fP.SetField("acqLogFolder", acqLogFolder);
            fP.SetField("acqPreviewFolder", acqPreviewFolder);
            fP.SetField("acqThumbnailFolder", acqThumbnailFolder);
            fP.SetField("dataName", dataName);

            // Define acquisition parameters
            MWNumericArray y_0 = acquisitionParameters.y_0;
            MWNumericArray x_0 = acquisitionParameters.x_0;
            MWNumericArray l_y = acquisitionParameters.l_y;
            MWNumericArray l_x = acquisitionParameters.l_x;
            MWNumericArray ds  = acquisitionParameters.ds;
            MWNumericArray PRR = acquisitionParameters.PRR;
            MWNumericArray triggerWidth;

            if (systemState.LASERconnected == 1) // Wedge
            {
                triggerWidth = 130;              // [us]
            }
            else
            {
                triggerWidth = 5;
            }
            MWNumericArray f_s                = acquisitionParameters.f_s;
            MWNumericArray inputRange         = acquisitionParameters.inputRange_list[acquisitionParameters.inputRange_listIndex];
            MWNumericArray z_low              = acquisitionParameters.z_low;
            MWNumericArray z_target           = acquisitionParameters.z_target;
            MWNumericArray z_high             = acquisitionParameters.z_high;
            MWNumericArray v_x                = acquisitionParameters.v_x;
            MWNumericArray acc                = acquisitionParameters.acc;
            MWNumericArray acqDelay           = acquisitionParameters.acqDelay;
            MWNumericArray d_acc              = acquisitionParameters.d_acc;
            MWNumericArray acqRes             = acquisitionParameters.acqRes;
            MWArray        acqMode            = acquisitionParameters.acqMode;
            MWNumericArray triggerLevel       = acquisitionParameters.triggerLevel;
            MWNumericArray numberOfWavelength = acquisitionParameters.numberOfWavelength;


            MWNumericArray BscanUpdate            = acquisitionParameters.BscanUpdate;
            MWArray        controllerSerialNumber = acquisitionParameters.controllerSerialNumber;
            MWNumericArray quickScan = 0;

            // copy file parameters to structure
            string[]      fieldNames2 = { "y_0",    "x_0",                    "l_y",      "l_x",        "ds",
                                          "PRR",         "triggerWidth",           "f_s",      "inputRange", "z_low", "z_target", "z_high",
                                          "v_x",         "acc",                    "acqDelay", "d_acc",      "acqRes","acqMode",  "triggerLevel","numberOfWavelength",
                                          "BscanUpdate", "controllerSerialNumber", "quickScan" };
            MWStructArray aP = new MWStructArray(1, 1, fieldNames2);

            aP.SetField("y_0", y_0);
            aP.SetField("x_0", x_0);
            aP.SetField("l_y", l_y);
            aP.SetField("l_x", l_x);
            aP.SetField("ds", ds);
            aP.SetField("PRR", PRR);
            aP.SetField("triggerWidth", triggerWidth);
            aP.SetField("f_s", f_s);
            aP.SetField("inputRange", inputRange);
            aP.SetField("z_low", z_low);
            aP.SetField("z_target", z_target);
            aP.SetField("z_high", z_high);
            aP.SetField("v_x", v_x);
            aP.SetField("acc", acc);
            aP.SetField("acqDelay", acqDelay);
            aP.SetField("d_acc", d_acc);
            aP.SetField("acqRes", acqRes);
            aP.SetField("acqMode", acqMode);
            aP.SetField("triggerLevel", triggerLevel);
            aP.SetField("numberOfWavelength", numberOfWavelength);
            aP.SetField("BscanUpdate", BscanUpdate);
            aP.SetField("controllerSerialNumber", controllerSerialNumber);
            aP.SetField("quickScan", quickScan);

            // Define reconstruction parameters
            MWNumericArray t_focus = detectorParameters.t_focus;

            // copy file parameters to structure
            string[]      fieldNames3 = { "t_focus" };
            MWStructArray dP          = new MWStructArray(1, 1, fieldNames3);

            dP.SetField("t_focus", t_focus);

            // Define reconstruction parameters
            MWNumericArray v_s = reconstructionParameters.v_s;

            // copy file parameters to structure
            string[]      fieldNames4 = { "v_s" };
            MWStructArray rP          = new MWStructArray(1, 1, fieldNames4);

            rP.SetField("v_s", v_s);

            try
            {
                if (systemState.LASERconnected == 0 || systemState.DAQconnected == 0 || systemState.STAGESconnected == 0)
                {
                    iScanClass_mock obj_mock = null;
                    obj_mock = new iScanClass_mock();
                    obj_mock.iScan_mock(fP, aP, dP, rP);
                }
                else
                {
                    // choose right kernel for stages
                    switch (systemState.DAQconnected)
                    {
                    case 1:     // Gage
                        if (acquisitionParameters.triggerMode == 0)
                        {
                            iScanClass obj = null;
                            obj = new iScanClass();
                            obj.iScan(fP, aP, dP, rP);
                        }
                        else
                        {
                            iScanClass_trig obj_trig = null;
                            obj_trig = new iScanClass_trig();
                            obj_trig.iScan_trig(fP, aP, dP, rP);
                        }
                        break;

                    case 2:     // Alazar
                        if (acquisitionParameters.triggerMode == 0)
                        {
                            iScanClass_Alazar obj_Alazar = null;
                            obj_Alazar = new iScanClass_Alazar();
                            obj_Alazar.iScan_Alazar(fP, aP, dP, rP);
                        }
                        else
                        {
                            Console.WriteLine("ERROR: Alazar external trigger not yet implmented.");
                        }
                        break;

                    default:
                        Console.WriteLine("ERROR: Settings say there is no DAQ connected.");
                        break;
                    }

                    // switch off laser and close connection
                    if (systemState.LASERconnected == 1 || systemState.LASERconnected == 2)
                    {
                        // switch laser off and close connection
                        ondaLaser.EmissionOFF();
                        ondaLaser.closeConnection();
                        cancelAcq_Button.Click -= ondaLaser.laserHandle;
                    }
                }
            }
            catch (Exception e)
            {
                // check if laser emission can be stopped
                if (ondaLaser != null)
                {
                    try
                    {
                        ondaLaser.EmissionOFF();
                        ondaLaser.closeConnection();
                        cancelAcq_Button.Click -= ondaLaser.laserHandle;
                    }
                    catch
                    {
                        Console.WriteLine("WARNING: switch off laser EMISSION if necessary.");
                    };
                }

                if (!e.Message.Contains("ERROR:"))
                {
                    Console.WriteLine("ERROR:" + e.Message);
                }
                Console.WriteLine("\n");
                Console.WriteLine("Status-Acq: 1.00");
            }

            // write xml-file
            XDocument acqXML = new XDocument(
                new XElement("acquisitionParameters",
                             new XElement("l_y", l_y.ToString()),
                             new XElement("l_x", l_x.ToString()),
                             new XElement("ds", ds.ToString()),
                             new XElement("PRR", PRR.ToString()),
                             new XElement("laserEnergy", acquisitionParameters.laserPower.ToString()),
                             new XElement("f_s", f_s.ToString()),
                             new XElement("inputRange", inputRange.ToString()),
                             new XElement("z_low", z_low.ToString()),
                             new XElement("z_high", z_high.ToString()),
                             new XElement("numberOfWavelength", numberOfWavelength.ToString()),
                             new XElement("comment", comment)
                             )
                );

            acqXML.Declaration = new XDeclaration("1.0", "utf-8", "true");

            string filename = acqFolder.ToString() + dataName.ToString() + ".xml";

            acqXML.Save(@filename);

            //// write RSOMpreset xml-file
            //XDocument presetXML = new XDocument(
            //    new XElement("RSOMpreset",
            //        new XElement("laserSettings",
            //            new XElement("energy", acquisitionParameters.laserPower.ToString())
            //            )
            //        )
            //   );

            //presetXML.Declaration = new XDeclaration("1.0", "utf-8", "true");

            //string filenamePreset = System.Environment.GetFolderPath(System.Environment.SpecialFolder.ApplicationData) + "\\iThera\\ViewRSOM\\RSOMpreset.xml";
            //presetXML.Save(@filenamePreset);
        }
예제 #2
0
        public void startMulti(string comment, ViewRSOM.MSOT.Hardware.ViewModels.Laser.ViewModelLaserInnolas multiLaser, Button cancelAcq_Button)
        {
            // Define file parameters
            MWArray acqFolder = fileParameters.studyFolder + "\\" + System.DateTime.Now.Year.ToString("0000") + System.DateTime.Now.Month.ToString("00")
                                + System.DateTime.Now.Day.ToString("00") + "\\";
            MWArray acqQuickScanFolder = acqFolder + "QuickScan\\";
            MWArray acqLogFolder       = acqFolder + "Log\\";
            MWArray acqPreviewFolder   = fileParameters.acqPreviewFolder;
            MWArray acqThumbnailFolder = acqFolder + "Thumbnail\\";
            MWArray dataName;

            if (fileParameters.dataName != null)
            {
                dataName = System.DateTime.Now.Hour.ToString("00") + System.DateTime.Now.Minute.ToString("00") + System.DateTime.Now.Second.ToString("00") + "_" + fileParameters.dataName;
            }
            else
            {
                dataName = System.DateTime.Now.Hour.ToString("00") + System.DateTime.Now.Minute.ToString("00") + System.DateTime.Now.Second.ToString("00");
            }


            // create recon folder
            if (!Directory.Exists(acqFolder.ToString()))
            {
                Directory.CreateDirectory(acqFolder.ToString());
            }
            //else
            //{
            //    Console.Write("WARNING: acquisition folder exists already. Proceed with reconstruction. Previous reconstructions may be overwritten.");
            //}
            if (!Directory.Exists(acqQuickScanFolder.ToString()))
            {
                Directory.CreateDirectory(acqQuickScanFolder.ToString());
            }
            if (!Directory.Exists(acqLogFolder.ToString()))
            {
                Directory.CreateDirectory(acqLogFolder.ToString());
            }
            if (!Directory.Exists(acqPreviewFolder.ToString()))
            {
                Directory.CreateDirectory(acqPreviewFolder.ToString());
            }
            if (!Directory.Exists(acqThumbnailFolder.ToString()))
            {
                Directory.CreateDirectory(acqThumbnailFolder.ToString());
            }

            // copy file parameters to structure
            string[]      fieldNames = { "acqFolder", "acqQuickScanFolder", "acqLogFolder", "acqPreviewFolder", "acqThumbnailFolder", "dataName" };
            MWStructArray fP         = new MWStructArray(1, 1, fieldNames);

            fP.SetField("acqFolder", acqFolder);
            fP.SetField("acqQuickScanFolder", acqQuickScanFolder);
            fP.SetField("acqLogFolder", acqLogFolder);
            fP.SetField("acqPreviewFolder", acqPreviewFolder);
            fP.SetField("acqThumbnailFolder", acqThumbnailFolder);
            fP.SetField("dataName", dataName);

            // Define acquisition parameters
            MWNumericArray y_0 = acquisitionParameters.y_0;
            MWNumericArray x_0 = acquisitionParameters.x_0;
            MWNumericArray l_y = acquisitionParameters.l_y;
            MWNumericArray l_x = acquisitionParameters.l_x;
            MWNumericArray ds  = acquisitionParameters.ds;
            MWNumericArray PRR = acquisitionParameters.PRR;
            MWNumericArray triggerWidth;

            if (systemState.LASERconnected == 1) // Wedge
            {
                triggerWidth = 130;              // [us]
            }
            else
            {
                triggerWidth = 5;
            }
            MWNumericArray f_s                    = acquisitionParameters.f_s;
            MWNumericArray inputRange             = acquisitionParameters.inputRange_list[acquisitionParameters.inputRange_listIndex];
            MWNumericArray z_low                  = acquisitionParameters.z_low;
            MWNumericArray z_target               = acquisitionParameters.z_target;
            MWNumericArray z_high                 = acquisitionParameters.z_high;
            MWNumericArray v_x                    = acquisitionParameters.v_x;
            MWNumericArray acc                    = acquisitionParameters.acc;
            MWNumericArray acqDelay               = acquisitionParameters.acqDelay;
            MWNumericArray d_acc                  = acquisitionParameters.d_acc;
            MWNumericArray acqRes                 = acquisitionParameters.acqRes;
            MWArray        acqMode                = acquisitionParameters.acqMode;
            MWNumericArray triggerLevel           = acquisitionParameters.triggerLevel;
            MWNumericArray numberOfWavelength     = acquisitionParameters.numberOfWavelength;
            MWNumericArray BscanUpdate            = acquisitionParameters.BscanUpdate;
            MWArray        controllerSerialNumber = acquisitionParameters.controllerSerialNumber;
            MWNumericArray quickScan              = 0;

            //get number of wavelength from comment box
            if (!string.IsNullOrEmpty(comment))
            {
                char[]   delimiterChars = { ' ', ',', '.', ':', ';', '\t' };
                string[] tokens         = comment.Split(delimiterChars);
                int[]    convertedItems = Array.ConvertAll <string, int>(tokens, int.Parse);
                numberOfWavelength = convertedItems.Length;
                //Console.WriteLine(convertedItems);
            }
            // copy file parameters to structure
            string[]      fieldNames2 = { "y_0",    "x_0",                    "l_y",      "l_x",        "ds",
                                          "PRR",         "triggerWidth",           "f_s",      "inputRange", "z_low", "z_target", "z_high",
                                          "v_x",         "acc",                    "acqDelay", "d_acc",      "acqRes","acqMode",  "triggerLevel","numberOfWavelength",
                                          "BscanUpdate", "controllerSerialNumber", "quickScan" };
            MWStructArray aP = new MWStructArray(1, 1, fieldNames2);

            aP.SetField("y_0", y_0);
            aP.SetField("x_0", x_0);
            aP.SetField("l_y", l_y);
            aP.SetField("l_x", l_x);
            aP.SetField("ds", ds);
            aP.SetField("PRR", PRR);
            aP.SetField("triggerWidth", triggerWidth);
            aP.SetField("f_s", f_s);
            aP.SetField("inputRange", inputRange);
            aP.SetField("z_low", z_low);
            aP.SetField("z_target", z_target);
            aP.SetField("z_high", z_high);
            aP.SetField("v_x", v_x);
            aP.SetField("acc", acc);
            aP.SetField("acqDelay", acqDelay);
            aP.SetField("d_acc", d_acc);
            aP.SetField("acqRes", acqRes);
            aP.SetField("acqMode", acqMode);
            aP.SetField("triggerLevel", triggerLevel);
            aP.SetField("numberOfWavelength", numberOfWavelength);
            aP.SetField("BscanUpdate", BscanUpdate);
            aP.SetField("controllerSerialNumber", controllerSerialNumber);
            aP.SetField("quickScan", quickScan);

            // Define reconstruction parameters
            MWNumericArray t_focus = detectorParameters.t_focus;

            // copy file parameters to structure
            string[]      fieldNames3 = { "t_focus" };
            MWStructArray dP          = new MWStructArray(1, 1, fieldNames3);

            dP.SetField("t_focus", t_focus);

            // Define reconstruction parameters
            MWNumericArray v_s = reconstructionParameters.v_s;

            // copy file parameters to structure
            string[]      fieldNames4 = { "v_s" };
            MWStructArray rP          = new MWStructArray(1, 1, fieldNames4);

            rP.SetField("v_s", v_s);

            try
            {
                //if (systemState.LASERconnected == 0 || systemState.DAQconnected == 0 || systemState.STAGESconnected == 0)
                if (systemState.DAQconnected == 0 || systemState.STAGESconnected == 0)
                {
                    iScanClass_mock obj_mock = null;
                    obj_mock = new iScanClass_mock();
                    obj_mock.iScan_mock(fP, aP, dP, rP);
                }
                else
                {
                    // choose right kernel for stages
                    switch (systemState.DAQconnected)
                    {
                    case 1:     // Gage

                        if (acquisitionParameters.triggerMode == 0)
                        {
                            iScanClass_OPO obj = null;
                            obj = new iScanClass_OPO();
                            obj.iScan_dual(fP, aP, dP, rP);
                        }
                        else
                        {
                            iScanClass_trig obj_trig = null;
                            obj_trig = new iScanClass_trig();
                            obj_trig.iScan_trig(fP, aP, dP, rP);
                        }
                        break;

                    case 2:     // Alazar
                        if (acquisitionParameters.triggerMode == 0)
                        {
                            iScanClass_Alazar obj_Alazar = null;
                            obj_Alazar = new iScanClass_Alazar();
                            obj_Alazar.iScan_Alazar(fP, aP, dP, rP);
                        }
                        else
                        {
                            Console.WriteLine("ERROR: Alazar external trigger not yet implmented.");
                        }
                        break;

                    default:
                        Console.WriteLine("ERROR: Settings say there is no DAQ connected.");
                        break;
                    }

                    // switch off laser and close connection
                    //if (systemState.LASERconnected == 1 || systemState.LASERconnected == 2)
                    {
                        // switch laser off and close connection
                        multiLaser.q_switch(false);

                        multiLaser.lamp(false);
                        //cancelAcq_Button.Click -= multiLaser.laserHandle;
                    }
                }
            }
            catch (Exception e)
            {
                // check if laser emission can be stopped
                if (multiLaser != null)
                {
                    try
                    {
                        multiLaser.q_switch(false);
                        multiLaser.lamp(false);
                        //cancelAcq_Button.Click -= multiLaser.laserHandle;
                    }
                    catch
                    {
                        Console.WriteLine("WARNING: switch off laser EMISSION if necessary.");
                    };
                }

                if (!e.Message.Contains("ERROR:"))
                {
                    Console.WriteLine("ERROR:" + e.Message);
                }
                Console.WriteLine("\n");
                Console.WriteLine("Status-Acq: 1.00");
            }

            // write xml-file
            XDocument acqXML = new XDocument(
                new XElement("acquisitionParameters",
                             new XElement("l_y", l_y.ToString()),
                             new XElement("l_x", l_x.ToString()),
                             new XElement("ds", ds.ToString()),
                             new XElement("PRR", PRR.ToString()),
                             new XElement("laserEnergy", acquisitionParameters.laserPower.ToString()),
                             new XElement("f_s", f_s.ToString()),
                             new XElement("inputRange", inputRange.ToString()),
                             new XElement("z_low", z_low.ToString()),
                             new XElement("z_high", z_high.ToString()),
                             new XElement("numberOfWavelength", numberOfWavelength.ToString()),
                             new XElement("comment", comment)
                             )
                );

            acqXML.Declaration = new XDeclaration("1.0", "utf-8", "true");

            string filename = acqFolder.ToString() + dataName.ToString() + ".xml";

            acqXML.Save(@filename);
        }