public void start(string comment, Hardware.LaserSW.ViewModelBrightSolutions ondaLaser, Button cancelAcq_Button)
{
// Define file parameters
MWArray acqFolder = fileParameters.studyFolder + "\\" + System.DateTime.Now.Year.ToString("0000") + System.DateTime.Now.Month.ToString("00")
+ System.DateTime.Now.Day.ToString("00") + "\\";
MWArray acqQuickScanFolder = acqFolder + "QuickScan\\";
MWArray acqLogFolder = acqFolder + "Log\\";
MWArray acqPreviewFolder = fileParameters.acqPreviewFolder;
MWArray acqThumbnailFolder = acqFolder + "Thumbnail\\";
MWArray dataName;
if (fileParameters.dataName != null)
{
dataName = System.DateTime.Now.Hour.ToString("00") + System.DateTime.Now.Minute.ToString("00") + System.DateTime.Now.Second.ToString("00") + "_" + fileParameters.dataName;
}
else
{
dataName = System.DateTime.Now.Hour.ToString("00") + System.DateTime.Now.Minute.ToString("00") + System.DateTime.Now.Second.ToString("00");
}
// create recon folder
if (!Directory.Exists(acqFolder.ToString()))
{
Directory.CreateDirectory(acqFolder.ToString());
}
if (!Directory.Exists(acqQuickScanFolder.ToString()))
{
Directory.CreateDirectory(acqQuickScanFolder.ToString());
}
if (!Directory.Exists(acqLogFolder.ToString()))
{
Directory.CreateDirectory(acqLogFolder.ToString());
}
if (!Directory.Exists(acqPreviewFolder.ToString()))
{
Directory.CreateDirectory(acqPreviewFolder.ToString());
}
if (!Directory.Exists(acqThumbnailFolder.ToString()))
{
Directory.CreateDirectory(acqThumbnailFolder.ToString());
}
// copy file parameters to structure
string[] fieldNames = { "acqFolder", "acqQuickScanFolder", "acqLogFolder", "acqPreviewFolder", "acqThumbnailFolder", "dataName" };
MWStructArray fP = new MWStructArray(1, 1, fieldNames);
fP.SetField("acqFolder", acqFolder);
fP.SetField("acqQuickScanFolder", acqQuickScanFolder);
fP.SetField("acqLogFolder", acqLogFolder);
fP.SetField("acqPreviewFolder", acqPreviewFolder);
fP.SetField("acqThumbnailFolder", acqThumbnailFolder);
fP.SetField("dataName", dataName);
// Define acquisition parameters
MWNumericArray y_0 = acquisitionParameters.y_0;
MWNumericArray x_0 = acquisitionParameters.x_0;
MWNumericArray l_y = acquisitionParameters.l_y;
MWNumericArray l_x = acquisitionParameters.l_x;
MWNumericArray ds = acquisitionParameters.ds;
MWNumericArray PRR = acquisitionParameters.PRR;
MWNumericArray triggerWidth;
if (systemState.LASERconnected == 1) // Wedge
{
triggerWidth = 130; // [us]
}
else
{
triggerWidth = 5;
}
MWNumericArray f_s = acquisitionParameters.f_s;
MWNumericArray inputRange = acquisitionParameters.inputRange_list[acquisitionParameters.inputRange_listIndex];
MWNumericArray z_low = acquisitionParameters.z_low;
MWNumericArray z_target = acquisitionParameters.z_target;
MWNumericArray z_high = acquisitionParameters.z_high;
MWNumericArray v_x = acquisitionParameters.v_x;
MWNumericArray acc = acquisitionParameters.acc;
MWNumericArray acqDelay = acquisitionParameters.acqDelay;
MWNumericArray d_acc = acquisitionParameters.d_acc;
MWNumericArray acqRes = acquisitionParameters.acqRes;
MWArray acqMode = acquisitionParameters.acqMode;
MWNumericArray triggerLevel = acquisitionParameters.triggerLevel;
MWNumericArray numberOfWavelength = acquisitionParameters.numberOfWavelength;
MWNumericArray BscanUpdate = acquisitionParameters.BscanUpdate;
MWArray controllerSerialNumber = acquisitionParameters.controllerSerialNumber;
MWNumericArray quickScan = 0;
// copy file parameters to structure
string[] fieldNames2 = { "y_0", "x_0", "l_y", "l_x", "ds",
"PRR", "triggerWidth", "f_s", "inputRange", "z_low", "z_target", "z_high",
"v_x", "acc", "acqDelay", "d_acc", "acqRes","acqMode", "triggerLevel","numberOfWavelength",
"BscanUpdate", "controllerSerialNumber", "quickScan" };
MWStructArray aP = new MWStructArray(1, 1, fieldNames2);
aP.SetField("y_0", y_0);
aP.SetField("x_0", x_0);
aP.SetField("l_y", l_y);
aP.SetField("l_x", l_x);
aP.SetField("ds", ds);
aP.SetField("PRR", PRR);
aP.SetField("triggerWidth", triggerWidth);
aP.SetField("f_s", f_s);
aP.SetField("inputRange", inputRange);
aP.SetField("z_low", z_low);
aP.SetField("z_target", z_target);
aP.SetField("z_high", z_high);
aP.SetField("v_x", v_x);
aP.SetField("acc", acc);
aP.SetField("acqDelay", acqDelay);
aP.SetField("d_acc", d_acc);
aP.SetField("acqRes", acqRes);
aP.SetField("acqMode", acqMode);
aP.SetField("triggerLevel", triggerLevel);
aP.SetField("numberOfWavelength", numberOfWavelength);
aP.SetField("BscanUpdate", BscanUpdate);
aP.SetField("controllerSerialNumber", controllerSerialNumber);
aP.SetField("quickScan", quickScan);
// Define reconstruction parameters
MWNumericArray t_focus = detectorParameters.t_focus;
// copy file parameters to structure
string[] fieldNames3 = { "t_focus" };
MWStructArray dP = new MWStructArray(1, 1, fieldNames3);
dP.SetField("t_focus", t_focus);
// Define reconstruction parameters
MWNumericArray v_s = reconstructionParameters.v_s;
// copy file parameters to structure
string[] fieldNames4 = { "v_s" };
MWStructArray rP = new MWStructArray(1, 1, fieldNames4);
rP.SetField("v_s", v_s);
try
{
if (systemState.LASERconnected == 0 || systemState.DAQconnected == 0 || systemState.STAGESconnected == 0)
{
iScanClass_mock obj_mock = null;
obj_mock = new iScanClass_mock();
obj_mock.iScan_mock(fP, aP, dP, rP);
}
else
{
// choose right kernel for stages
switch (systemState.DAQconnected)
{
case 1: // Gage
if (acquisitionParameters.triggerMode == 0)
{
iScanClass obj = null;
obj = new iScanClass();
obj.iScan(fP, aP, dP, rP);
}
else
{
iScanClass_trig obj_trig = null;
obj_trig = new iScanClass_trig();
obj_trig.iScan_trig(fP, aP, dP, rP);
}
break;
case 2: // Alazar
if (acquisitionParameters.triggerMode == 0)
{
iScanClass_Alazar obj_Alazar = null;
obj_Alazar = new iScanClass_Alazar();
obj_Alazar.iScan_Alazar(fP, aP, dP, rP);
}
else
{
Console.WriteLine("ERROR: Alazar external trigger not yet implmented.");
}
break;
default:
Console.WriteLine("ERROR: Settings say there is no DAQ connected.");
break;
}
// switch off laser and close connection
if (systemState.LASERconnected == 1 || systemState.LASERconnected == 2)
{
// switch laser off and close connection
ondaLaser.EmissionOFF();
ondaLaser.closeConnection();
cancelAcq_Button.Click -= ondaLaser.laserHandle;
}
}
}
catch (Exception e)
{
// check if laser emission can be stopped
if (ondaLaser != null)
{
try
{
ondaLaser.EmissionOFF();
ondaLaser.closeConnection();
cancelAcq_Button.Click -= ondaLaser.laserHandle;
}
catch
{
Console.WriteLine("WARNING: switch off laser EMISSION if necessary.");
};
}
if (!e.Message.Contains("ERROR:"))
{
Console.WriteLine("ERROR:" + e.Message);
}
Console.WriteLine("\n");
Console.WriteLine("Status-Acq: 1.00");
}
// write xml-file
XDocument acqXML = new XDocument(
new XElement("acquisitionParameters",
new XElement("l_y", l_y.ToString()),
new XElement("l_x", l_x.ToString()),
new XElement("ds", ds.ToString()),
new XElement("PRR", PRR.ToString()),
new XElement("laserEnergy", acquisitionParameters.laserPower.ToString()),
new XElement("f_s", f_s.ToString()),
new XElement("inputRange", inputRange.ToString()),
new XElement("z_low", z_low.ToString()),
new XElement("z_high", z_high.ToString()),
new XElement("numberOfWavelength", numberOfWavelength.ToString()),
new XElement("comment", comment)
)
);
acqXML.Declaration = new XDeclaration("1.0", "utf-8", "true");
string filename = acqFolder.ToString() + dataName.ToString() + ".xml";
acqXML.Save(@filename);
//// write RSOMpreset xml-file
//XDocument presetXML = new XDocument(
// new XElement("RSOMpreset",
// new XElement("laserSettings",
// new XElement("energy", acquisitionParameters.laserPower.ToString())
// )
// )
// );
//presetXML.Declaration = new XDeclaration("1.0", "utf-8", "true");
//string filenamePreset = System.Environment.GetFolderPath(System.Environment.SpecialFolder.ApplicationData) + "\\iThera\\ViewRSOM\\RSOMpreset.xml";
//presetXML.Save(@filenamePreset);
}
public void startMulti(string comment, ViewRSOM.MSOT.Hardware.ViewModels.Laser.ViewModelLaserInnolas multiLaser, Button cancelAcq_Button)
{
// Define file parameters
MWArray acqFolder = fileParameters.studyFolder + "\\" + System.DateTime.Now.Year.ToString("0000") + System.DateTime.Now.Month.ToString("00")
+ System.DateTime.Now.Day.ToString("00") + "\\";
MWArray acqQuickScanFolder = acqFolder + "QuickScan\\";
MWArray acqLogFolder = acqFolder + "Log\\";
MWArray acqPreviewFolder = fileParameters.acqPreviewFolder;
MWArray acqThumbnailFolder = acqFolder + "Thumbnail\\";
MWArray dataName;
if (fileParameters.dataName != null)
{
dataName = System.DateTime.Now.Hour.ToString("00") + System.DateTime.Now.Minute.ToString("00") + System.DateTime.Now.Second.ToString("00") + "_" + fileParameters.dataName;
}
else
{
dataName = System.DateTime.Now.Hour.ToString("00") + System.DateTime.Now.Minute.ToString("00") + System.DateTime.Now.Second.ToString("00");
}
// create recon folder
if (!Directory.Exists(acqFolder.ToString()))
{
Directory.CreateDirectory(acqFolder.ToString());
}
//else
//{
// Console.Write("WARNING: acquisition folder exists already. Proceed with reconstruction. Previous reconstructions may be overwritten.");
//}
if (!Directory.Exists(acqQuickScanFolder.ToString()))
{
Directory.CreateDirectory(acqQuickScanFolder.ToString());
}
if (!Directory.Exists(acqLogFolder.ToString()))
{
Directory.CreateDirectory(acqLogFolder.ToString());
}
if (!Directory.Exists(acqPreviewFolder.ToString()))
{
Directory.CreateDirectory(acqPreviewFolder.ToString());
}
if (!Directory.Exists(acqThumbnailFolder.ToString()))
{
Directory.CreateDirectory(acqThumbnailFolder.ToString());
}
// copy file parameters to structure
string[] fieldNames = { "acqFolder", "acqQuickScanFolder", "acqLogFolder", "acqPreviewFolder", "acqThumbnailFolder", "dataName" };
MWStructArray fP = new MWStructArray(1, 1, fieldNames);
fP.SetField("acqFolder", acqFolder);
fP.SetField("acqQuickScanFolder", acqQuickScanFolder);
fP.SetField("acqLogFolder", acqLogFolder);
fP.SetField("acqPreviewFolder", acqPreviewFolder);
fP.SetField("acqThumbnailFolder", acqThumbnailFolder);
fP.SetField("dataName", dataName);
// Define acquisition parameters
MWNumericArray y_0 = acquisitionParameters.y_0;
MWNumericArray x_0 = acquisitionParameters.x_0;
MWNumericArray l_y = acquisitionParameters.l_y;
MWNumericArray l_x = acquisitionParameters.l_x;
MWNumericArray ds = acquisitionParameters.ds;
MWNumericArray PRR = acquisitionParameters.PRR;
MWNumericArray triggerWidth;
if (systemState.LASERconnected == 1) // Wedge
{
triggerWidth = 130; // [us]
}
else
{
triggerWidth = 5;
}
MWNumericArray f_s = acquisitionParameters.f_s;
MWNumericArray inputRange = acquisitionParameters.inputRange_list[acquisitionParameters.inputRange_listIndex];
MWNumericArray z_low = acquisitionParameters.z_low;
MWNumericArray z_target = acquisitionParameters.z_target;
MWNumericArray z_high = acquisitionParameters.z_high;
MWNumericArray v_x = acquisitionParameters.v_x;
MWNumericArray acc = acquisitionParameters.acc;
MWNumericArray acqDelay = acquisitionParameters.acqDelay;
MWNumericArray d_acc = acquisitionParameters.d_acc;
MWNumericArray acqRes = acquisitionParameters.acqRes;
MWArray acqMode = acquisitionParameters.acqMode;
MWNumericArray triggerLevel = acquisitionParameters.triggerLevel;
MWNumericArray numberOfWavelength = acquisitionParameters.numberOfWavelength;
MWNumericArray BscanUpdate = acquisitionParameters.BscanUpdate;
MWArray controllerSerialNumber = acquisitionParameters.controllerSerialNumber;
MWNumericArray quickScan = 0;
//get number of wavelength from comment box
if (!string.IsNullOrEmpty(comment))
{
char[] delimiterChars = { ' ', ',', '.', ':', ';', '\t' };
string[] tokens = comment.Split(delimiterChars);
int[] convertedItems = Array.ConvertAll <string, int>(tokens, int.Parse);
numberOfWavelength = convertedItems.Length;
//Console.WriteLine(convertedItems);
}
// copy file parameters to structure
string[] fieldNames2 = { "y_0", "x_0", "l_y", "l_x", "ds",
"PRR", "triggerWidth", "f_s", "inputRange", "z_low", "z_target", "z_high",
"v_x", "acc", "acqDelay", "d_acc", "acqRes","acqMode", "triggerLevel","numberOfWavelength",
"BscanUpdate", "controllerSerialNumber", "quickScan" };
MWStructArray aP = new MWStructArray(1, 1, fieldNames2);
aP.SetField("y_0", y_0);
aP.SetField("x_0", x_0);
aP.SetField("l_y", l_y);
aP.SetField("l_x", l_x);
aP.SetField("ds", ds);
aP.SetField("PRR", PRR);
aP.SetField("triggerWidth", triggerWidth);
aP.SetField("f_s", f_s);
aP.SetField("inputRange", inputRange);
aP.SetField("z_low", z_low);
aP.SetField("z_target", z_target);
aP.SetField("z_high", z_high);
aP.SetField("v_x", v_x);
aP.SetField("acc", acc);
aP.SetField("acqDelay", acqDelay);
aP.SetField("d_acc", d_acc);
aP.SetField("acqRes", acqRes);
aP.SetField("acqMode", acqMode);
aP.SetField("triggerLevel", triggerLevel);
aP.SetField("numberOfWavelength", numberOfWavelength);
aP.SetField("BscanUpdate", BscanUpdate);
aP.SetField("controllerSerialNumber", controllerSerialNumber);
aP.SetField("quickScan", quickScan);
// Define reconstruction parameters
MWNumericArray t_focus = detectorParameters.t_focus;
// copy file parameters to structure
string[] fieldNames3 = { "t_focus" };
MWStructArray dP = new MWStructArray(1, 1, fieldNames3);
dP.SetField("t_focus", t_focus);
// Define reconstruction parameters
MWNumericArray v_s = reconstructionParameters.v_s;
// copy file parameters to structure
string[] fieldNames4 = { "v_s" };
MWStructArray rP = new MWStructArray(1, 1, fieldNames4);
rP.SetField("v_s", v_s);
try
{
//if (systemState.LASERconnected == 0 || systemState.DAQconnected == 0 || systemState.STAGESconnected == 0)
if (systemState.DAQconnected == 0 || systemState.STAGESconnected == 0)
{
iScanClass_mock obj_mock = null;
obj_mock = new iScanClass_mock();
obj_mock.iScan_mock(fP, aP, dP, rP);
}
else
{
// choose right kernel for stages
switch (systemState.DAQconnected)
{
case 1: // Gage
if (acquisitionParameters.triggerMode == 0)
{
iScanClass_OPO obj = null;
obj = new iScanClass_OPO();
obj.iScan_dual(fP, aP, dP, rP);
}
else
{
iScanClass_trig obj_trig = null;
obj_trig = new iScanClass_trig();
obj_trig.iScan_trig(fP, aP, dP, rP);
}
break;
case 2: // Alazar
if (acquisitionParameters.triggerMode == 0)
{
iScanClass_Alazar obj_Alazar = null;
obj_Alazar = new iScanClass_Alazar();
obj_Alazar.iScan_Alazar(fP, aP, dP, rP);
}
else
{
Console.WriteLine("ERROR: Alazar external trigger not yet implmented.");
}
break;
default:
Console.WriteLine("ERROR: Settings say there is no DAQ connected.");
break;
}
// switch off laser and close connection
//if (systemState.LASERconnected == 1 || systemState.LASERconnected == 2)
{
// switch laser off and close connection
multiLaser.q_switch(false);
multiLaser.lamp(false);
//cancelAcq_Button.Click -= multiLaser.laserHandle;
}
}
}
catch (Exception e)
{
// check if laser emission can be stopped
if (multiLaser != null)
{
try
{
multiLaser.q_switch(false);
multiLaser.lamp(false);
//cancelAcq_Button.Click -= multiLaser.laserHandle;
}
catch
{
Console.WriteLine("WARNING: switch off laser EMISSION if necessary.");
};
}
if (!e.Message.Contains("ERROR:"))
{
Console.WriteLine("ERROR:" + e.Message);
}
Console.WriteLine("\n");
Console.WriteLine("Status-Acq: 1.00");
}
// write xml-file
XDocument acqXML = new XDocument(
new XElement("acquisitionParameters",
new XElement("l_y", l_y.ToString()),
new XElement("l_x", l_x.ToString()),
new XElement("ds", ds.ToString()),
new XElement("PRR", PRR.ToString()),
new XElement("laserEnergy", acquisitionParameters.laserPower.ToString()),
new XElement("f_s", f_s.ToString()),
new XElement("inputRange", inputRange.ToString()),
new XElement("z_low", z_low.ToString()),
new XElement("z_high", z_high.ToString()),
new XElement("numberOfWavelength", numberOfWavelength.ToString()),
new XElement("comment", comment)
)
);
acqXML.Declaration = new XDeclaration("1.0", "utf-8", "true");
string filename = acqFolder.ToString() + dataName.ToString() + ".xml";
acqXML.Save(@filename);
}