public void VirtualSequenceClone()
{
VirtualSequence virtualSeq = new VirtualSequence(Alphabets.DNA);
string id = Guid.NewGuid().ToString(String.Empty);
virtualSeq.ID = id;
virtualSeq.DisplayID = "Id to display";
virtualSeq.MoleculeType = MoleculeType.DNA;
// Test cloning of data in Metadata property.
virtualSeq.Metadata.Add("NotCloneable", Alphabets.DNA);
Sequence seqCloneable = new Sequence(Alphabets.RNA);
virtualSeq.Metadata.Add("CloneableValue", seqCloneable);
VirtualSequence cloneCopy1 = virtualSeq.Clone();
Assert.AreNotSame(cloneCopy1, virtualSeq);
Assert.AreEqual(virtualSeq.ID, cloneCopy1.ID);
Assert.AreEqual(virtualSeq.DisplayID, cloneCopy1.DisplayID);
Assert.AreEqual(virtualSeq.MoleculeType, cloneCopy1.MoleculeType);
Assert.AreNotSame(virtualSeq.Metadata, cloneCopy1.Metadata);
Assert.AreSame(virtualSeq.Metadata["NotCloneable"], cloneCopy1.Metadata["NotCloneable"]);
Assert.AreNotSame(virtualSeq.Metadata["CloneableValue"], cloneCopy1.Metadata["CloneableValue"]);
}
public void ValidateVirtualSequenceGetObjectData()
{
ISequence virSeq =
new VirtualSequence(Alphabets.DNA);
SerializationInfo info =
new SerializationInfo(typeof(Sequence),
new FormatterConverter());
StreamingContext context =
new StreamingContext(StreamingContextStates.All);
// Serialize the target object
virSeq.GetObjectData(info, context);
Assert.IsNull(info.GetValue(
string.Format("{0}:{1}",
Constants.VirtualSequence, Constants.Documentation),
typeof(object)));
Assert.IsNotNull(info.GetValue(
string.Format("{0}:{1}",
Constants.VirtualSequence, Constants.SeqInfo),
typeof(BasicSequenceInfo)));
Assert.IsNotNull(info.GetValue(
string.Format("{0}:{1}",
Constants.VirtualSequence, Constants.MoleculeType),
typeof(MoleculeType)));
Assert.AreEqual(null, info.GetValue(
string.Format("{0}:{1}",
Constants.VirtualSequence, Constants.Documentation),
typeof(object)));
Assert.AreEqual(
Constants.MBFBasicSequenceInfo,
info.GetValue(
string.Format("{0}:{1}",
Constants.VirtualSequence, Constants.SeqInfo),
typeof(BasicSequenceInfo)).ToString());
Assert.AreEqual(MoleculeType.Invalid,
info.GetValue(
string.Format("{0}:{1}",
Constants.VirtualSequence, Constants.MoleculeType),
typeof(MoleculeType)));
// Create a copy of Virtual Sequence
object seqClone = virSeq.Clone();
Assert.IsNotNull(seqClone);
Assert.IsNotNull(seqClone);
Assert.AreEqual(
((MBF.VirtualSequence)(seqClone)).Alphabet, Alphabets.DNA);
Assert.AreEqual(
((MBF.VirtualSequence)(seqClone)).Documentation, null);
Assert.AreEqual(
((MBF.VirtualSequence)(seqClone)).IsReadOnly, true);
Assert.AreEqual(
((MBF.VirtualSequence)(seqClone)).MoleculeType, MoleculeType.Invalid);
Assert.AreEqual(
((MBF.VirtualSequence)(seqClone)).UseEncoding, false);
}
/// <summary>
/// General method to validate creation of clone virtual seqeunce.
/// <param name="nodeName">xml node name.</param>
/// </summary>
void ValidateGeneralVirtualSequenceCloning(
string nodeName)
{
// Gets alphabet and properties from the Xml
string alphabet = _utilityObj._xmlUtil.GetTextValue(
nodeName, Constants.AlphabetNameNode);
string id = _utilityObj._xmlUtil.GetTextValue(
nodeName, Constants.Id);
string diplayId = _utilityObj._xmlUtil.GetTextValue(
nodeName, Constants.DisplayId);
string expectedDocumentaion = _utilityObj._xmlUtil.GetTextValue(
nodeName, Constants.Documentaion);
// Logs information to the log file
ApplicationLog.WriteLine(string.Format((IFormatProvider)null,
"Virtual Sequence P1: Sequence {0} is expected.", alphabet));
// Create virtual seqeunce for an alphabet.
VirtualSequence virtualSeq = new VirtualSequence(
Utility.GetAlphabet(alphabet));
// Set the value to virtual sequences.
virtualSeq.ID = id;
virtualSeq.DisplayID = diplayId;
virtualSeq.Documentation = expectedDocumentaion;
// Create a copy of virtual seqeunce.
VirtualSequence cloneVirtualSeq = virtualSeq.Clone();
// Validate the created clone virtual Sequence
Assert.AreEqual(virtualSeq.DisplayID, cloneVirtualSeq.DisplayID);
Assert.AreEqual(virtualSeq.ID, cloneVirtualSeq.ID);
Assert.AreEqual(virtualSeq.Documentation, cloneVirtualSeq.Documentation);
Assert.AreNotSame(virtualSeq, cloneVirtualSeq);
Assert.AreEqual(virtualSeq.Alphabet, cloneVirtualSeq.Alphabet);
Assert.AreEqual(virtualSeq.Count, cloneVirtualSeq.Count);
Assert.AreEqual(virtualSeq.Statistics, cloneVirtualSeq.Statistics);
// Logs to the NUnit GUI (Console.Out) window
Console.WriteLine(string.Format((IFormatProvider)null,
" VirtualSequence P1: Clone Virtual Sequence ID {0} is as expected.",
cloneVirtualSeq.ID.ToString((IFormatProvider)null)));
Console.WriteLine(string.Format((IFormatProvider)null,
" VirtualSequence P1: Clone Virtual Sequence Display ID {0} is as expected.",
cloneVirtualSeq.DisplayID.ToString((IFormatProvider)null)));
Console.WriteLine(string.Format((IFormatProvider)null,
" VirtualSequence P1:Clone Virtual Sequence count {0} is as expected.",
cloneVirtualSeq.Count.ToString((IFormatProvider)null)));
// Logs to the NUnit GUI (Console.Out) window
Console.WriteLine(
"Virtual Sequence P1:Clone Virtual Sequence validation is completed successfully.");
}