public Dictionary <int, FeatureSet> GetFeaturesMultiThreading(int minTargetBin, int maxTargetBin, Tolerance tolerance, DataReader.FrameType frameType)
{
var featureDictionary = new Dictionary <int, FeatureSet>();
var targetMzList = Enumerable.Range(minTargetBin, maxTargetBin - minTargetBin + 1).Select(targetBin => _uimfUtil.GetMzFromBin(targetBin)).ToList();
var featureStatisticsDictionary = _featureDetectionUtil.GetFeatureStatistics(targetMzList, tolerance.GetValue(), frameType,
tolerance.GetUnit() == ToleranceUnit.Ppm ? DataReader.ToleranceType.PPM : DataReader.ToleranceType.Thomson);
foreach (var entry in featureStatisticsDictionary)
{
var targetBin = _uimfUtil.GetBinFromMz(entry.Key);
var featureStats = entry.Value;
featureDictionary.Add(targetBin, new FeatureSet(featureStats));
}
return(featureDictionary);
}
public void TestDoWaterShedAlgorithmAllBins()
{
var fileLocation = @"\\proto-2\UnitTest_Files\MultidimensionalFeatureFinding\BSA_10ugml_IMS6_TOF03_CID_27Aug12_Frodo_Collision_Energy_Collapsed.UIMF";
var uimfUtil = new UimfUtil(fileLocation);
// ReSharper disable once UnusedVariable
var numberOfBins = uimfUtil.GetNumberOfBins();
var smoother = new SavitzkyGolaySmoother(5, 2);
for (var i = 73009; i <= 84000; i++)
{
var mz = uimfUtil.GetMzFromBin(i);
var intensityPointList = uimfUtil.GetXic(mz, 25, UIMFData.FrameType.MS1, DataReader.ToleranceType.PPM);
//List<IntensityPoint> intensityPointList = uimfUtil.GetXic(i, DataReader.FrameType.MS1);
//SavitzkyGolaySmoother smoother = new SavitzkyGolaySmoother(9, 2);
//smoother.Smooth(ref intensityBlock);
//int boundX = intensityBlock.GetUpperBound(0);
//int boundY = intensityBlock.GetUpperBound(1);
//TextWriter smoothedWriter = new StreamWriter("smoothedRaw.csv");
//for (int j = 0; j < boundX; j++)
//{
// StringBuilder row = new StringBuilder();
// for (int k = 0; k < boundY; k++)
// {
// row.Append(intensityBlock[j, k] + ",");
// }
// smoothedWriter.WriteLine(row.ToString());
//}
//smoothedWriter.Close();
var pointList = WaterShedMapUtil.BuildWatershedMap(intensityPointList);
smoother.Smooth(ref pointList);
var featureList = FeatureDetection.DoWatershedAlgorithm(pointList);
Console.WriteLine(DateTime.Now + "\tBin = " + i + "\tNumPoints = " + pointList.Count() + "\tNumFeatures = " + featureList.Count());
}
}