protected override void ClearItems()
{
CombinedScore = 0;
IdentifiedCount = 0;
TransitionGroupPeakData.Clear();
AnalyteGroupPeakData.Clear();
StandardGroupPeakData.Clear();
base.ClearItems();
}
protected override void InsertItem(int index, PeptideChromDataPeak item)
{
AddPeak(item);
GetChangeList(item).Add(item);
TransitionGroupPeakData.Insert(index, item);
base.InsertItem(index, item);
}
public PeptidePeakDataConverter(IPeptidePeakData <TData> peptidePeakData)
{
_peptidePeakData = peptidePeakData;
var groupPeakData = _peptidePeakData.TransitionGroupPeakData;
TransitionGroupPeakData = groupPeakData == null ? new List <ITransitionGroupPeakData <ISummaryPeakData> >()
: groupPeakData.Select(gp =>
new TransitionGroupPeakDataConverter <TData>(gp) as ITransitionGroupPeakData <ISummaryPeakData>).ToList();
AnalyteGroupPeakData = TransitionGroupPeakData.Where(t => !t.IsStandard).ToArray();
StandardGroupPeakData = TransitionGroupPeakData.Where(t => t.IsStandard).ToArray();
}
protected override void RemoveItem(int index)
{
SubtractPeak(this[index]);
var tranGroupPeakData = TransitionGroupPeakData[index];
GetChangeList(tranGroupPeakData).Remove(tranGroupPeakData);
TransitionGroupPeakData.RemoveAt(index);
base.RemoveItem(index);
}
public float GetScore(PeakScoringContext context, IPeakFeatureCalculator calc)
{
var summaryCalc = calc as SummaryPeakFeatureCalculator;
if (summaryCalc != null)
{
return(summaryCalc.Calculate(context, this));
}
var groupPeakData = TransitionGroupPeakData.FirstOrDefault() as SummaryTransitionGroupPeakData;
if (groupPeakData != null)
{
return(groupPeakData.GetScore(calc.GetType()));
}
return(float.NaN);
}
