예제 #1
0
        public void ParseCommonOptions_WithRequiredArguments_ReturnsSuccessfulResult(TemporaryDirectoryFixture tempDirectory)
        {
            // arrange
            Option <CommonOptions> commonOptionsParser = new CommonOptionsParser();
            var kmerFasta  = tempDirectory.CreateFile("kmer.fa");
            var bAlleleVcf = tempDirectory.GetFileLocation("ballele.vcf").Touch();
            var filterBed  = tempDirectory.GetFileLocation("filter.bed").Touch();
            var output     = tempDirectory.CreateSubdirectory("output");
            var genome     = tempDirectory.CreateSubdirectory("WholeGenomeFasta");

            string[] stringInputArgument =
            {
                "-r", kmerFasta.ToString(), "-o", output.ToString(), "-g", genome.ToString(), "--b-allele-vcf", bAlleleVcf.ToString(), "--filter-bed", filterBed.ToString(), "--sample-name", "SampleName"
            };

            // act
            ParsingResult <CommonOptions> result = commonOptionsParser.Parse(stringInputArgument);

            // assert
            Assert.Equal("", result.ErrorMessage);
            Assert.True(result.Success);
            Assert.Equal(kmerFasta, result.Result.KmerFasta);
            Assert.Equal(output, result.Result.OutputDirectory);
            Assert.Equal(genome, result.Result.WholeGenomeFasta);
        }
예제 #2
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        public void ParseMultiFileOption_WithMultipleFileArguments_ReturnsListOfFileLocations(TemporaryDirectoryFixture tempDirectory)
        {
            // arrange
            MultiValueOption <IFileLocation> multiFileOption = new MultiValueOption <IFileLocation>(FileOption.CreateRequired("multiple files", "file"));
            var file1 = tempDirectory.CreateFile("file1");
            var file2 = tempDirectory.CreateFile("file2");

            string[] args =
            {
                "--file", file1.ToString(), "--file", file2.ToString()
            };

            // act
            var result = multiFileOption.Parse(args);

            // assert
            Assert.Equal("", result.ErrorMessage);
            Assert.True(result.Success);
            Assert.Equal(file1, result.Result[0]);
            Assert.Equal(file2, result.Result[1]);
        }
예제 #3
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        public void ParseExclusiveOption_WithOnlyTwoOption_ReturnsFailedParseResult(TemporaryDirectoryFixture tempDirectory)
        {
            FileOption option1 = FileOption.CreateRequired("file1 option", "file1");
            FileOption option2 = FileOption.CreateRequired("file2 option", "file2");
            // arrange
            ExclusiveFileOption multiFileOption = ExclusiveFileOption.CreateRequired(option1, option2);
            var file1 = tempDirectory.CreateFile("file1");

            string[] args =
            {
                "--file1", file1.ToString(), "--file2", file1.ToString()
            };

            // act
            var result = multiFileOption.Parse(args);

            // assert
            Assert.Contains("not both", result.ErrorMessage);
            Assert.False(result.Success);
        }
예제 #4
0
        public void ParseExclusiveOption_WithOnlyOneOption_ReturnsOneValue(TemporaryDirectoryFixture tempDirectory)
        {
            FileOption option1 = FileOption.CreateRequired("file1 option", "file1");
            FileOption option2 = FileOption.CreateRequired("file2 option", "file2");
            // arrange
            ExclusiveFileOption multiFileOption = ExclusiveFileOption.CreateRequired(option1, option2);
            var file1 = tempDirectory.CreateFile("file1");

            string[] args =
            {
                "--file1", file1.ToString()
            };

            // act
            var result = multiFileOption.Parse(args);

            // assert
            Assert.Equal("", result.ErrorMessage);
            Assert.True(result.Success);
            Assert.Equal(file1, result.Result.Result);
            Assert.Equal(option1, result.Result.MatchedOption);
        }