public virtual void LoadAndInitializeTargets(string targetsFilePath)
{
if (TargetImporter == null)
{
TargetImporter = new BasicIqTargetImporter(targetsFilePath);
}
IqLogger.Log.Info("Target Loading Started...");
Targets = TargetImporter.Import();
foreach (var iqTarget in Targets)
{
iqTarget.ChargeState = 0; //parent has a 0 charge state
if (Parameters.TargetType == Globals.TargetType.LcmsFeature)
{
iqTarget.ElutionTimeTheor = Run.NetAlignmentInfo.GetNETValueForScan(iqTarget.ScanLC);
}
}
_targetUtilities.CreateChildTargets(Targets, Parameters.MinMzForDefiningChargeStateTargets,
Parameters.MaxMzForDefiningChargeStateTargets, Parameters.MaxNumberOfChargeStateTargetsToCreate, IqTargetsAreCysteineModified);
IqLogger.Log.Info("Targets Loaded Successfully. Total targets loaded= " + Targets.Count);
}
public override void LoadAndInitializeTargets(string targetsFilePath)
{
if (TargetImporter == null)
{
TargetImporter = new MSAlignIqTargetImporter(targetsFilePath);
}
Targets = TargetImporter.Import();
foreach (TopDownIqTarget target in Targets)
{
setParentNetFromChildren(target);
_targetUtilities.UpdateTargetMissingInfo(target);
target.RefineChildTargets();
target.SetChildrenFromParent();
}
}
