public bool OpenSkyFile(string skylineFile)
{
try
{
var progressMonitor = new CommandProgressMonitor(_out, new ProgressStatus(string.Empty));
using (var stream = new StreamReaderWithProgress(skylineFile, progressMonitor))
{
XmlSerializer xmlSerializer = new XmlSerializer(typeof(SrmDocument));
_out.WriteLine(Resources.CommandLine_OpenSkyFile_Opening_file___);
_doc = ConnectDocument((SrmDocument)xmlSerializer.Deserialize(stream), skylineFile);
if (_doc == null)
return false;
_out.WriteLine(Resources.CommandLine_OpenSkyFile_File__0__opened_, Path.GetFileName(skylineFile));
}
}
catch (FileNotFoundException)
{
_out.WriteLine(Resources.CommandLine_OpenSkyFile_Error__The_Skyline_file__0__does_not_exist_, skylineFile);
return false;
}
catch (Exception x)
{
_out.WriteLine(Resources.CommandLine_OpenSkyFile_Error__There_was_an_error_opening_the_file__0_, skylineFile);
_out.WriteLine(XmlUtil.GetInvalidDataMessage(skylineFile, x));
return false;
}
_skylineFile = skylineFile;
return true;
}
public bool OpenFile(string path, FormEx parentWindow = null)
{
// Remove any extraneous temporary chromatogram spill files.
var spillDirectory = Path.Combine(Path.GetDirectoryName(path) ?? "", "xic"); // Not L10N
if (Directory.Exists(spillDirectory))
DirectoryEx.SafeDelete(spillDirectory);
Exception exception = null;
SrmDocument document = null;
try
{
using (var longWaitDlg = new LongWaitDlg(this)
{
Text = Resources.SkylineWindow_OpenFile_Loading___,
Message = Path.GetFileName(path),
ProgressValue = 0
})
{
longWaitDlg.PerformWork(parentWindow ?? this, 500, progressMonitor =>
{
using (var reader = new StreamReaderWithProgress(path, progressMonitor))
{
XmlSerializer ser = new XmlSerializer(typeof (SrmDocument));
document = (SrmDocument) ser.Deserialize(reader);
}
});
if (longWaitDlg.IsCanceled)
document = null;
}
}
catch (Exception x)
{
exception = x;
}
if (exception == null)
{
if (document == null)
return false;
try
{
document = ConnectDocument(parentWindow ?? this, document, path);
if (document == null || !CheckResults(document, path))
return false;
// Make sure settings lists contain correct values for
// this document.
document.Settings.UpdateLists(path);
}
catch (Exception x)
{
exception = x;
}
}
if (exception == null)
{
try
{
using (new SequenceTreeForm.LockDoc(_sequenceTreeForm))
{
// Switch over to the opened document
SwitchDocument(document, path);
}
// Locking the sequenceTree can throw off the node count status
UpdateNodeCountStatus();
}
catch (Exception x)
{
exception = x;
}
}
if (exception != null)
{
new MessageBoxHelper(parentWindow ?? this).ShowXmlParsingError(
string.Format(Resources.SkylineWindow_OpenFile_Failure_opening__0__, path), path, exception);
return false;
}
if (SequenceTree != null && SequenceTree.Nodes.Count > 0 && !SequenceTree.RestoredFromPersistentString)
SequenceTree.SelectedNode = SequenceTree.Nodes[0];
return true;
}
