public override void Compute()
{
List <string> map = (List <string>)Workspace.Load("DocumentMap");
TLSimilarityMatrix sims = Similarities.Import(_config.Directory.Absolute, map);
Workspace.Store("Similarities", sims);
}
public override void Compute()
{
int CurrentDataset = (int)Workspace.Load("CurrentDataset") - 1;
List <ICSM11DataSet> datasets = (List <ICSM11DataSet>)Workspace.Load("ListOfDatasets");
Workspace.Store("RTM", Similarities.Import(datasets[CurrentDataset].PrecomputedRTMSimilarities));
}
public static void Run(ref Info info)
{
TLSimilarityMatrix vsm = Similarities.Import(info.ResultsDirectory + @"\CSMRTools\RoccoResults\EasyClinic UC-CC.VSM.sims");
TLSimilarityMatrix oracle = Oracle.Import(info.ResultsDirectory + @"\CSMRTools\RoccoResults\EasyClinic UC-CC.oracle");
TLSimilarityMatrix usage = Oracle.Import(info.ResultsDirectory + @"\CSMRTools\RoccoResults\EasyClinic UC-CC.relationships");
TLSimilarityMatrix udcsti = UDCSTI.Compute(vsm, usage, oracle);
Similarities.Export(udcsti, info.ResultsDirectory + @"\CSMRTools\RoccoResults\EasyClinic UC-CC.VSM_UDCSTI.MYsims");
DataSetPairsCollection metrics = OverallMetricsComputation.ComputeAll(udcsti, oracle);
TextWriter dataFile = File.CreateText(info.ResultsDirectory + @"\CSMRTools\RoccoResults\EasyClinic UC-CC.VSM_UDCSTI.MYsims.metrics");
for (int i = 0, j = 10; i < metrics.Count; i++, j += 10)
{
dataFile.WriteLine("{0} {1}", j, metrics[i].PrecisionData[0].Value);
}
dataFile.Flush();
dataFile.Close();
}
public void ComputeLSA()
{
TLArtifactsCollection source = TermDocumentMatrix.Load(@"../../Data/LSA/source.txt").ToTLArtifactsCollection();
TLArtifactsCollection target = TermDocumentMatrix.Load(@"../../Data/LSA/target.txt").ToTLArtifactsCollection();
REngine engine = new REngine(Settings.Default.RScriptEXE);
TLSimilarityMatrix matrix = (TLSimilarityMatrix)engine.Execute(new LSAScript(source, target, new LSAConfig {
Dimensions = 3
}));
TLSimilarityMatrix correct = Similarities.Import(@"../../Data/LSA/correct.txt");
foreach (TLSingleLink link in matrix.AllLinks)
{
Assert.AreEqual(correct.GetScoreForLink(link.SourceArtifactId, link.TargetArtifactId),
link.Score,
Settings.Default.DoublePrecision
);
}
}
private static void WriteSims(ref Info info, CSMR13DataSet dataset, TLSimilarityMatrix oracle, string model)
{
TextWriter Output = File.CreateText(info.OutputDirectory + @"\CheckLinkOrder\" + SharedUtils.CleanFileName(dataset.Name) + "." + model + ".txt");
TLSimilarityMatrix sims = Similarities.Import(info.ResultsDirectory.FullName + @"\" + SharedUtils.CleanFileName(dataset.Name) + @"\sims\" + model + ".sims");
TLLinksList simList = sims.AllLinks;
simList.Sort();
int pos = 1;
foreach (TLSingleLink link in simList)
{
if (oracle.IsLinkAboveThreshold(link.SourceArtifactId, link.TargetArtifactId))
{
Output.WriteLine("[{0}]\t{1}\t{2}\t{3}", pos, link.SourceArtifactId, link.TargetArtifactId, link.Score);
}
pos++;
}
Output.Flush();
Output.Close();
}
public void ComputeTest()
{
string data = @"../../Data/SimpleCorpus.";
TLArtifactsCollection source = Artifacts.Import(data + "input.source.txt");
TLArtifactsCollection target = Artifacts.Import(data + "input.target.txt");
TLSimilarityMatrix testsims = VSM.Compute(source, target);
TLSimilarityMatrix realsims = Similarities.Import(data + "output.VSM.txt");
Assert.AreEqual(testsims.Count, realsims.Count);
TLLinksList testlinks = testsims.AllLinks;
TLLinksList reallinks = realsims.AllLinks;
testlinks.Sort();
reallinks.Sort();
for (int i = 0; i < reallinks.Count; i++)
{
Assert.AreEqual(testlinks[i].SourceArtifactId, reallinks[i].SourceArtifactId);
Assert.AreEqual(testlinks[i].TargetArtifactId, reallinks[i].TargetArtifactId);
Assert.AreEqual(testlinks[i].Score, reallinks[i].Score, 0.000000001);
}
}
public void BooleanQueriesAndTFIDFCorpusTest()
{
string inputData = Settings.Default.SimpleCorpusDir;
string outputData = Path.Combine(inputData, "VSM");
TLArtifactsCollection source = Artifacts.ImportFile(Path.Combine(inputData, "source.txt"));
TLArtifactsCollection target = Artifacts.ImportFile(Path.Combine(inputData, "target.txt"));
TLSimilarityMatrix testsims = VSM.Compute(source, target, VSMWeightEnum.BooleanQueriesAndTFIDFCorpus);
TLSimilarityMatrix realsims = Similarities.Import(Path.Combine(outputData, "output.txt"));
Assert.AreEqual(testsims.Count, realsims.Count);
TLLinksList testlinks = testsims.AllLinks;
TLLinksList reallinks = realsims.AllLinks;
testlinks.Sort();
reallinks.Sort();
for (int i = 0; i < reallinks.Count; i++)
{
Assert.AreEqual(testlinks[i].SourceArtifactId, reallinks[i].SourceArtifactId);
Assert.AreEqual(testlinks[i].TargetArtifactId, reallinks[i].TargetArtifactId);
Assert.AreEqual(testlinks[i].Score, reallinks[i].Score, Settings.Default.DoublePrecision);
}
}
public override void Compute()
{
Workspace.Store("Similarities", (TLSimilarityMatrix)Similarities.Import(_config.File.Absolute));
}
/// <summary>
/// Import script results
/// </summary>
/// <param name="result">RScriptResults object</param>
/// <returns>Script results</returns>
public override object ImportResults(RScriptResult result)
{
return(Similarities.Import(_outputFile));
}