/// <summary>
/// LoadORFButton Click event handler
/// </summary>
/// <param name="sender"></param>
/// <param name="e"></param>
private void LoadORFButton_Click(object sender, RoutedEventArgs e)
{
// extensions setting
extensions = "Fasta files|*.fa;*.fas;*.fasta";
// openFileDialog method initialization
initializeOpenFileDialog(extensions);
// show openFileDialog file dialog
Nullable <bool> openResult = openFileDialog.ShowDialog();
if (openResult == true)
{
//new ORF object
ORF = new ORF();
file_seq = openFileDialog.FileName; // file handler
// sequenceParser method initialization
var tupleTemp = SeqParser.sequenceParser(file_seq);
if (tupleTemp.Item2 != 1)
{
string message = "Something went wrong. Probably you tried to use an improper file. Try again. \nFor more information about using Codon Context Ranking check the \"How to use\" page.";
ModernDialog.ShowMessage(message.ToString(), "Warning", MessageBoxButton.OK);
}
else
{
ORF.orfSeq = tupleTemp.Item1;
ORF.aminoORFseq = SeqParser.codonToAminoParser(ORF.orfSeq);
CalculateAndDisplayORF(ORF.orfSeq, ORF.aminoORFseq);
// Enabling checkboxes and button
MaximalizeRadioButton.IsEnabled = true;
MinimalizeRadioButton.IsEnabled = true;
OptimizeORFButton.IsEnabled = true;
}
}
else
{
// modern dialog initialization
string message = "Something went wrong. Probably you tried to use an improper file. Try again. \nFor more information about using Optimalizator check the \"How to use\" page.";
ModernDialog.ShowMessage(message.ToString(), "Warning", MessageBoxButton.OK);
}
}
/// <summary>
/// addORFeomeButton click event handler
/// </summary>
/// <param name="sender"></param>
/// <param name="e"></param>
private void AddORFeomeButton_Click(object sender, RoutedEventArgs e)
{
// richTextBox cleaning
ORFeomeInfoRichTextBox.Document.Blocks.Clear();
CCranker = new CCranker();
// openFileDialog method initialization
OpenFileDialogInitialize();
// show openFileDialog file dialog
Nullable <bool> openResult = openFileDialog.ShowDialog();
//if (openResult == true)
//{
string file = openFileDialog.FileName; // file handler
// sequenceParser method initialization
var tupleTemp = SeqParser.sequenceParser(file);
CCranker.orfeome = tupleTemp.Item1;
CCranker.cdsCount = tupleTemp.Item2;
// adding information to ORFeomeInfoRichTextBox
if (CCranker.cdsCount != 0)
{
ORFeomeInfoRichTextBox.AppendText(CCranker.cdsCount.ToString());
}
/*}
* else
* {
* // modern dialog initialization
* string message = "Something went wrong. Probably you tried to use an improper file. Try again. \nFor more information about using Codon Context Ranking check the \"How to use\" page.";
* ModernDialog.ShowMessage(message.ToString(), "Warning", MessageBoxButton.OK);
* }*/
}
internal RepeatParser(Parser <T> original, int min, int max, int exactly, Parser sep) : base("Repeat")
{
_inner = new SeqParser <T>(original, new RepeatConfiguration(min, max, exactly, sep));
}
