/// <summary>
/// Initializes static members of the Alphabets class.
/// </summary>
static Alphabets()
{
// get the registered alphabets.
IList <IAlphabet> registeredAlphabets = RegisteredAddIn.GetAlphabets(true);
if (null != registeredAlphabets && registeredAlphabets.Count > 0)
{
foreach (IAlphabet alphabet in registeredAlphabets)
{
if (alphabet != null && all.FirstOrDefault(IA => string.Compare(IA.Name, alphabet.Name, StringComparison.OrdinalIgnoreCase) == 0) == null)
{
all.Add(alphabet);
}
}
registeredAlphabets.Clear();
}
AmbiguousAlphabetMap = new Dictionary <IAlphabet, IAlphabet>();
MapAlphabetToAmbiguousAlphabet(DnaAlphabet.Instance, AmbiguousDnaAlphabet.Instance);
MapAlphabetToAmbiguousAlphabet(RnaAlphabet.Instance, AmbiguousRnaAlphabet.Instance);
MapAlphabetToAmbiguousAlphabet(ProteinAlphabet.Instance, AmbiguousProteinAlphabet.Instance);
MapAlphabetToAmbiguousAlphabet(AmbiguousDnaAlphabet.Instance, AmbiguousDnaAlphabet.Instance);
MapAlphabetToAmbiguousAlphabet(AmbiguousRnaAlphabet.Instance, AmbiguousRnaAlphabet.Instance);
AlphabetToBaseAlphabetMap = new Dictionary <IAlphabet, IAlphabet>();
MapAlphabetToBaseAlphabet(AmbiguousDnaAlphabet.Instance, DnaAlphabet.Instance);
MapAlphabetToBaseAlphabet(AmbiguousRnaAlphabet.Instance, RnaAlphabet.Instance);
MapAlphabetToBaseAlphabet(AmbiguousProteinAlphabet.Instance, ProteinAlphabet.Instance);
MapAlphabetToBaseAlphabet(Bio.Algorithms.MUMmer.MummerDnaAlphabet.Instance, DnaAlphabet.Instance);
MapAlphabetToBaseAlphabet(Bio.Algorithms.MUMmer.MummerRnaAlphabet.Instance, RnaAlphabet.Instance);
MapAlphabetToBaseAlphabet(Bio.Algorithms.MUMmer.MummerProteinAlphabet.Instance, ProteinAlphabet.Instance);
}
/// <summary>
/// Static constructor
/// </summary>
static Alphabets()
{
//get the registered alphabets
IList <IAlphabet> registeredAlphabets = RegisteredAddIn.GetAlphabets(true);
if (null != registeredAlphabets && registeredAlphabets.Count > 0)
{
foreach (IAlphabet alphabet in registeredAlphabets)
{
if (alphabet != null && all.FirstOrDefault(IA => string.Compare(IA.Name,
alphabet.Name, StringComparison.InvariantCultureIgnoreCase) == 0) == null)
{
all.Add(alphabet);
}
}
registeredAlphabets.Clear();
}
}
public void GetAlphabetsTest()
{
//IMPORTANT: To pass this test case, it required two folders under...\MBF\MBF.Test\bin
// 1. ...\MBF\MBF.Test\bin\Core
// 2. ...\MBF\MBF.Test\bin\Add-ins
// MBF.Test.dll needs to be copied under Add-ins folder.
IList <IAlphabet> finalValue = new List <IAlphabet>();
finalValue.Add(new NewAlphabet4TestingRegistration());
IList <IAlphabet> registeredAlphabets = RegisteredAddIn.GetAlphabets(true);
if (null != registeredAlphabets && registeredAlphabets.Count > 0)
{
foreach (IAlphabet alphabet in finalValue)
{
string name = null;
registeredAlphabets.FirstOrDefault(IA => string.Compare(name = IA.Name, alphabet.Name, StringComparison.InvariantCultureIgnoreCase) == 0);
Assert.AreSame(alphabet.Name, name);
}
}
}
public void RegisterAddinsRegisterAlphabet()
{
CreateAddinsFolder();
IList <IAlphabet> finalValue = new List <IAlphabet>();
finalValue.Add(new TestAutomationAlphabet());
// Gets the registered Alphabets
IList <IAlphabet> registeredAlphabets = RegisteredAddIn.GetAlphabets(true);
if (null != registeredAlphabets && registeredAlphabets.Count > 0)
{
foreach (IAlphabet alphabet in finalValue)
{
string name = string.Empty;
registeredAlphabets.FirstOrDefault(IA => string.Compare(name = IA.Name,
alphabet.Name, StringComparison.OrdinalIgnoreCase) == 0);
// Validates the Name
Assert.AreEqual(alphabet.Name, name);
Console.WriteLine(
string.Format((IFormatProvider)null, @"Successfully validated the Registered components for Alphabet '{0}'.",
name));
ApplicationLog.WriteLine(
string.Format((IFormatProvider)null, @"Successfully validated the Registered components for Alphabet '{0}'.",
name));
}
}
else
{
Console.WriteLine("No Components to Register.");
ApplicationLog.WriteLine("No Components to Register.");
Assert.Fail();
}
DeleteAddinsFolder();
}