private RandomVariateGenerator GetRngFromFactory(string prngText)
{
SetCurrentPrng(prngText);
var prng = RNGFactory.GetRNG();
return(prng);
}
public void TestNormal()
{
const double mu = 0.0;
const double sigma = 1.0;
int numOfFailures = 0;
const int numOfTimesToRun = 1000;
const int maxExpectedFailures = 15;
for (int i = 0; i < numOfTimesToRun; i++)
{
Console.WriteLine("Test Run Number {0}", (i + 1));
// Reset the seed for the next run
Configuration.CurrentConfiguration =
Configuration.ConfigurationFromString($"{{\"prng_seed\":{DateTime.Now.Millisecond},\"prng_index\":{i}}}");
RNGFactory.Reset();
if (IsNormalDistribution(mu, sigma) == false)
{
numOfFailures++;
Console.WriteLine("This failed {0} times.", numOfFailures);
}
}
Console.WriteLine("End of Test. This failed {0} times.", numOfFailures);
Expect(numOfFailures <= maxExpectedFailures);
}
// ReSharper restore InconsistentNaming
protected SolverBase(ModelInfo modelInfo, float duration, int repeats, int samples, IModelBuilder modelBuilder = null)
{
if (modelBuilder == null)
{
modelBuilder = new ModelBuilder();
}
this.modelInfo = modelInfo;
this.duration = duration;
SamplingParams = new SamplingParameters {
RealizationCount = repeats, SampleCount = samples
};
rng = RNGFactory.GetRNG();
_currentTime = 0.0f;
model = modelBuilder.BuildModel(modelInfo);
_time = model.Parameters.First(p => p.Name == "time");
untriggeredEvents = null;
triggeredEvents = new Queue <TriggeredEvent>();
scheduledEvents = model.ScheduledEvents.Count > 0 ? new PriorityQueue <ScheduledEvent>(model.ScheduledEvents.Count) : null;
trajectories = AllocateRecordingArrays(model.Observables, SamplingParams);
InitializePerformanceMeasurements();
stopWatch = new Stopwatch();
}
private Empirical()
{
Dimensionality = 0;
_binCount = 0;
_binEdges = null;
_probabilities = null;
_sum = 0;
_rng = RNGFactory.GetRNG();
}
public Uniform(double minimum, double maximum)
{
if (minimum > maximum)
{
throw new ArgumentException("Minimum must be <= maxmimum.", "minimum");
}
_min = minimum;
_max = maximum;
_rng = RNGFactory.GetRNG();
}
public Normal(float mean, float variance)
{
if (variance <= 0.0f)
{
throw new ArgumentException("Variance must be greater than 0.");
}
_mean = mean;
_variance = variance;
_distributionSampler = RandLibSampler.CreateRandLibSampler(RNGFactory.GetRNG());
}
public void FixedPopulationTest()
{
Configuration.CurrentConfiguration = Configuration.ConfigurationFromString("{}");
RNGFactory.Reset();
var modelInfo = compartments.emodl.EmodlLoader.LoadEMODLModel("(import (rnrs) (emodl cmslib)) (start-model \"fixedPopulation\") (species S 42) (species I 1) (observe susceptible S) (reaction infect (S) (I) (* S I)) (end-model)");
var results = compartments.Program.ExecuteModel(modelInfo, "SSA", 10.0, 1000, 4);
foreach (var vector in results.Data)
{
Assert.AreEqual(42.0, vector[0]);
}
}
public void GillespieTauTest()
{
////// /Setup the test /////////
const string configString = @"{""solver"":""Tau"",""prng_seed"":123, ""prng_index"":1,""RNG"":{""type"":""PSEUDODES""}}";
Configuration.CurrentConfiguration = Configuration.ConfigurationFromString(configString);
ModelInfo modelInfo = EmodlLoader.LoadEMODLFile("resources//testmodelTau.emodl");
const double duration = 6.28318531;
const int repeats = 42;
const int samples = 100;
var solver = new TauLeaping(modelInfo, duration, repeats, samples);
//Find the method
MethodInfo gillespieTauMethod = ReflectionUtility.GetHiddenMethod("GillespieTau", solver);
//No need to test a0 = 0, since the method is only called when a0 != 0.
// a0 != 0
ReflectionUtility.RunResetRngFactory();
ReflectionUtility.SetHiddenField("rng", solver, RNGFactory.GetRNG());
var inputArray = new object[1];
inputArray[0] = 1;
var tauOut1 = gillespieTauMethod.Invoke(solver, inputArray);
Assert.That(tauOut1, Is.EqualTo(0.21309720500123394));
ReflectionUtility.RunResetRngFactory();
ReflectionUtility.SetHiddenField("rng", solver, RNGFactory.GetRNG());
inputArray[0] = 100;
var tauOut2 = gillespieTauMethod.Invoke(solver, inputArray);
Assert.That(tauOut2, Is.EqualTo(0.0021309720500123394));
ReflectionUtility.RunResetRngFactory();
ReflectionUtility.SetHiddenField("rng", solver, RNGFactory.GetRNG());
inputArray[0] = 0.001;
var tauOut3 = gillespieTauMethod.Invoke(solver, inputArray);
Assert.That(tauOut3, Is.EqualTo(213.09720500123393));
}
private static void RunPopulationTest(string distribution, out double mean, out double stdDev)
{
Configuration.CurrentConfiguration = Configuration.ConfigurationFromString(string.Format("{{\"prng_seed\":{0},\"prng_index\":{1}}}", DateTime.Now.Millisecond, DateTime.Now.DayOfYear));
RNGFactory.Reset();
const string modelTemplate = "(import (rnrs) (emodl cmslib)) (start-model \"fixedPopulation\") (species S ({0})) (species I 1) (observe susceptible S) (reaction infect (S) (I) (* S I)) (end-model)";
var modelInfo = compartments.emodl.EmodlLoader.LoadEMODLModel(string.Format(modelTemplate, distribution));
var results = compartments.Program.ExecuteModel(modelInfo, "SSA", 10.0, 1000, 4);
double sum = results.Data.Sum(vector => vector[0]);
double sumSqr = results.Data.Sum(vector => (vector[0] * vector[0]));
double n = results.Data.Length;
mean = sum / n;
stdDev = Math.Sqrt((sumSqr - 2 * mean * sum + n * mean * mean) / n);
Console.WriteLine("initial population (mean): {0}", mean);
Console.WriteLine("initial population (std. dev.): {0}", stdDev);
}
public void RngFactoryDefaultTest()
{
Configuration.CurrentConfiguration = Configuration.ConfigurationFromString("{}");
_resetMethodinfo.Invoke(null, null);
RandomVariateGenerator rng = RNGFactory.GetRNG();
Console.WriteLine("Testing RNGFactory default value...");
if (AesCounterVariateGenerator.IsSupported)
{
Expect(rng is AesCounterVariateGenerator);
}
else
{
Expect(rng is PseudoDesVariateGenerator);
}
Console.WriteLine("{0}() PASSED", MethodBase.GetCurrentMethod().Name);
}
public void CalculateProposedTauTest1()
{
Model model;
MethodInfo calculateProposedTauMethod;
MethodInfo resetModelStateMethod;
var solver = DefaultSetupForCalculateProposedTauTests(out model, out calculateProposedTauMethod, out resetModelStateMethod);
ReflectionUtility.SetHiddenField("_regime", solver, 0);
double tauIn = 5;
object[] inputArray1 = new object[1];
inputArray1[0] = tauIn;
var tauOut1 = calculateProposedTauMethod.Invoke(solver, inputArray1);
Assert.AreEqual(0.017758100416769496, tauOut1);
ReflectionUtility.RunResetRngFactory();
ReflectionUtility.SetHiddenField("_distributionSampler", solver, RandLibSampler.CreateRandLibSampler(RNGFactory.GetRNG()));
inputArray1[0] = 0.0001;
var tauOut1B = calculateProposedTauMethod.Invoke(solver, inputArray1);
Assert.AreEqual(inputArray1[0], tauOut1B);
}
public void FireCriticalReactionTest()
{
////// /Setup the test /////////
const string configString = @"{""solver"":""TAU""}";
Configuration.CurrentConfiguration = Configuration.ConfigurationFromString(configString);
var modelInfo = EmodlLoader.LoadEMODLFile("resources//testmodelTau.emodl");
const double duration = 6.28318531;
const int repeats = 42;
const int samples = 100;
var solver = new TauLeaping(modelInfo, duration, repeats, samples);
//Find the model object
var model = ReflectionUtility.GetHiddenField <Model>("model", solver);
//Find Hidden Method to in order to initialize the population of each of the species
var resetModelStateMethod = ReflectionUtility.GetHiddenMethod("ResetModelState", solver);
resetModelStateMethod.Invoke(solver, null);
var updateAndSumRatesMethod = ReflectionUtility.GetHiddenMethod("UpdateAndSumRates", solver);
var currentRates = ReflectionUtility.GetHiddenField <double[]>("_currentRates", solver);
//Find the method
var fireCriticalReactionMethod = ReflectionUtility.GetHiddenMethod("FireCriticalReaction", solver);
//Find a0 update currentRates.
var inputArrayForUpdate = new object[2];
inputArrayForUpdate[0] = model.Reactions;
inputArrayForUpdate[1] = currentRates;
var a0 = updateAndSumRatesMethod.Invoke(solver, inputArrayForUpdate);
currentRates = ReflectionUtility.GetHiddenField <double[]>("_currentRates", solver);
//Define inputs for method Here there is one reaction
ReflectionUtility.RunResetRngFactory();
ReflectionUtility.SetHiddenField("rng", solver, RNGFactory.GetRNG());
var inputArray = new object[3];
var criticalReactions = new List <Reaction>();
criticalReactions.Add(model.Reactions[0]);
var criticalRates = new double[1];
criticalRates[0] = currentRates[0];
inputArray[0] = criticalReactions;
inputArray[1] = criticalRates;
inputArray[2] = criticalRates[0];
fireCriticalReactionMethod.Invoke(solver, inputArray);
Assert.AreEqual(6, model.Species[0].Count);
Assert.AreEqual(1, model.Species[1].Count);
//Define inputs for method Here there is for two reactions
ReflectionUtility.RunResetRngFactory();
ReflectionUtility.SetHiddenField("rng", solver, RNGFactory.GetRNG());
resetModelStateMethod.Invoke(solver, null);
inputArray = new object[3];
criticalReactions = new List <Reaction>();
criticalReactions.Add(model.Reactions[0]);
criticalReactions.Add(model.Reactions[1]);
criticalRates = new double[2];
criticalRates[0] = currentRates[0];
criticalRates[1] = currentRates[1];
inputArray[0] = criticalReactions;
inputArray[1] = criticalRates;
inputArray[2] = a0;
fireCriticalReactionMethod.Invoke(solver, inputArray);
Assert.AreEqual(6, model.Species[0].Count);
Assert.AreEqual(1, model.Species[1].Count);
ReflectionUtility.RunResetRngFactory();
ReflectionUtility.SetHiddenField("rng", solver, RNGFactory.GetRNG());
resetModelStateMethod.Invoke(solver, null);
inputArray = new object[3];
criticalReactions = new List <Reaction>();
criticalReactions.Add(model.Reactions[0]);
criticalReactions.Add(model.Reactions[1]);
criticalRates = new double[2];
criticalRates[0] = currentRates[0];
criticalRates[1] = currentRates[1];
inputArray[0] = criticalReactions;
inputArray[1] = criticalRates;
inputArray[2] = a0;
fireCriticalReactionMethod.Invoke(solver, inputArray);
Assert.AreEqual(6, model.Species[0].Count);
Assert.AreEqual(1, model.Species[1].Count);
}
public void GillespieReactionTest()
{
////// /Setup the test /////////
const string configString = @"{""solver"":""TAU""}";
Configuration.CurrentConfiguration = Configuration.ConfigurationFromString(configString);
var modelInfo = EmodlLoader.LoadEMODLFile("resources//testmodelTau.emodl");
const double duration = 6.28318531;
const int repeats = 42;
const int samples = 100;
var solver = new TauLeaping(modelInfo, duration, repeats, samples);
//Find the model object
var model = ReflectionUtility.GetHiddenField <Model>("model", solver);
//Find Hidden Method to in order to initialize the population of each of the species
var resetModelStateMethod = ReflectionUtility.GetHiddenMethod("ResetModelState", solver);
resetModelStateMethod.Invoke(solver, null);
var updateAndSumRatesMethod = ReflectionUtility.GetHiddenMethod("UpdateAndSumRates", solver);
var currentRates = ReflectionUtility.GetHiddenField <double[]>("_currentRates", solver);
//Find the method
var gillespieReactionMethod = ReflectionUtility.GetHiddenMethod("GillespieReaction", solver);
//Test for one value of a0
ReflectionUtility.RunResetRngFactory();
ReflectionUtility.SetHiddenField("rng", solver, RNGFactory.GetRNG());
var inputArray = new object[1];
inputArray[0] = 0.01;
var reactionOut = gillespieReactionMethod.Invoke(solver, inputArray);
Assert.That(reactionOut, Is.EqualTo(model.Reactions[0]));
//Test for an actual a0 from the model file.
ReflectionUtility.RunResetRngFactory();
ReflectionUtility.SetHiddenField("rng", solver, RNGFactory.GetRNG());
var inputArrayForUpdate = new object[2];
inputArrayForUpdate[0] = model.Reactions;
inputArrayForUpdate[1] = currentRates;
var a0 = updateAndSumRatesMethod.Invoke(solver, inputArrayForUpdate);
inputArray[0] = a0;
var reactionOut2 = gillespieReactionMethod.Invoke(solver, inputArray);
Assert.That(reactionOut2, Is.EqualTo(model.Reactions[0]));
//Test for a changed a0 and rate parameter
ReflectionUtility.RunResetRngFactory();
ReflectionUtility.SetHiddenField("rng", solver, RNGFactory.GetRNG());
model.Parameters[3].Value = 10.0;
currentRates = ReflectionUtility.GetHiddenField <double[]>("_currentRates", solver);
inputArrayForUpdate[1] = currentRates;
a0 = updateAndSumRatesMethod.Invoke(solver, inputArrayForUpdate);
inputArray[0] = a0;
var reactionOut3 = gillespieReactionMethod.Invoke(solver, inputArray);
Assert.That(reactionOut3, Is.EqualTo(model.Reactions[1]));
}
public void FireNonCriticalReactionsTest()
{
const string configString = @"{""solver"":""Tau"",""prng_seed"":123, ""prng_index"":1,""RNG"":{""type"":""PSEUDODES""}}";
Configuration.CurrentConfiguration = Configuration.ConfigurationFromString(configString);
ModelInfo modelInfo = EmodlLoader.LoadEMODLFile("resources\\testmodelMidPoint.emodl");
const double duration = 6.28318531;
const int repeats = 42;
const int samples = 100;
var solver = new TauLeaping(modelInfo, duration, repeats, samples);
//Inputs for the method
// Tau Step
double tau1 = 0.0;
var tau2 = (1.0 / 200.0);
//Need a list of reactions
var currentRates = new double[1];
var nonCriticalReaction = new List <Reaction>();
//Find Hidden Method to in order to initialize the population of each of the species
MethodInfo resetModelStateMethod = ReflectionUtility.GetHiddenMethod("ResetModelState", solver);
resetModelStateMethod.Invoke(solver, null);
MethodInfo updateAndSumRatesMethod = ReflectionUtility.GetHiddenMethod("UpdateAndSumRates", solver);
//Find the model object
var model = ReflectionUtility.GetHiddenField <Model>("model", solver);
currentRates[0] = model.Reactions[0].Rate;
nonCriticalReaction.Add(model.Reactions[0]);
object[] inputArray1 = new object[3];
inputArray1[0] = tau1; inputArray1[1] = nonCriticalReaction; inputArray1[2] = currentRates;
object[] inputArray2 = new object[3];
inputArray2[0] = tau2; inputArray2[1] = nonCriticalReaction; inputArray2[2] = currentRates;
//Find Hidden Method.
MethodInfo fireNonCriticalReactionsMethod = ReflectionUtility.GetHiddenMethod("FireNonCriticalReactions", solver);
// First Test if Tau = 0;
fireNonCriticalReactionsMethod.Invoke(solver, inputArray1);
Assert.AreEqual(400, model.Species[0].Value);
Assert.AreEqual(200, model.Species[1].Value);
Assert.AreEqual(900, model.Species[2].Value);
//Second Test if Tau = = 0.05. Set the RNG to a known seed number, in order to exactly know what is generated
ReflectionUtility.RunResetRngFactory();
ReflectionUtility.SetHiddenField("_distributionSampler", solver, RandLibSampler.CreateRandLibSampler(RNGFactory.GetRNG()));
fireNonCriticalReactionsMethod.Invoke(solver, inputArray2);
Assert.AreEqual(384.0, model.Species[0].Value);
Assert.AreEqual(184.0, model.Species[1].Value);
Assert.AreEqual(916.0, model.Species[2].Value);
resetModelStateMethod.Invoke(solver, null);
object[] inputArray3 = new object[2];
inputArray3[0] = model.Reactions; inputArray3[1] = currentRates;
updateAndSumRatesMethod.Invoke(solver, inputArray3);
ReflectionUtility.RunResetRngFactory();
ReflectionUtility.SetHiddenField("_distributionSampler", solver, RandLibSampler.CreateRandLibSampler(RNGFactory.GetRNG()));
fireNonCriticalReactionsMethod.Invoke(solver, inputArray2);
Assert.AreEqual(384.0, model.Species[0].Value);
Assert.AreEqual(184.0, model.Species[1].Value);
Assert.AreEqual(916.0, model.Species[2].Value);
}
public void ExecuteReactionsTest()
{
//0. Setup
const string configString = @"{""solver"":""Tau"",""prng_seed"":123, ""prng_index"":1,""RNG"":{""type"":""PSEUDODES""}}";
Configuration.CurrentConfiguration = Configuration.ConfigurationFromString(configString);
ModelInfo modelInfo = EmodlLoader.LoadEMODLFile("resources//testmodelTau.emodl");
const double duration = 6.28318531;
const int repeats = 42;
const int samples = 100;
var solver = new TauLeaping(modelInfo, duration, repeats, samples);
//Find Hidden Method to in order to initialize the population of each of the species
MethodInfo resetModelStateMethod = ReflectionUtility.GetHiddenMethod("ResetModelState", solver);
resetModelStateMethod.Invoke(solver, null);
//Find the model object
var model = ReflectionUtility.GetHiddenField <Model>("model", solver);
//Find the method
MethodInfo executeReactionsMethod = ReflectionUtility.GetHiddenMethod("ExecuteReactions", solver);
//1. ==Regime.SSA
ReflectionUtility.RunResetRngFactory();
ReflectionUtility.SetHiddenField("_distributionSampler", solver, RandLibSampler.CreateRandLibSampler(RNGFactory.GetRNG()));
ReflectionUtility.SetHiddenField("_regime", solver, 0);
ReflectionUtility.GetHiddenField <Reaction>("_ssaReaction", solver);
//a. _ssaReaction == null;
executeReactionsMethod.Invoke(solver, null);
var regime = ReflectionUtility.GetHiddenField <int>("_regime", solver);
Assert.AreEqual(0, regime);
//b. _ssaReaction != null;
ReflectionUtility.SetHiddenField("_remainingSSAsteps", solver, 1);
ReflectionUtility.SetHiddenField("_ssaReaction", solver, model.Reactions[0]);
ReflectionUtility.RunResetRngFactory();
ReflectionUtility.SetHiddenField("_distributionSampler", solver, RandLibSampler.CreateRandLibSampler(RNGFactory.GetRNG()));
executeReactionsMethod.Invoke(solver, null);
regime = ReflectionUtility.GetHiddenField <int>("_regime", solver);
Assert.AreEqual(3, regime);
Assert.AreEqual(6.0, model.Species[0].Count);
Assert.AreEqual(1.0, model.Species[1].Count);
//2. == Regime.NonCritical
ReflectionUtility.SetHiddenField("_regime", solver, 1);
ReflectionUtility.RunResetRngFactory();
resetModelStateMethod.Invoke(solver, null);
model.Species[0].Count = 100;
model.Species[1].Count = 50;
var nonCriticalReactionsList = new List <Reaction>();
nonCriticalReactionsList.Add(model.Reactions[0]);
nonCriticalReactionsList.Add(model.Reactions[1]);
var nonCriticalRates = new double[2];
nonCriticalRates[0] = model.Reactions[0].Rate;
nonCriticalRates[1] = model.Reactions[1].Rate;
ReflectionUtility.SetHiddenField("_distributionSampler", solver, RandLibSampler.CreateRandLibSampler(RNGFactory.GetRNG()));
ReflectionUtility.SetHiddenField("_leapTau", solver, 0.01);
ReflectionUtility.SetHiddenField("_nonCriticalReactions", solver, nonCriticalReactionsList);
ReflectionUtility.SetHiddenField("_noncriticalRates", solver, nonCriticalRates);
executeReactionsMethod.Invoke(solver, null);
regime = ReflectionUtility.GetHiddenField <int>("_regime", solver);
Assert.AreEqual(3, regime);
Assert.AreEqual(103, model.Species[0].Count);
Assert.AreEqual(47, model.Species[1].Count);
//3. == Regime.Critical ) no noncriticalreactions
ReflectionUtility.SetHiddenField("_regime", solver, 2);
ReflectionUtility.RunResetRngFactory();
resetModelStateMethod.Invoke(solver, null);
model.Species[0].Count = 100;
model.Species[1].Count = 50;
var criticalReactionsList = new List <Reaction>();
criticalReactionsList.Add(model.Reactions[0]);
criticalReactionsList.Add(model.Reactions[1]);
var criticalRates = new double[2];
criticalRates[0] = model.Reactions[0].Rate;
criticalRates[1] = model.Reactions[1].Rate;
MethodInfo updateAndSumRatesMethod = ReflectionUtility.GetHiddenMethod("UpdateAndSumRates", solver);
object[] inputArray1 = new object[2];
inputArray1[0] = criticalReactionsList; inputArray1[1] = criticalRates;
var a0Critical = updateAndSumRatesMethod.Invoke(solver, inputArray1);
ReflectionUtility.SetHiddenField("_distributionSampler", solver, RandLibSampler.CreateRandLibSampler(RNGFactory.GetRNG()));
ReflectionUtility.SetHiddenField("_a0Critical", solver, a0Critical);
ReflectionUtility.SetHiddenField("_criticalReactions", solver, criticalReactionsList);
ReflectionUtility.SetHiddenField("_criticalRates", solver, criticalRates);
ReflectionUtility.SetHiddenField("_nonCriticalReactions", solver, null);
ReflectionUtility.SetHiddenField("_noncriticalRates", solver, null);
executeReactionsMethod.Invoke(solver, null);
regime = ReflectionUtility.GetHiddenField <int>("_regime", solver);
Assert.AreEqual(3, regime);
Assert.AreEqual(101, model.Species[0].Count);
Assert.AreEqual(49, model.Species[1].Count);
//3. == Regime.Critical b) noncriticalreactions and critical reactions
ReflectionUtility.SetHiddenField("_regime", solver, 2);
ReflectionUtility.RunResetRngFactory();
resetModelStateMethod.Invoke(solver, null);
model.Species[0].Count = 100;
model.Species[1].Count = 50;
criticalReactionsList = new List <Reaction>();
nonCriticalReactionsList = new List <Reaction>();
criticalReactionsList.Add(model.Reactions[0]);
nonCriticalReactionsList.Add(model.Reactions[1]);
criticalRates = new double[1];
nonCriticalRates = new double[1];
criticalRates[0] = model.Reactions[0].Rate;
nonCriticalRates[0] = model.Reactions[1].Rate;
inputArray1[0] = criticalReactionsList; inputArray1[1] = criticalRates;
a0Critical = updateAndSumRatesMethod.Invoke(solver, inputArray1);
ReflectionUtility.SetHiddenField("_distributionSampler", solver, RandLibSampler.CreateRandLibSampler(RNGFactory.GetRNG()));
ReflectionUtility.SetHiddenField("_a0Critical", solver, a0Critical);
ReflectionUtility.SetHiddenField("_leapTau", solver, 0.01);
ReflectionUtility.SetHiddenField("_criticalReactions", solver, criticalReactionsList);
ReflectionUtility.SetHiddenField("_criticalRates", solver, criticalRates);
ReflectionUtility.SetHiddenField("_nonCriticalReactions", solver, nonCriticalReactionsList);
ReflectionUtility.SetHiddenField("_noncriticalRates", solver, nonCriticalRates);
executeReactionsMethod.Invoke(solver, null);
regime = ReflectionUtility.GetHiddenField <int>("_regime", solver);
Assert.AreEqual(3, regime);
Assert.AreEqual(100, model.Species[0].Count);
Assert.AreEqual(50, model.Species[1].Count);
//4. == Regime.AnythingElse
ReflectionUtility.SetHiddenField("_regime", solver, 4);
try
{
executeReactionsMethod.Invoke(solver, null);
Assert.Fail();
}
catch (ApplicationException ex)
{
Assert.That(ex.GetBaseException().ToString(), Is.StringContaining("Bad solver mode."));
}
}
public void CalculateProposedTauTest7()
{
Model model;
MethodInfo calculateProposedTauMethod;
MethodInfo resetModelStateMethod;
var solver = DefaultSetupForCalculateProposedTauTests(out model, out calculateProposedTauMethod, out resetModelStateMethod);
object[] inputArray1 = new object[1];
ReflectionUtility.RunResetRngFactory();
ReflectionUtility.SetHiddenField("_distributionSampler", solver, RandLibSampler.CreateRandLibSampler(RNGFactory.GetRNG()));
resetModelStateMethod.Invoke(solver, null);
ReflectionUtility.SetHiddenField("_regime", solver, 3);
model.Species[0].Count = 3;
model.Species[1].Count = 3;
inputArray1[0] = 10;
ReflectionUtility.SetHiddenField("nc", solver, 10);
var tauOut7 = calculateProposedTauMethod.Invoke(solver, inputArray1);
Assert.AreEqual(0.023677467222359326, tauOut7);
ReflectionUtility.RunResetRngFactory();
ReflectionUtility.SetHiddenField("_distributionSampler", solver, RandLibSampler.CreateRandLibSampler(RNGFactory.GetRNG()));
ReflectionUtility.SetHiddenField("_regime", solver, 3);
inputArray1[0] = 0.001;
var tauOut7B = calculateProposedTauMethod.Invoke(solver, inputArray1);
Assert.AreEqual(0.001, tauOut7B);
}
public void CalculateProposedTauTest6()
{
Model model;
MethodInfo calculateProposedTauMethod;
MethodInfo resetModelStateMethod;
var solver = DefaultSetupForCalculateProposedTauTests(out model, out calculateProposedTauMethod, out resetModelStateMethod);
object[] inputArray1 = new object[1];
ReflectionUtility.RunResetRngFactory();
ReflectionUtility.SetHiddenField("_distributionSampler", solver, RandLibSampler.CreateRandLibSampler(RNGFactory.GetRNG()));
resetModelStateMethod.Invoke(solver, null);
ReflectionUtility.SetHiddenField("_regime", solver, 3);
model.Species[0].Count = 200;
model.Species[1].Count = 2;
ReflectionUtility.SetHiddenField("epsilon", solver, 0.1);
inputArray1[0] = 10;
var tauOut6 = calculateProposedTauMethod.Invoke(solver, inputArray1);
Assert.AreEqual(0.050502512562814073, tauOut6);
ReflectionUtility.RunResetRngFactory();
ReflectionUtility.SetHiddenField("_distributionSampler", solver, RandLibSampler.CreateRandLibSampler(RNGFactory.GetRNG()));
resetModelStateMethod.Invoke(solver, null);
ReflectionUtility.SetHiddenField("_regime", solver, 3);
model.Species[0].Count = 200;
model.Species[1].Count = 2;
ReflectionUtility.SetHiddenField("epsilon", solver, 0.1);
inputArray1[0] = 10;
var tauOut6Test = calculateProposedTauMethod.Invoke(solver, inputArray1);
Assert.AreEqual(0.050502512562814073, tauOut6Test);
ReflectionUtility.RunResetRngFactory();
ReflectionUtility.SetHiddenField("_distributionSampler", solver, RandLibSampler.CreateRandLibSampler(RNGFactory.GetRNG()));
ReflectionUtility.SetHiddenField("_regime", solver, 3);
inputArray1[0] = 0.01;
var tauOut6B = calculateProposedTauMethod.Invoke(solver, inputArray1);
Assert.AreEqual(0.01, tauOut6B);
}
public void CalculateProposedTauTest4()
{
Model model;
MethodInfo calculateProposedTauMethod;
MethodInfo resetModelStateMethod;
var solver = DefaultSetupForCalculateProposedTauTests(out model, out calculateProposedTauMethod, out resetModelStateMethod);
ReflectionUtility.SetHiddenField("_regime", solver, 0);
object[] inputArray1 = new object[1];
ReflectionUtility.RunResetRngFactory();
ReflectionUtility.SetHiddenField("_distributionSampler", solver, RandLibSampler.CreateRandLibSampler(RNGFactory.GetRNG()));
//resetModelStateMethod.Invoke(solver, null);
ReflectionUtility.SetHiddenField("_regime", solver, 3);
model.Species[0].Count = 3;
model.Species[1].Count = 2;
inputArray1[0] = 10;
ReflectionUtility.SetHiddenField("nc", solver, 3);
var tauOut4 = calculateProposedTauMethod.Invoke(solver, inputArray1);
Assert.AreEqual(0.026637150625154243, tauOut4);
ReflectionUtility.RunResetRngFactory();
ReflectionUtility.SetHiddenField("_distributionSampler", solver, RandLibSampler.CreateRandLibSampler(RNGFactory.GetRNG()));
ReflectionUtility.SetHiddenField("_regime", solver, 3);
inputArray1[0] = 0.001;
var tauOut4B = calculateProposedTauMethod.Invoke(solver, inputArray1);
Assert.AreEqual(0.001, tauOut4B);
ReflectionUtility.RunResetRngFactory();
ReflectionUtility.SetHiddenField("_distributionSampler", solver, RandLibSampler.CreateRandLibSampler(RNGFactory.GetRNG()));
ReflectionUtility.SetHiddenField("_regime", solver, 3);
inputArray1[0] = 6.29010763;
var tauOut4C = calculateProposedTauMethod.Invoke(solver, inputArray1);
Assert.AreEqual(0.13335417718069428, tauOut4C);
}