public TSAnalyze ()
{
InitializeComponent ();
// There are several options to initialize thengine, but by default the following suffice:
REngine engine = REngine.GetInstance();
//init the R engine
REngine.SetEnvironmentVariables ();
engine = REngine.GetInstance ();
engine.Initialize ();
//prepare data
List<int> size = new List<int>() { 29, 33, 51, 110, 357, 45, 338, 543, 132, 70, 103, 301, 146, 10, 56, 243, 238 };
List<int> population = new List<int>() { 3162, 11142, 3834, 7305, 81890, 1339, 5414, 65697, 11280, 4589, 320, 60918, 480, 1806, 4267, 63228, 21327 };
var docPath = Directory.GetCurrentDirectory();
//var myDir = $@"{docPath}\output";
var myDir = bingPathToAppDir ("output");
Directory.CreateDirectory (myDir);
Console.WriteLine (Directory.Exists (myDir));
Console.WriteLine (myDir);
Console.WriteLine (bingPathToAppDir ("output"));
Console.WriteLine ("my image location {0}", myDir);
fileName = myDir + "\\myplot.png";
//calculate
IntegerVector sizeVector = engine.CreateIntegerVector(size);
engine.SetSymbol ("size", sizeVector);
IntegerVector populationVector = engine.CreateIntegerVector(population);
engine.SetSymbol ("population", populationVector);
CharacterVector fileNameVector = engine.CreateCharacterVector(new[] { fileName });
engine.SetSymbol ("fileName", fileNameVector);
engine.Evaluate ("reg <- lm(population~size)");
engine.Evaluate ("png(filename=fileName, width=6, height=6, units='in', res=100)");
engine.Evaluate ("plot(population~size)");
engine.Evaluate ("abline(reg)");
engine.Evaluate ("dev.off()");
//clean up
engine.Dispose ();
//output
Console.WriteLine ("");
Console.WriteLine ("Press any key to exit");
Console.ReadKey ();
}
public void DrawCharRTest()
{
var x = engine.CreateIntegerVector(new[] { 1, 2, 3 });
var y = engine.CreateIntegerVector(new[] { 1, 2, 3 });
engine.SetSymbol("x", x);
engine.SetSymbol("y", y);
engine.Evaluate("plot(x,y)");
}
private void SetupDotNetToRConverters()
{
SetupDotNetToRConverter(typeof(void), p => null);
SetupDotNetToRConverter(typeof(string), p => engine.CreateCharacter((string)p));
SetupDotNetToRConverter(typeof(string[]), p => engine.CreateCharacterVector((string[])p));
SetupDotNetToRConverter(typeof(List <string>), p => engine.CreateCharacterVector((IEnumerable <string>)p));
SetupDotNetToRConverter(typeof(IList <string>), p => engine.CreateCharacterVector((IEnumerable <string>)p));
SetupDotNetToRConverter(typeof(ICollection <string>), p => engine.CreateCharacterVector((IEnumerable <string>)p));
SetupDotNetToRConverter(typeof(IEnumerable <string>), p => engine.CreateCharacterVector((IEnumerable <string>)p));
SetupDotNetToRConverter(typeof(string[, ]), p => engine.CreateCharacterMatrix((string[, ])p));
SetupDotNetToRConverter(typeof(int), p => engine.CreateInteger((int)p));
SetupDotNetToRConverter(typeof(int[]), p => engine.CreateIntegerVector((int[])p));
SetupDotNetToRConverter(typeof(List <int>), p => engine.CreateIntegerVector((IEnumerable <int>)p));
SetupDotNetToRConverter(typeof(IList <int>), p => engine.CreateIntegerVector((IEnumerable <int>)p));
SetupDotNetToRConverter(typeof(ICollection <int>), p => engine.CreateIntegerVector((IEnumerable <int>)p));
SetupDotNetToRConverter(typeof(IEnumerable <int>), p => engine.CreateIntegerVector((IEnumerable <int>)p));
SetupDotNetToRConverter(typeof(int[, ]), p => engine.CreateIntegerMatrix((int[, ])p));
SetupDotNetToRConverter(typeof(bool), p => engine.CreateLogical((bool)p));
SetupDotNetToRConverter(typeof(bool[]), p => engine.CreateLogicalVector((bool[])p));
SetupDotNetToRConverter(typeof(List <bool>), p => engine.CreateLogicalVector((IEnumerable <bool>)p));
SetupDotNetToRConverter(typeof(IList <bool>), p => engine.CreateLogicalVector((IEnumerable <bool>)p));
SetupDotNetToRConverter(typeof(ICollection <bool>), p => engine.CreateLogicalVector((IEnumerable <bool>)p));
SetupDotNetToRConverter(typeof(IEnumerable <bool>), p => engine.CreateLogicalVector((IEnumerable <bool>)p));
SetupDotNetToRConverter(typeof(bool[, ]), p => engine.CreateLogicalMatrix((bool[, ])p));
SetupDotNetToRConverter(typeof(double), p => engine.CreateNumeric((double)p));
SetupDotNetToRConverter(typeof(double[]), p => engine.CreateNumericVector((double[])p));
SetupDotNetToRConverter(typeof(List <double>), p => engine.CreateNumericVector((IEnumerable <double>)p));
SetupDotNetToRConverter(typeof(IList <double>), p => engine.CreateNumericVector((IEnumerable <double>)p));
SetupDotNetToRConverter(typeof(ICollection <double>), p => engine.CreateNumericVector((IEnumerable <double>)p));
SetupDotNetToRConverter(typeof(IEnumerable <double>), p => engine.CreateNumericVector((IEnumerable <double>)p));
SetupDotNetToRConverter(typeof(double[, ]), p => engine.CreateNumericMatrix((double[, ])p));
SetupDotNetToRConverter(typeof(DateTime), p => engine.CreatePosixct((DateTime)p));
SetupDotNetToRConverter(typeof(DateTime[]), p => engine.CreatePosixctVector((DateTime[])p));
SetupDotNetToRConverter(typeof(List <DateTime>), p => engine.CreatePosixctVector((IEnumerable <DateTime>)p));
SetupDotNetToRConverter(typeof(IList <DateTime>), p => engine.CreatePosixctVector((IEnumerable <DateTime>)p));
SetupDotNetToRConverter(typeof(ICollection <DateTime>), p => engine.CreatePosixctVector((IEnumerable <DateTime>)p));
SetupDotNetToRConverter(typeof(IEnumerable <DateTime>), p => engine.CreatePosixctVector((IEnumerable <DateTime>)p));
SetupDotNetToRConverter(typeof(DateTime[, ]), p => engine.CreatePosixctMatrix((DateTime[, ])p));
SetupDotNetToRConverter(typeof(TimeSpan), p => engine.CreateDiffTime((TimeSpan)p));
SetupDotNetToRConverter(typeof(TimeSpan[]), p => engine.CreateDiffTimeVector((TimeSpan[])p));
SetupDotNetToRConverter(typeof(List <TimeSpan>), p => engine.CreateDiffTimeVector((IEnumerable <TimeSpan>)p));
SetupDotNetToRConverter(typeof(IList <TimeSpan>), p => engine.CreateDiffTimeVector((IEnumerable <TimeSpan>)p));
SetupDotNetToRConverter(typeof(ICollection <TimeSpan>), p => engine.CreateDiffTimeVector((IEnumerable <TimeSpan>)p));
SetupDotNetToRConverter(typeof(IEnumerable <TimeSpan>), p => engine.CreateDiffTimeVector((IEnumerable <TimeSpan>)p));
SetupDotNetToRConverter(typeof(TimeSpan[, ]), p => engine.CreateDiffTimeMatrix((TimeSpan[, ])p));
}
/// <summary>
/// (Private) Applies the inputs of an RScript object.
/// </summary>
private void ApplyInputs(RScript script, object[] inputs)
{
UiControls.Assert(inputs.Length == script.InputNames.Length, "Number of inputs requested by script must match number of inputs provided.");
for (int i = 0; i < inputs.Length; i++)
{
string name = script.InputNames[i];
if (name != null)
{
var obj = inputs[i];
SymbolicExpression sym;
if (obj is double[, ])
{
sym = _r.CreateNumericMatrix((double[, ])obj);
}
else if (obj is IReadOnlyList <double> )
{
sym = _r.CreateNumericVector((IReadOnlyList <double>)obj);
}
else if (obj is IEnumerable <double> )
{
sym = _r.CreateNumericVector((IEnumerable <double>)obj);
}
else if (obj is int[])
{
sym = _r.CreateIntegerVector((int[])obj);
}
else if (obj is int[, ])
{
sym = _r.CreateIntegerMatrix((int[, ])obj);
}
else if (obj is IEnumerable <int> )
{
sym = _r.CreateIntegerVector((IEnumerable <int>)obj);
}
else
{
throw new InvalidOperationException("Cannot create R object for obj: " + obj);
}
_r.SetSymbol(name, sym);
}
}
}
static void Main(string[] args)
{
// Sample code used for updating the documentation at the codeplex web site.
using (REngine engine = REngine.GetInstance())
{
var e = engine.Evaluate("x <- 3");
// You can now access x defined in the R environment.
NumericVector x = engine.GetSymbol("x").AsNumeric();
engine.Evaluate("y <- 1:10");
NumericVector y = engine.GetSymbol("y").AsNumeric();
// Invoking functions; Previously you may have needed custom function definitions
var myFunc = engine.Evaluate("function(x, y) { expand.grid(x=x, y=y) }").AsFunction();
var v1 = engine.CreateIntegerVector(new[] { 1, 2, 3 });
var v2 = engine.CreateCharacterVector(new[] { "a", "b", "c" });
var df = myFunc.Invoke(new SymbolicExpression[] { v1, v2 }).AsDataFrame();
// As of R.NET 1.6, more function call syntaxes are supported.
var expandGrid = engine.Evaluate("expand.grid").AsFunction();
var d = new Dictionary <string, SymbolicExpression>();
d["x"] = v1;
d["y"] = v2;
df = expandGrid.Invoke(d).AsDataFrame();
// querying data frames
engine.SetSymbol("cases", df);
// As of R.NET 1.6, factor to character expressions work consistently with R
var letterCases = engine.Evaluate("cases[,'y']").AsCharacter().ToArray();
// "a","a","a","b","b","b", etc. Same as as.character(cases[,'y']) in R
// This used to return "1", "1", "1", "2", "2", etc. with R.NET 1.5.5
// Equivalent:
letterCases = df[1].AsCharacter().ToArray();
letterCases = df["y"].AsCharacter().ToArray();
// Accessing items by two dimensional indexing
string s = (string)df[1, 1]; // "a"
s = (string)df[3, 1]; // "a"
s = (string)df[3, "y"]; // "b"
// s = (string)df["4", "y"]; // fails because there are no row names
df[3, "y"] = "a";
s = (string)df[3, "y"]; // "a"
df[3, "y"] = "d";
s = (string)df[3, "y"]; // null, because we have an <NA> string in R
// invoking a whole script
// engine.Evaluate("source('c:/src/path/to/myscript.r')");
// TODO
// Date-time objects
}
}
public static void Start(REngine engine)
{
Console.WriteLine("\n\nExporting Objects\n\n");
string RCodeString = string.Empty;
//R character vector -- R.NET RDotNet.RDotNet.CharacterVector
Console.WriteLine("\nR character vector\n");
string[] myStringArray = new string[] { "PIDataLink", "PIProcessBook", "PIWebParts" };
CharacterVector myCharacterVector = engine.CreateCharacterVector(myStringArray.AsEnumerable());
engine.SetSymbol("mycharvector", myCharacterVector);
engine.Evaluate("print(mycharvector)");
//R integer vector -- R.NET RDotNet.NumericVector
Console.WriteLine("\nR int vector\n");
int[] myIntegerArray = new int[] { 4, 6, 10, 140, 54, 25 };
IntegerVector myIntegerVector = engine.CreateIntegerVector(myIntegerArray);
engine.SetSymbol("myintvector", myIntegerVector);
engine.Evaluate("print(myintvector)");
//R real vector -- R.NET RDotNet.NumericVector
Console.WriteLine("\nR real vector\n");
NumericVector myNumericVector = engine.CreateNumericVector(new double[] { 30.02, 29.99, 30.11, 29.97, 30.01, 29.99 });
engine.SetSymbol("mynumvector", myNumericVector);
engine.Evaluate("print(mynumvector)");
//R complex vector -- R.NET RDotNet.ComplexVector
Console.WriteLine("\nR complex vector\n");
Complex[] myComplexArray = new Complex[] { Complex.FromPolarCoordinates(10, 0.524), new Complex(12, 6), new Complex(14, 3), (Complex)12.3m, Complex.One + Complex.One };
ComplexVector myComplexVector = engine.CreateComplexVector(myComplexArray);
engine.SetSymbol("mycomplexvector", myComplexVector);
engine.Evaluate("print(mycomplexvector)");
//R raw vector -- R.NET RDotNet.RawVector
Console.WriteLine("\nR raw vector\n");
byte[] myByteArray = System.Text.Encoding.ASCII.GetBytes("u03a0");
RawVector myRawVector = engine.CreateRawVector(myByteArray);
engine.SetSymbol("myrawvector", myRawVector);
engine.Evaluate("print(myrawvector)");
//R logical vector -- R.NET RDotNet.LogicalVector
Console.WriteLine("\nR logical vector\n");
LogicalVector myLogicalVector = engine.CreateLogicalVector(new Boolean[] { true, false, false, false, true });
engine.SetSymbol("mylogicalvector", myLogicalVector);
engine.Evaluate("print(mylogicalvector)");
}
private void cboVariable1_SelectedIndexChanged(object sender, EventArgs e)
{
string strTargetLayerName = cboTargetLayer.Text;
m_strVar1Name = cboVariable1.Text;
int intTargetIndex = m_pSnippet.GetIndexNumberFromLayerName(m_pActiveView, strTargetLayerName);
m_intNFeatureCount = 0;
ILayer pTargetLayer = m_pForm.axMapControl1.get_Layer(intTargetIndex);
m_pTargetFLayer = (IFeatureLayer)pTargetLayer;
//Extract geometry from selected feature
IFeatureCursor pFCursor = null;
pFCursor = m_pTargetFLayer.Search(null, true);
m_intNFeatureCount = m_pTargetFLayer.FeatureClass.FeatureCount(null);
IFeature pFeature = pFCursor.NextFeature();
//Source and Group Field Index
int intVar1Idx = m_pTargetFLayer.FeatureClass.Fields.FindField(m_strVar1Name);
int intFIDIdx = m_pTargetFLayer.FeatureClass.FindField(m_pTargetFLayer.FeatureClass.OIDFieldName);
m_adblVar1 = new double[m_intNFeatureCount];
m_arrFID = new int[m_intNFeatureCount];
//Feature Value to Array
int i = 0;
while (pFeature != null)
{
m_adblVar1[i] = Convert.ToDouble(pFeature.get_Value(intVar1Idx));
m_arrFID[i] = Convert.ToInt32(pFeature.get_Value(intFIDIdx));
i++;
pFeature = pFCursor.NextFeature();
}
//Draw Boxplot at the Form
//Array to R vector.
NumericVector vecVar1 = m_pEngine.CreateNumericVector(m_adblVar1);
m_pEngine.SetSymbol(m_strVar1Name, vecVar1);
IntegerVector vecFID = m_pEngine.CreateIntegerVector(m_arrFID);
m_pEngine.SetSymbol("FID", vecFID);
}
private static void github_issue_90()
{
string rHome = @"c:\Program Files\R\R-3.4.4\";
string rPath = @"C:\Program Files\R\R-3.4.4\bin\x64";
REngine.SetEnvironmentVariables(rPath: rPath, rHome: rHome);
//p.RHome = @"c:\Program Files\Microsoft\R Open\R-3.4.3\";
REngine engine = REngine.GetInstance();
engine.Evaluate("library(dplyr)");
engine.Evaluate("library(keras)");
engine.Evaluate("model <- keras_model_sequential() %>% layer_dense(units = 1000, input_shape = c(1000)) %>% compile(loss = 'mse',optimizer = 'adam')");
int counter = 0;
while (true)
{
Console.WriteLine(counter++);
IntegerVector vec = engine.CreateIntegerVector(1000);
vec.SetVector(new int[1000]);
engine.SetSymbol("vec1000", vec);
var execution = "predict(model, t(vec1000))";
using (var output = engine.Evaluate(execution))
{
using (var a = output.AsList())
{
for (int i = 0; i < 1000; i++)
{
using (var b = a[i].AsNumeric())
{
}
}
}
};
}
}
private void button3_Click(object sender, EventArgs e)
{
int FeatureNum = app.FeaName.GetLength(0);
int SampleNum = app.SamName.GetLength(0);
REngine.SetEnvironmentVariables();
REngine PCA = REngine.GetInstance();
PCA.Initialize();
NumericMatrix Freq = PCA.CreateNumericMatrix(app.CountMatrix);
PCA.SetSymbol("Freq", Freq);
CharacterVector SampleName = PCA.CreateCharacterVector(app.SamName);
CharacterVector FeatureName = PCA.CreateCharacterVector(app.FeaName);
PCA.SetSymbol("FeatureName", FeatureName);
PCA.SetSymbol("SampleName", SampleName);
PCA.Evaluate("library(stats)");
PCA.Evaluate("pr <- prcomp(t(Freq),cor = TRUE)");
PCA.Evaluate("score <- predict(pr)");
double[,] Count = PCA.GetSymbol("score").AsNumericMatrix().ToArray();
app.Score = new double[SampleNum, 2];
for (int i = 0; i < SampleNum; i++)
{
app.Score[i, 0] = Count[i, 0];
app.Score[i, 1] = Count[i, 1];
}
if (this.radioButton1.Checked)
{
PCA.Evaluate("windows()");
PCA.Evaluate("plot(score[,1:2],main=\"PCA\", type=\"p\")");
}
else
{
if ((app.cluster == null) || (app.cluster.Length != SampleNum))
{
MessageBox.Show("Sample number in input data is not equal to that in cluster information!!", "Warning!!!", MessageBoxButtons.OK);
}
else
{
IntegerVector cluster = PCA.CreateIntegerVector(app.cluster);
PCA.SetSymbol("cluster", cluster);
PCA.Evaluate("clusterNum <- max(cluster)");
PCA.Evaluate("clustermin <- min(cluster)");
app.clusterNum = (int)PCA.GetSymbol("clusterNum").AsNumeric().First();
int clustermin = (int)PCA.GetSymbol("clustermin").AsNumeric().First();
if (app.clusterNum > 10)
{
MessageBox.Show("Too many clusters!!", "WARNING!");
}
else if (clustermin < 0)
{
MessageBox.Show("Illegal cluster number!!!", "WARNING!");
}
else
{
PCA_whole_Output plot = new PCA_whole_Output();
plot.MdiParent = this.MdiParent;
plot.Show();
}
}
}
this.Close();
}
static void Main(string[] args)
{
REngine.SetEnvironmentVariables();
REngine RBlock = REngine.GetInstance();
DirectoryInfo di = new DirectoryInfo("C:\\Users\\" + Environment.UserName + "\\Documents\\File Attachments\\");
string searchPattern = "*";
// Set some bases. These need to be tested for each sample.
int avgRowCount = 100;
int avgColCount = 20;
int fileCount = 0;
// Get our files, Create a library to hold everything
Library.ListofFiles = Library.makeList(di, searchPattern);
// Look Through Each File
foreach (var a in Library.ListofFiles)
{
Console.WriteLine(a.FileName);
string fileLocation = di + a.FileName;
// Open The File, Set the Page
EL.singleExcel thisExcel = new EL.singleExcel().createExcel(fileLocation);
EL.singleExcel.ExcelWorkSheetChange(thisExcel, 1);
// Get Basic Vars
new EDA.excelBasics().basicVars(a, thisExcel);
// Run Series of Operations to Get More Exact Bounds
EDA.lookTriggers LT = new EDA.lookTriggers();
LT.runTriggers(fileCount, a, avgRowCount, avgColCount, out avgRowCount, out avgColCount);
Library.colCounts.Add(a.colCount);
Library.rowCounts.Add(a.rowCount);
// In the event that no rows are found, the file is not counted
if (a.rowCount != 0)
{
fileCount++;
}
EL.singleExcel.CloseSheet(thisExcel);
//Console.ReadLine();
Console.WriteLine("\n");
}
// Run some R analysis
IntegerVector rowR = RBlock.CreateIntegerVector(Library.rowCounts);
IntegerVector colR = RBlock.CreateIntegerVector(Library.colCounts);
RBlock.SetSymbol("rowR", rowR);
RBlock.SetSymbol("colR", colR);
int[] thisTemp;
RBlock.Evaluate("temp <- table(as.vector(rowR))");
thisTemp = RBlock.Evaluate("names(temp)[temp == max(temp)]").AsInteger().ToArray();
Library.groupStats.modeRow = thisTemp[0];
RBlock.Evaluate("temp <- table(as.vector(colR))");
thisTemp = RBlock.Evaluate("names(temp)[temp == max(temp)]").AsInteger().ToArray();
Library.groupStats.modeCol = thisTemp[0];
thisTemp = RBlock.Evaluate("mean(rowR)").AsInteger().ToArray();
Library.groupStats.meanRow = thisTemp[0];
thisTemp = RBlock.Evaluate("mean(colR)").AsInteger().ToArray();
Library.groupStats.meanCol = thisTemp[0];
thisTemp = RBlock.Evaluate("median(rowR)").AsInteger().ToArray();
Library.groupStats.medianRow = thisTemp[0];
thisTemp = RBlock.Evaluate("median(colR)").AsInteger().ToArray();
Library.groupStats.medianCol = thisTemp[0];
thisTemp = RBlock.Evaluate("min(rowR)").AsInteger().ToArray();
Library.groupStats.minRow = thisTemp[0];
thisTemp = RBlock.Evaluate("min(colR)").AsInteger().ToArray();
Library.groupStats.minCol = thisTemp[0];
thisTemp = RBlock.Evaluate("max(rowR)").AsInteger().ToArray();
Library.groupStats.maxRow = thisTemp[0];
thisTemp = RBlock.Evaluate("max(colR)").AsInteger().ToArray();
Library.groupStats.maxCol = thisTemp[0];
thisTemp = RBlock.Evaluate("IQR(rowR)").AsInteger().ToArray();
Library.groupStats.iqrRow = thisTemp[0];
thisTemp = RBlock.Evaluate("IQR(colR)").AsInteger().ToArray();
Library.groupStats.iqrCol = thisTemp[0];
thisTemp = RBlock.Evaluate("quantile(rowR)").AsInteger().ToArray();
Library.groupStats.quantileRow = thisTemp[0];
thisTemp = RBlock.Evaluate("quantile(colR)").AsInteger().ToArray();
Library.groupStats.quantileCol = thisTemp[0];
RBlock.Dispose();
EL.singleExcel.outputObjectToExcel(Library.groupStats);
// Build some training data from previous information, assumptions
object[,] theWords = TSR.trainMethods.getTrainData(di, "\\testdata\\trainlist.xlsx");
List <string> words = new List <string>();
TSR.trainMethods.makeTrainList(theWords, words);
theWords = TSR.trainMethods.getTrainData(di, "\\testdata\\looselist.xlsx");
List <string> looseWords = new List <string>();
TSR.trainMethods.makeTrainList(theWords, looseWords);
Dictionary <string, int> discreteTermsDict = new Dictionary <string, int>();
Dictionary <string, int> betterTermsDict = new Dictionary <string, int>();
Dictionary <string, int> secondaryTermsDict = new Dictionary <string, int>();
// Run training scenarios
TSR.trainMethods.runTrainScan(words, looseWords, avgColCount, Library.ListofFiles, out discreteTermsDict, out betterTermsDict, out secondaryTermsDict);
TSR.trainMethods.buildTrainList(discreteTermsDict, words);
TSR.trainMethods.runTrainScan(words, looseWords, avgColCount, Library.ListofFiles, out discreteTermsDict, out betterTermsDict, out secondaryTermsDict);
TSR.trainMethods.buildTrainList(betterTermsDict, looseWords);
TSR.trainMethods.buildTrainList(secondaryTermsDict, looseWords);
// In tests, three cycles make for extremely high confidence
TSR.trainMethods.runTrainScan(words, looseWords, avgColCount, Library.ListofFiles, out discreteTermsDict, out betterTermsDict, out secondaryTermsDict);
// Terms for classifcation
EL.singleExcel.outputListToExcel(words, "strongTrainList");
EL.singleExcel.outputListToExcel(looseWords, "learnedTrainList");
}