public MatrixAligner(List <QPeptide> Peptides, List <QProtein> Proteins, int FileCount)
{
AlList = new List <Object>();
AlMatrix = new QAlInfo[FileCount, FileCount];
//этот массив иногда оказывается больше 2 гиг
PeptideRatios = new double[FileCount, FileCount][];
for (int i = 0; i < FileCount; i++)
{
for (int j = 0; j < FileCount; j++)
{
PeptideRatios[i, j] = new double[Peptides.Count];
}
}
ProteinMedians = new double[FileCount, FileCount, Proteins.Count];
ProteinSlopes = new double[FileCount, FileCount, Proteins.Count];
ProteinDeltas = new double[FileCount, FileCount, Proteins.Count];
this.Peptides = Peptides;
this.Proteins = Proteins;
this.FileCount = FileCount;
Peptides.Sort(new QPeptide.byIPIs());
Proteins.Sort(new QProtein.byIPI());
for (int i = 0; i < FileCount; i++)
{
for (int j = 0; j < FileCount; j++)
{
AlMatrix[i, j] = new QAlInfo();
AlMatrix[i, j].i = i;
AlMatrix[i, j].j = j;
AlList.Add(AlMatrix[i, j]);
}
}
}
public MatrixAligner(List<QPeptide> Peptides, List<QProtein> Proteins,int FileCount)
{
AlList = new List<Object>();
AlMatrix = new QAlInfo[FileCount, FileCount];
//этот массив иногда оказывается больше 2 гиг
PeptideRatios = new double[FileCount, FileCount][];
for ( int i = 0 ; i < FileCount ; i++){
for ( int j = 0 ; j < FileCount ; j++){
PeptideRatios[i,j] = new double[Peptides.Count];
}
}
ProteinMedians = new double[FileCount, FileCount, Proteins.Count];
ProteinSlopes = new double[FileCount, FileCount, Proteins.Count];
ProteinDeltas = new double[FileCount, FileCount, Proteins.Count];
this.Peptides = Peptides;
this.Proteins = Proteins;
this.FileCount = FileCount;
Peptides.Sort(new QPeptide.byIPIs());
Proteins.Sort(new QProtein.byIPI());
for (int i = 0 ; i < FileCount ; i++){
for (int j = 0 ; j < FileCount ; j++){
AlMatrix[i, j] = new QAlInfo();
AlMatrix[i, j].i = i;
AlMatrix[i, j].j = j;
AlList.Add(AlMatrix[i,j]);
}
}
}
