private PeptideMatchesData AnalyzeClusters(List <UMCClusterLight> clusters)
{
var peptides = new Dictionary <string, List <Peptide> >();
foreach (var cluster in clusters)
{
var clusterPeptides = ExtractPeptides(cluster.Features);
foreach (var peptide in clusterPeptides)
{
if (!peptides.ContainsKey(peptide.Sequence))
{
peptides.Add(peptide.Sequence, new List <Peptide>());
}
peptides[peptide.Sequence].Add(peptide);
}
}
// analyze now...
var matches = new PeptideMatchesData();
foreach (var sequence in peptides.Keys)
{
var map = new Dictionary <int, int>();
foreach (var peptide in peptides[sequence])
{
var parent = peptide.GetParentUmc();
if (parent != null)
{
if (parent.UmcCluster != null)
{
var id = parent.UmcCluster.Id;
if (!map.ContainsKey(id))
{
map.Add(id, 0);
}
map[id]++;
}
}
}
if (map.Count > 1)
{
matches.DifferentCluster++;
}
else
{
matches.SameCluster++;
}
}
return(matches);
}
private PeptideMatchesData AnalyzeClusters(List<UMCClusterLight> clusters)
{
var peptides = new Dictionary<string, List<Peptide>>();
foreach (var cluster in clusters)
{
var clusterPeptides = ExtractPeptides(cluster.Features);
foreach (var peptide in clusterPeptides)
{
if (!peptides.ContainsKey(peptide.Sequence))
{
peptides.Add(peptide.Sequence, new List<Peptide>());
}
peptides[peptide.Sequence].Add(peptide);
}
}
// analyze now...
var matches = new PeptideMatchesData();
foreach (var sequence in peptides.Keys)
{
var map = new Dictionary<int, int>();
foreach (var peptide in peptides[sequence])
{
var parent = peptide.GetParentUmc();
if (parent != null)
{
if (parent.UmcCluster != null)
{
var id = parent.UmcCluster.Id;
if (!map.ContainsKey(id))
{
map.Add(id, 0);
}
map[id]++;
}
}
}
if (map.Count > 1)
matches.DifferentCluster++;
else
matches.SameCluster++;
}
return matches;
}
