public LocalizedHit(PSM psm, PeptideIsoform isoform, PeptideIsoform secondIsoform, int numSDFs, int sdfs, int sdfs2, double pvalue, double ascore)
{
PSM = psm;
LocalizedIsoform = isoform;
SecondBestPeptideIsoform = secondIsoform;
NumberOfSiteDeterminingFragments = numSDFs;
BestPeptideSDFCount = sdfs;
SecondBestPeptideSDFCount = sdfs2;
PValue = pvalue;
AScore = ascore;
MatchDifference = isoform.SpectralMatch.Matches - secondIsoform.SpectralMatch.Matches;
}
public LocalizedHit(PSM psm, PeptideIsoform isoform, PeptideIsoform secondIsoform, int numSDFs, int sdfs, int sdfs2, double pvalue, double ascore)
{
PSM = psm;
LocalizedIsoform = isoform;
SecondBestPeptideIsoform = secondIsoform;
NumberOfSiteDeterminingFragments = numSDFs;
BestPeptideSDFCount = sdfs;
SecondBestPeptideSDFCount = sdfs2;
PValue = pvalue;
AScore = ascore;
MatchDifference = isoform.SpectralMatch.Matches - secondIsoform.SpectralMatch.Matches;
}
private IEnumerable<Fragment> GetSiteDeterminingFragments(PeptideIsoform pep1, PeptideIsoform pep2)
{
List<Fragment> frags1 = pep1.Fragments;
List<Fragment> frags2 = pep2.Fragments;
int count = frags1.Count;
for (int i = 0; i < count; i++)
{
var frag1 = frags1[i];
var frag2 = frags2[i];
double difference = Math.Abs(frag1.MonoisotopicMass - frag2.MonoisotopicMass);
if (difference > 0.001)
{
yield return frag1;
yield return frag2;
}
}
}
