//public void AddProteinInstance(string path, Vector3 position, Quaternion rotation)
//{
// if (!ProteinIngredientNames.Contains(path))
// {
// throw new Exception("Ingredient path do not exists");
// }
// var ingredientId = ProteinIngredientNames.IndexOf(path);
// CPUBuffers.Get.ProteinInstanceInfos.Add(new Vector4(ingredientId, (int) InstanceState.Normal, 0));
// CPUBuffers.Get.ProteinInstancePositions.Add(position);
// CPUBuffers.Get.ProteinInstanceRotations.Add(MyUtility.QuanternionToVector4(rotation));
// TotalNumProteinAtoms += CPUBuffers.Get.ProteinAtomCount[ingredientId];
//}
//*** Curve Ingredients ****//
public void AddCurveIngredient(string path, string pdbName)
{
if (SceneHierarchy.Contains(path))
{
throw new Exception("Invalid curve ingredient path: " + path);
}
if (CurveIngredientNames.Contains(path))
{
throw new Exception("Invalid curve ingredient path: " + path);
}
AddIngredientToHierarchy(path);
CurveIngredientNames.Add(path);
var numSteps = 1;
var twistAngle = 0.0f;
var segmentLength = 34.0f;
var color = new Color(1, 1, 1, 1);
if (path.Contains("DNA"))
{
numSteps = 12;
twistAngle = 34.3f;
segmentLength = 34.0f;
color = Color.yellow;
var atomSpheres = PdbLoader.LoadAtomSpheres(pdbName);
CPUBuffers.Get.CurveIngredientsAtomStart.Add(CPUBuffers.Get.CurveIngredientsAtoms.Count);
CPUBuffers.Get.CurveIngredientsAtomCount.Add(atomSpheres.Count);
CPUBuffers.Get.CurveIngredientsAtoms.AddRange(atomSpheres);
}
//else if (path.Contains("mRNA"))
else if (path.Contains("RNA"))
{
numSteps = 12;
twistAngle = 34.3f;
segmentLength = 34.0f;
color = Color.red;
var atomSpheres = PdbLoader.LoadAtomSpheres(pdbName);
CPUBuffers.Get.CurveIngredientsAtomStart.Add(CPUBuffers.Get.CurveIngredientsAtoms.Count);
CPUBuffers.Get.CurveIngredientsAtomCount.Add(atomSpheres.Count);
CPUBuffers.Get.CurveIngredientsAtoms.AddRange(atomSpheres);
}
else if (path.Contains("peptide"))
{
numSteps = 10;
twistAngle = 0;
segmentLength = 20.0f;
color = Color.magenta;
var atomSphere = new Vector4(0, 0, 0, 3);
CPUBuffers.Get.CurveIngredientsAtomStart.Add(CPUBuffers.Get.CurveIngredientsAtoms.Count);
CPUBuffers.Get.CurveIngredientsAtomCount.Add(1);
CPUBuffers.Get.CurveIngredientsAtoms.Add(atomSphere);
}
else if (path.Contains("lypoglycane"))
{
numSteps = 10;
twistAngle = 0;
segmentLength = 20;
color = Color.green;
var atomSphere = new Vector4(0, 0, 0, 8);
CPUBuffers.Get.CurveIngredientsAtomStart.Add(CPUBuffers.Get.CurveIngredientsAtoms.Count);
CPUBuffers.Get.CurveIngredientsAtomCount.Add(1);
CPUBuffers.Get.CurveIngredientsAtoms.Add(atomSphere);
}
else
{
throw new Exception("Curve ingredient unknown");
}
CPUBuffers.Get.CurveIngredientsColors.Add(color);
CPUBuffers.Get.CurveIngredientToggleFlags.Add(1);
CPUBuffers.Get.CurveIngredientsInfos.Add(new Vector4(numSteps, twistAngle, segmentLength, 0));
}
public void AddCurveIngredient(string name, string pdbName)
{
if (ProteinNames.Contains(name))
{
return;
}
int numSteps = 1;
float twistAngle = 0;
float segmentLength = 34.0f;
var color = Helper.GetRandomColor();
if (name.Contains("DNA"))
{
numSteps = 12;
twistAngle = 34.3f;
segmentLength = 34.0f;
color = Color.yellow;
var atomSpheres = PdbLoader.LoadAtomSpheres(pdbName);
CurveIngredientsAtomCount.Add(atomSpheres.Count);
CurveIngredientsAtomStart.Add(CurveIngredientsAtoms.Count);
CurveIngredientsAtoms.AddRange(atomSpheres);
}
else if (name.Contains("mRNA"))
{
numSteps = 12;
twistAngle = 34.3f;
segmentLength = 34.0f;
color = Color.red;
var atomSpheres = PdbLoader.LoadAtomSpheres(pdbName);
CurveIngredientsAtomCount.Add(atomSpheres.Count);
CurveIngredientsAtomStart.Add(CurveIngredientsAtoms.Count);
CurveIngredientsAtoms.AddRange(atomSpheres);
}
else if (name.Contains("peptide"))
{
numSteps = 10;
twistAngle = 0;
segmentLength = 20.0f;
color = Color.magenta;
var atomSphere = new Vector4(0, 0, 0, 3);
CurveIngredientsAtomCount.Add(1);
CurveIngredientsAtomStart.Add(CurveIngredientsAtoms.Count);
CurveIngredientsAtoms.Add(atomSphere);
}
else if (name.Contains("lypoglycane"))
{
numSteps = 10;
twistAngle = 0;
segmentLength = 20;
color = Color.green;
var atomSphere = new Vector4(0, 0, 0, 8);
CurveIngredientsAtomCount.Add(1);
CurveIngredientsAtomStart.Add(CurveIngredientsAtoms.Count);
CurveIngredientsAtoms.Add(atomSphere);
}
else
{
throw new Exception("Curve ingredient unknown");
}
CurveIngredientsNames.Add(name);
CurveIngredientsColors.Add(color);
CurveIngredientToggleFlags.Add(1);
CurveIngredientsInfos.Add(new Vector4(numSteps, twistAngle, segmentLength));
}
