void UpdateScores()
{
if (GameObject.FindObjectsOfType <PlayerControl>().Length > 0)
{
PlayerControl[] players = GameObject.FindObjectsOfType <PlayerControl>();
if (players.Length > 0)
{
scores = new List <PScore>();
foreach (var p in players)
{
PScore n = new PScore(p.name, p.score);
scores.Add(n);
}
scores.Sort((x, y) => y.score.CompareTo(x.score));
foreach (var v in objs)
{
Destroy(v);
}
objs = new List <GameObject>();
foreach (var v in scores)
{
GameObject g = (GameObject)Instantiate(nPrefab);
g.transform.SetParent(holder);
g.transform.localScale = Vector3.one;
bool V = CurrentView.Equals(v.name);
g.GetComponent <NameObj>().Init(v.name, v.score, V);
objs.Add(g);
}
}
}
else
{
SinglePlayerControl[] players = GameObject.FindObjectsOfType <SinglePlayerControl>();
if (players.Length > 0)
{
scores = new List <PScore>();
foreach (var p in players)
{
PScore n = new PScore(p.name, p.score);
scores.Add(n);
}
scores.Sort((x, y) => y.score.CompareTo(x.score));
foreach (var v in objs)
{
Destroy(v);
}
objs = new List <GameObject>();
foreach (var v in scores)
{
GameObject g = (GameObject)Instantiate(nPrefab);
g.transform.SetParent(holder);
g.transform.localScale = Vector3.one;
bool V = CurrentView.Equals(v.name);
g.GetComponent <NameObj>().Init(v.name, v.score, V);
objs.Add(g);
}
}
}
}
public string ToParsimonyProteins(ExperimentGroup exp, bool duplexQuant = false, bool useOnlyCompleteSets = false)
{
StringBuilder sb = new StringBuilder(512);
sb.AppendFormat("{0},{1},{2},{3:G4},{4:G4},{5:G4},{6},{7},{8},{9},", Name, Description, LongestProteinLen, SequenceCoverage, RepresentativeProtein.CalculateSequenceCoverage(Peptides.Where(pep => !pep.IsShared)), SequenceRedundacy, Count, UniquePeptides, Peptides.Count, Peptides.Count(pep => pep.IsShared));
if (exp != null)
{
int psms;
HashSet <Peptide> uniquepeps;
UniquePeptidesPerGroup.TryGetValue(exp, out uniquepeps);
PsmsPerGroup.TryGetValue(exp, out psms);
sb.Append(psms);
sb.Append(',');
if (uniquepeps != null)
{
sb.Append(uniquepeps.Count);
}
sb.Append(',');
sb.Append(uniquepeps.Count(pep => pep.IsShared));
sb.Append(',');
}
sb.Append(PScore.ToString(CultureInfo.InvariantCulture));
if (exp != null && exp.UseQuant)
{
Quantitation quant;
if (Quantitation.TryGetValue(exp.Name, out quant))
{
sb.Append(',');
sb.Append(quant.PSMs);
sb.Append(',');
sb.Append(quant.UniquePeptides.Count);
sb.Append(',');
sb.Append(quant.ToOutput(duplexQuant, exp.MeidanLog2Ratio, useOnlyCompleteSets));
}
else
{
sb.Append(",0,0");
for (int i = 0; i < exp.QuantPlex * 4; i++)
{
sb.Append(",-");
}
if (duplexQuant)
{
sb.Append(",N/A,N/A");
}
}
}
if (ProteinHoarder.AnnotationType != AnnotationType.None)
{
sb.Append(',');
sb.Append(ProteinIdsString());
sb.Append(',');
sb.Append(GeneNamesString());
}
return(sb.ToString());
}
void UpdateScores()
{
if(GameObject.FindObjectsOfType<PlayerControl>().Length > 0)
{
PlayerControl[] players = GameObject.FindObjectsOfType<PlayerControl>();
if(players.Length > 0)
{
scores = new List<PScore>();
foreach(var p in players)
{
PScore n = new PScore(p.name, p.score);
scores.Add(n);
}
scores.Sort((x, y) => y.score.CompareTo(x.score));
foreach(var v in objs)
Destroy(v);
objs = new List<GameObject>();
foreach(var v in scores)
{
GameObject g = (GameObject)Instantiate(nPrefab);
g.transform.SetParent(holder);
g.transform.localScale = Vector3.one;
bool V = CurrentView.Equals(v.name);
g.GetComponent<NameObj>().Init(v.name, v.score, V);
objs.Add(g);
}
}
}
else
{
SinglePlayerControl[] players = GameObject.FindObjectsOfType<SinglePlayerControl>();
if(players.Length > 0)
{
scores = new List<PScore>();
foreach(var p in players)
{
PScore n = new PScore(p.name, p.score);
scores.Add(n);
}
scores.Sort((x, y) => y.score.CompareTo(x.score));
foreach(var v in objs)
Destroy(v);
objs = new List<GameObject>();
foreach(var v in scores)
{
GameObject g = (GameObject)Instantiate(nPrefab);
g.transform.SetParent(holder);
g.transform.localScale = Vector3.one;
bool V = CurrentView.Equals(v.name);
g.GetComponent<NameObj>().Init(v.name, v.score, V);
objs.Add(g);
}
}
}
}
public string ToOutputLine(OutputFileType type)
{
StringBuilder sb = new StringBuilder(512);
switch (type)
{
case OutputFileType.Parsimony_Proteins:
sb.Append(Name);
sb.Append(',');
sb.Append(IsDecoy);
sb.Append(',');
sb.Append("\"" + Description + "\"");
sb.Append(',');
sb.Append(LongestProteinLen);
sb.Append(',');
sb.Append(SequenceCoverage.ToString("g4"));
sb.Append(',');
sb.Append(SequenceRedundacy.ToString("g4"));
sb.Append(',');
sb.Append(Count);
sb.Append(',');
sb.Append(Count); // Number of unique proteins... need to figure this one out at some point
sb.Append(',');
sb.Append(UniquePeptides);
sb.Append(',');
sb.Append(Peptides.Count);
sb.Append(',');
sb.AppendLine(PScore.ToString(CultureInfo.InvariantCulture));
sb.Append(',');
break;
case OutputFileType.Parsimony_Protein_Groups:
sb.Append(Name);
sb.Append(',');
sb.Append("\"" + Description + "\"");
sb.Append(',');
sb.Append(Count);
sb.Append(',');
sb.Append(Count);
sb.Append(',');
sb.Append(UniquePeptides);
sb.Append(',');
sb.Append(Peptides.Count);
sb.Append(',');
sb.Append(PScore);
sb.AppendLine();
sb.Append(GetProteinStrings());
sb.Append(GetPeptideString());
break;
}
return(sb.ToString());
}
