public static Dictionary<string, List<OverlappedChipSeqItem>> ReadItems(List<string> sourceFiles)
{
if (sourceFiles.Count <= 2)
{
throw new ArgumentException("Input at least two data files first!");
}
var firstFile = ReadInGeneItem(sourceFiles[0]);
var curResult = OverlappedChipSeqItem.Build(firstFile);
for (int i = 1; i < sourceFiles.Count; i++)
{
var curFile = ReadInGeneItem(sourceFiles[i]);
foreach (var item in curFile)
{
if (!curResult.ContainsKey(item.GeneSymbol))
{
var oi = new OverlappedChipSeqItem();
oi.Add(item);
var oil = new List<OverlappedChipSeqItem>();
oil.Add(oi);
curResult[item.GeneSymbol] = oil;
continue;
}
var curGroup = curResult[item.GeneSymbol];
OverlappedChipSeqItem.AddToList(curGroup, item);
}
}
return curResult;
}
public void AddItem(string key, ChipSeqItem item)
{
if (!_itemMap.ContainsKey(key))
{
_itemMap[key] = new OverlappedChipSeqItem();
}
_itemMap[key].Add(item);
}
public static OverlappedChipSeqComparisonItem Build(OverlappedChipSeqItem item, Dictionary<string, string> fileNameGroup)
{
var result = new OverlappedChipSeqComparisonItem();
foreach (var csi in item)
{
var key = fileNameGroup[csi.Filename];
result.AddItem(key, csi);
}
return result;
}
