public void mzidTest()
{
XmlSerializer _indexedSerializer = new XmlSerializer(typeof(mzIdentML.Generated.MzIdentMLType));
var _mzid = new mzIdentML.Generated.MzIdentMLType();
_mzid.DataCollection = new mzIdentML.Generated.DataCollectionType();
_mzid.DataCollection.AnalysisData = new mzIdentML.Generated.AnalysisDataType();
_mzid.DataCollection.AnalysisData.SpectrumIdentificationList = new mzIdentML.Generated.SpectrumIdentificationListType[1];
_mzid.DataCollection.AnalysisData.SpectrumIdentificationList[0] = new mzIdentML.Generated.SpectrumIdentificationListType();
_mzid.DataCollection.AnalysisData.SpectrumIdentificationList[0].SpectrumIdentificationResult = new mzIdentML.Generated.SpectrumIdentificationResultType[1];
_mzid.DataCollection.AnalysisData.SpectrumIdentificationList[0].SpectrumIdentificationResult[0] = new mzIdentML.Generated.SpectrumIdentificationResultType();
_mzid.DataCollection.AnalysisData.SpectrumIdentificationList[0].SpectrumIdentificationResult[0].spectrumID = "spectrum 2";
_mzid.DataCollection.AnalysisData.SpectrumIdentificationList[0].SpectrumIdentificationResult[0].SpectrumIdentificationItem = new mzIdentML.Generated.SpectrumIdentificationItemType[1];
_mzid.DataCollection.AnalysisData.SpectrumIdentificationList[0].SpectrumIdentificationResult[0].SpectrumIdentificationItem[0] = new mzIdentML.Generated.SpectrumIdentificationItemType();
_mzid.DataCollection.AnalysisData.SpectrumIdentificationList[0].SpectrumIdentificationResult[0].SpectrumIdentificationItem[0].experimentalMassToCharge = 1134.2609130203 + 0.000001 * 1134.2609130203 + 0.000001;
_mzid.DataCollection.AnalysisData.SpectrumIdentificationList[0].SpectrumIdentificationResult[0].SpectrumIdentificationItem[0].calculatedMassToCharge = 1134.26091302033;
_mzid.DataCollection.AnalysisData.SpectrumIdentificationList[0].SpectrumIdentificationResult[0].SpectrumIdentificationItem[0].calculatedMassToChargeSpecified = true;
_mzid.DataCollection.AnalysisData.SpectrumIdentificationList[0].SpectrumIdentificationResult[0].SpectrumIdentificationItem[0].chargeState = 3;
_mzid.DataCollection.AnalysisData.SpectrumIdentificationList[0].SpectrumIdentificationResult[0].SpectrumIdentificationItem[0].cvParam = new mzIdentML.Generated.CVParamType[1];
_mzid.DataCollection.AnalysisData.SpectrumIdentificationList[0].SpectrumIdentificationResult[0].SpectrumIdentificationItem[0].cvParam[0] = new mzIdentML.Generated.CVParamType();
_mzid.DataCollection.AnalysisData.SpectrumIdentificationList[0].SpectrumIdentificationResult[0].SpectrumIdentificationItem[0].cvParam[0].value = 100.ToString();
_mzid.SequenceCollection = new mzIdentML.Generated.SequenceCollectionType();
_mzid.SequenceCollection.PeptideEvidence = new mzIdentML.Generated.PeptideEvidenceType[1];
_mzid.SequenceCollection.PeptideEvidence[0] = new mzIdentML.Generated.PeptideEvidenceType();
_mzid.SequenceCollection.PeptideEvidence[0].isDecoy = false;
_mzid.SequenceCollection.Peptide = new mzIdentML.Generated.PeptideType[1];
_mzid.SequenceCollection.Peptide[0] = new mzIdentML.Generated.PeptideType();
_mzid.SequenceCollection.Peptide[0].PeptideSequence = "GPEAPPPALPAGAPPPCTAVTSDHLNSLLGNILR";
_mzid.SequenceCollection.Peptide[0].Modification = new mzIdentML.Generated.ModificationType[1];
_mzid.SequenceCollection.Peptide[0].Modification[0] = new mzIdentML.Generated.ModificationType();
_mzid.SequenceCollection.Peptide[0].Modification[0].locationSpecified = true;
_mzid.SequenceCollection.Peptide[0].Modification[0].location = 17;
_mzid.SequenceCollection.Peptide[0].Modification[0].monoisotopicMassDeltaSpecified = true;
_mzid.SequenceCollection.Peptide[0].Modification[0].monoisotopicMassDelta = 57.02146373;
_mzid.SequenceCollection.Peptide[0].Modification[0].cvParam = new mzIdentML.Generated.CVParamType[1];
_mzid.SequenceCollection.Peptide[0].Modification[0].cvParam[0] = new mzIdentML.Generated.CVParamType();
_mzid.SequenceCollection.Peptide[0].Modification[0].cvParam[0].accession = "UNIMOD:4";
_mzid.SequenceCollection.Peptide[0].Modification[0].cvParam[0].name = "Carbamidomethyl";
_mzid.SequenceCollection.Peptide[0].Modification[0].cvParam[0].cvRef = "UNIMOD";
TextWriter writer = new StreamWriter("myIdentifications.mzid");
_indexedSerializer.Serialize(writer, _mzid);
writer.Close();
var identifications = new MzidIdentifications("myIdentifications.mzid");
Assert.AreEqual(1134.26091302033, identifications.calculatedMassToCharge(0));
Assert.AreEqual(3, identifications.chargeState(0));
Assert.AreEqual(1, identifications.Count);
Assert.AreEqual(1134.26091302033 + 0.000001 * 1134.2609130203 + 0.000001, identifications.experimentalMassToCharge(0), 1e-10);
Assert.IsFalse(identifications.isDecoy(0));
Assert.AreEqual("UNIMOD:4", identifications.modificationAcession(0, 0));
Assert.AreEqual("UNIMOD", identifications.modificationDictionary(0, 0));
Assert.AreEqual(17, identifications.modificationLocation(0, 0));
Assert.AreEqual(2, identifications.ms2spectrumIndex(0));
Assert.AreEqual(1, identifications.NumModifications(0));
Assert.AreEqual("GPEAPPPALPAGAPPPCTAVTSDHLNSLLGNILR", identifications.PeptideSequenceWithoutModifications(0));
}
