public Ms1IsotopeTopKFilter(
LcMsRun run,
int minCharge = 3, int maxCharge = 30,
double ppmTolerance = 15)
{
_run = run;
_minCharge = minCharge;
_maxCharge = maxCharge;
_ppmTolerance = ppmTolerance;
_tolerance = new Tolerance(_ppmTolerance);
_comparer = new MzComparerWithPpmTolerance(ppmTolerance);
_sequenceMassBinToScanNumsMap = new Dictionary <int, IList <int> >();
//PrecomputePossibleSequenceMasses();
}
public Ms1IsotopeCorrFilter(
LcMsRun run,
int minCharge = 3, int maxCharge = 30,
double ppmTolerance = 15,
double corrThreshold = 0.5,
int maxNumDeisotopedPeaksPerIsolationWindow = 40)
{
_run = run;
_minCharge = minCharge;
_maxCharge = maxCharge;
_corrThreshold = corrThreshold;
MaxNumDeisotopedPeaksPerIsolationWindow = maxNumDeisotopedPeaksPerIsolationWindow;
_ppmTolerance = ppmTolerance;
_tolerance = new Tolerance(_ppmTolerance);
_comparer = new MzComparerWithPpmTolerance(ppmTolerance);
_sequenceMassBinToScanNumsMap = new Dictionary<int, IList<int>>();
// _topKFilter = new Ms1IsotopeTopKFilter(run, minCharge, maxCharge, ppmTolerance);
PrecomputePossibleSequenceMasses();
}
public Ms1IsotopeCorrFilter(
LcMsRun run,
int minCharge = 3, int maxCharge = 30,
double ppmTolerance = 15,
double corrThreshold = 0.5,
int maxNumDeisotopedPeaksPerIsolationWindow = 40)
{
_run = run;
_minCharge = minCharge;
_maxCharge = maxCharge;
_corrThreshold = corrThreshold;
MaxNumDeisotopedPeaksPerIsolationWindow = maxNumDeisotopedPeaksPerIsolationWindow;
_ppmTolerance = ppmTolerance;
_tolerance = new Tolerance(_ppmTolerance);
_comparer = new MzComparerWithPpmTolerance(ppmTolerance);
_sequenceMassBinToScanNumsMap = new Dictionary <int, IList <int> >();
// _topKFilter = new Ms1IsotopeTopKFilter(run, minCharge, maxCharge, ppmTolerance);
PrecomputePossibleSequenceMasses();
}
