public MotifOp(MotifCode code, TElement codon, int lower, int upper)
{
Code = code;
Value = codon;
Lower = lower;
Upper = upper;
}
private void ParseFragment(string str, List <MotifOp <TElement> > code)
{
int length = str.Length;
for (int i = 0; i < length; ++i)
{
int val = 0;
TElement element = default(TElement);
char chr = str[i];
if (OPEN_GROUP.Contains(chr))
{
char open = chr;
List <char> chars = new List <char>();
++i;
chr = str[i];
do
{
chars.Add(chr);
val += CHARSET(chr);
++i;
chr = str[i];
} while (!CLOSE_GROUP.Contains(chr));
MotifCode temp = MotifCode.NIL;
element = (TElement)Enum.ToObject(typeof(TElement), val);
temp |= chars.Count == 1 ? MotifCode.One : MotifCode.Set;
if (chr == ']')
{
temp |= MotifCode.Not;
}
if (TryGetRange(str.Substring(i + 1), out int lower, out int upper))
{
MinimumSequenceLength += lower;
temp |= MotifCode.Loop;
var op = new MotifOp <TElement>(temp, element, lower, upper);
code.Add(op);
AddDelegate(code.Count - 1, op);
i = str.IndexOf(')', i + 3);
}
else
{
++MinimumSequenceLength;
code.Add(new MotifOp <TElement>(temp, element, -1, -1));
}
}
