public MadingleyModelOutput(
string outputFilesSuffix,
Madingley.Common.Environment environment,
Madingley.Common.Configuration configuration,
MadingleyModelInitialisation outputSettings,
Madingley.Common.ModelState modelState)
{
var modelInitialisation = Converters.ConvertInitialisation(
outputSettings,
configuration,
environment);
this.ProcessTracker = new Madingley.Common.IProcessTracker[environment.FocusCells.Count()][];
for (var cellIndex = 0; cellIndex < environment.FocusCells.Count(); cellIndex++)
{
var processTracker = new GEMProcessTracker(cellIndex, this);
this.ProcessTracker[cellIndex] = new Madingley.Common.IProcessTracker[] { processTracker };
}
var globalProcessTracker = new GEMGlobalProcessTracker(this);
this.GlobalProcessTracker = new Madingley.Common.IGlobalProcessTracker[] { globalProcessTracker };
var crossCellProcessTracker = new GEMCrossCellProcessTracker(this);
this.CrossCellProcessTracker = new Madingley.Common.ICrossCellProcessTracker[] { crossCellProcessTracker };
this.model = new MadingleyModel(
modelInitialisation,
outputFilesSuffix,
configuration.Simulation,
modelState);
}
public MadingleyModelOutput(
string outputFilesSuffix,
Madingley.Common.Environment environment,
Madingley.Common.Configuration configuration,
MadingleyModelInitialisation outputSettings,
Madingley.Common.ModelState modelState)
{
var modelInitialisation = Converters.ConvertInitialisation(
outputSettings,
configuration,
environment);
this.ProcessTracker = new Madingley.Common.IProcessTracker[environment.FocusCells.Count()][];
for (var cellIndex = 0; cellIndex < environment.FocusCells.Count(); cellIndex++)
{
var processTracker = new GEMProcessTracker(cellIndex, this);
this.ProcessTracker[cellIndex] = new Madingley.Common.IProcessTracker[] { processTracker };
}
var globalProcessTracker = new GEMGlobalProcessTracker(this);
this.GlobalProcessTracker = new Madingley.Common.IGlobalProcessTracker[] { globalProcessTracker };
var crossCellProcessTracker = new GEMCrossCellProcessTracker(this);
this.CrossCellProcessTracker = new Madingley.Common.ICrossCellProcessTracker[] { crossCellProcessTracker };
this.model = new MadingleyModel(
modelInitialisation,
outputFilesSuffix,
configuration.Simulation,
modelState);
}
public static MadingleyModelInitialisation ConvertInitialisation(
MadingleyModelInitialisation outputSettings,
Madingley.Common.Configuration configuration,
Madingley.Common.Environment e)
{
var i = new MadingleyModelInitialisation();
i.GlobalModelTimeStepUnit = configuration.GlobalModelTimeStepUnit;
i.NumTimeSteps = (uint)configuration.NumTimeSteps;
i.CellSize = (float)e.CellSize;
i.BottomLatitude = (float)e.BottomLatitude;
i.TopLatitude = (float)e.TopLatitude;
i.LeftmostLongitude = (float)e.LeftmostLongitude;
i.RightmostLongitude = (float)e.RightmostLongitude;
i.PlanktonDispersalThreshold = outputSettings.PlanktonDispersalThreshold;
i.InitialisationFileStrings = new SortedList <string, string>();
i.SpecificLocations = e.SpecificLocations;
i.InitialisationFileStrings.Add("OutputDetail", outputSettings.InitialisationFileStrings["OutputDetail"]);
i.CohortFunctionalGroupDefinitions = ConvertFunctionalGroupDefinitions(configuration.CohortFunctionalGroupDefinitions);
i.StockFunctionalGroupDefinitions = ConvertFunctionalGroupDefinitions(configuration.StockFunctionalGroupDefinitions);
i.EnviroStack = e.CellEnvironment.Select(env => new SortedList <string, double[]>(env)).ToArray();
i.CellList = e.FocusCells.Select(a => new UInt32[] { (UInt32)a.Item1, (UInt32)a.Item2 }).ToList();
i.OutputPath = outputSettings.OutputPath;
i.TrackProcesses = outputSettings.TrackProcesses;
i.TrackCrossCellProcesses = outputSettings.TrackCrossCellProcesses;
i.TrackGlobalProcesses = outputSettings.TrackGlobalProcesses;
i.ProcessTrackingOutputs = outputSettings.ProcessTrackingOutputs;
i.ModelMassBins = outputSettings.ModelMassBins;
i.LiveOutputs = outputSettings.LiveOutputs;
i.TrackMarineSpecifics = outputSettings.TrackMarineSpecifics;
i.OutputMetrics = outputSettings.OutputMetrics;
i.OutputStateTimestep = outputSettings.OutputStateTimestep;
return(i);
}
public static Madingley.Common.Environment Load(
string environmentDataRoot,
string inputPath)
{
var mmi = MadingleyModelInitialisation.Load(simulationInitialisationFile, definitionsFilename, environmentDataRoot, inputPath);
MadingleyModel.Load(mmi);
return(mmi.Item1);
}
/// <summary>
/// Reads the initalization file to get information for the set of simulations to be run
/// </summary>
/// <param name="inputPath">The path to folder which contains the inputs</param>
public static Madingley.Common.Configuration Load(string inputPath)
{
var configuration = MadingleyModelInitialisation.Load(simulationInitialisationFile, definitionsFilename, inputPath);
var fileName = System.IO.Path.Combine(inputPath, "Initial Model State Setup", scenariosFilename);
configuration.FileNames.Add(fileName);
configuration.ScenarioParameters = ScenarioParameterInitialisation.Load(fileName);
return(configuration);
}
public static Madingley.Common.IOutput Create(
Madingley.Common.RunState state,
Madingley.Common.Configuration configuration,
Madingley.Common.Environment environment,
Madingley.Common.ModelState modelState)
{
// Specify the working directory
string OutputDir = "Parameters";
OutputDir += System.DateTime.Now.Year + "-"
+ System.DateTime.Now.Month + "-"
+ System.DateTime.Now.Day + "_"
+ System.DateTime.Now.Hour + "."
+ System.DateTime.Now.Minute + "."
+ System.DateTime.Now.Second + "/";
// Create the working directory if this does not already exist
System.IO.Directory.CreateDirectory(OutputDir);
foreach (var sourceFileName in configuration.FileNames)
{
var fileName = System.IO.Path.GetFileName(sourceFileName);
var destFileName = System.IO.Path.Combine(OutputDir, fileName);
System.IO.File.Copy(sourceFileName, destFileName, true);
}
foreach (var sourceFileName in environment.FileNames)
{
var fileName = System.IO.Path.GetFileName(sourceFileName);
var destFileName = System.IO.Path.Combine(OutputDir, fileName);
System.IO.File.Copy(sourceFileName, destFileName, true);
}
// Set up the suffix for the output files
var OutputFilesSuffix = "_";
// Add the scenario label to the suffix for the output files
OutputFilesSuffix += configuration.ScenarioParameters[configuration.ScenarioIndex].Label + "_";
// Add the simulation index number to the suffix
OutputFilesSuffix += configuration.Simulation.ToString();
var i = new MadingleyModelInitialisation(simulationInitialisationFile, definitionsFilename, outputsFilename, outputPath, inputPath);
i.OutputPath = OutputDir;
var output = new Madingley.Output.MadingleyModelOutput(
OutputFilesSuffix,
environment,
configuration,
i,
modelState);
if (state != null)
{
var existing = (Madingley.Output.MadingleyModelOutput)state.Output;
output.model.Copy(existing.model);
}
return output;
}
public static Madingley.Common.IOutput Create(
Madingley.Common.RunState state,
Madingley.Common.Configuration configuration,
Madingley.Common.Environment environment,
Madingley.Common.ModelState modelState)
{
// Specify the working directory
string OutputDir = "Parameters";
OutputDir += System.DateTime.Now.Year + "-"
+ System.DateTime.Now.Month + "-"
+ System.DateTime.Now.Day + "_"
+ System.DateTime.Now.Hour + "."
+ System.DateTime.Now.Minute + "."
+ System.DateTime.Now.Second + "/";
// Create the working directory if this does not already exist
System.IO.Directory.CreateDirectory(OutputDir);
foreach (var sourceFileName in configuration.FileNames)
{
var fileName = System.IO.Path.GetFileName(sourceFileName);
var destFileName = System.IO.Path.Combine(OutputDir, fileName);
System.IO.File.Copy(sourceFileName, destFileName, true);
}
foreach (var sourceFileName in environment.FileNames)
{
var fileName = System.IO.Path.GetFileName(sourceFileName);
var destFileName = System.IO.Path.Combine(OutputDir, fileName);
System.IO.File.Copy(sourceFileName, destFileName, true);
}
// Set up the suffix for the output files
var OutputFilesSuffix = "_";
// Add the scenario label to the suffix for the output files
OutputFilesSuffix += configuration.ScenarioParameters[configuration.ScenarioIndex].Label + "_";
// Add the simulation index number to the suffix
OutputFilesSuffix += configuration.Simulation.ToString();
var i = new MadingleyModelInitialisation(simulationInitialisationFile, definitionsFilename, outputsFilename, outputPath, inputPath);
i.OutputPath = OutputDir;
var output = new Madingley.Output.MadingleyModelOutput(
OutputFilesSuffix,
environment,
configuration,
i,
modelState);
if (state != null)
{
var existing = (Madingley.Output.MadingleyModelOutput)state.Output;
output.model.Copy(existing.model);
}
return(output);
}