public int Color_flag = 2; //0:N_color, 1:C_color, 2:A_color
public MS2_Denovol_Setting(MS2_Help ms2_help, Denovol_Help den_help)
{
InitializeComponent();
this.Ms2_help = ms2_help;
this.Denovol_help = den_help;
if (Display_Help.IsEqual(this.Denovol_help.b_color, this.Denovol_help.current_color))
{
Color_flag = 0;
}
else if (Display_Help.IsEqual(this.Denovol_help.y_color, this.Denovol_help.current_color))
{
Color_flag = 1;
}
else if (Display_Help.IsEqual(this.Denovol_help.default_color, this.Denovol_help.current_color))
{
Color_flag = 2;
}
Color n_color = Color.FromArgb(this.Denovol_help.b_color.A, this.Denovol_help.b_color.R,
this.Denovol_help.b_color.G, this.Denovol_help.b_color.B);
Color c_color = Color.FromArgb(this.Denovol_help.y_color.A, this.Denovol_help.y_color.R,
this.Denovol_help.y_color.G, this.Denovol_help.y_color.B);
Color a_color = Color.FromArgb(this.Denovol_help.default_color.A, this.Denovol_help.default_color.R,
this.Denovol_help.default_color.G, this.Denovol_help.default_color.B);
this.N_btn.Background = new SolidColorBrush(n_color);
this.C_btn.Background = new SolidColorBrush(c_color);
this.A_btn.Background = new SolidColorBrush(a_color);
}
public Pnovol_Result_Window(List <Pnovo_Result> Pnovo_results, MS2_Help ms2_help)
{
InitializeComponent();
this.Pnovo_results = new ObservableCollection <Pnovo_Result>(Pnovo_results);
this.pNovo_result_grid.ItemsSource = this.Pnovo_results;
this.MS2_help = ms2_help;
}
private void update(object sender, RoutedEventArgs e)
{
this.mainWindow.Dis_help.ddh.Font_SQ = this.Font.Text;
this.mainWindow.Dis_help.ddh.Font_BY = this.Font.Text;
this.mainWindow.Dis_help.ddh.Match_StrokeWidth = double.Parse(this.MatchWeight.Text);
this.mainWindow.Dis_help.ddh.NoNMatch_StrokeWidth = double.Parse(this.NoMatchWeight.Text);
this.mainWindow.Dis_help.ddh.ME_Weight = double.Parse(this.MZWeight.Text);
this.mainWindow.Dis_help.ddh.FontSize_SQ = double.Parse(this.FontSize.Text);
this.mainWindow.Dis_help.ddh.FontSize_BY = this.mainWindow.Dis_help.ddh.FontSize_SQ * 5 / 8;
this.mainWindow.Dis_help.ddh.A_Match_Color = this.A_color;
this.mainWindow.Dis_help.ddh.B_Match_Color = this.B_color;
this.mainWindow.Dis_help.ddh.C_Match_Color = this.C_color;
this.mainWindow.Dis_help.ddh.X_Match_Color = this.X_color;
this.mainWindow.Dis_help.ddh.Y_Match_Color = this.Y_color;
this.mainWindow.Dis_help.ddh.Z_Match_Color = this.Z_color;
this.mainWindow.Dis_help.ddh.M_Match_Color = this.M_color;
this.mainWindow.Dis_help.ddh.I_Match_Color = this.I_color;
this.mainWindow.Dis_help.ddh.O_Match_Color = this.O_color;
if (changed_ladder)
{
this.mainWindow.Dis_help.ddh.FontSize_SQ = 0.0;
this.mainWindow.Dis_help.ddh.FontSize_BY = 0.0;
}
MS2_Help ms2_help = new MS2_Help(this.mainWindow.Model2, this.mainWindow.Dis_help, Ladder_Help.Scale_Width, Ladder_Help.Scale_Height);
ms2_help.window_sizeChg_Or_ZoomPan();
//this.Close();
}
public Denovol_Help(PlotModel model, PSM_Help_Parent psm_help, MS2_Help ms2_help)
{
this.Model = model;
this.Psm_help = psm_help;
this.Ms2_help = ms2_help;
current_color = default_color;
}
private void Window_sizeChg(object sender, SizeChangedEventArgs e)
{
this.scale_width = this.scale_width * this.ActualWidth / this.width;
this.scale_height = this.scale_height * this.ActualHeight / this.height;
this.width = this.ActualWidth;
this.height = this.ActualHeight;
MS2_Help ms2_help = new MS2_Help(Model, dis_help, this.scale_width, this.scale_height);
ms2_help.window_sizeChg_Or_ZoomPan();
}
public Model_Window(PlotModel Model, Display_Help dis_help, double width, double height) //绘制二级匹配图
{
InitializeComponent();
this.scale_width = Ladder_Help.Scale_Width;
this.scale_height = Ladder_Help.Scale_Height;
this.width = width;
this.height = height;
this.Model = Model;
MS2_Help ms2_help = new MS2_Help(Model, dis_help, scale_width, scale_height);
this.Model.Axes[1].AxisChanged += (s, e) =>
{
ms2_help = new MS2_Help(Model, dis_help, scale_width, scale_height);
ms2_help.window_sizeChg_Or_ZoomPan();
};
this.dis_help = dis_help;
this.model.Model = this.Model;
ms2_help.window_sizeChg_Or_ZoomPan();
this.SizeChanged += Window_sizeChg;
this.Title = "PSM Figure";
}
public Model_Window_DeNovo(MainWindow mainW, PlotModel Model, Display_Help dis_help, double width, double height) //绘制二级匹配图
{
InitializeComponent();
this.scale_width = Ladder_Help.Scale_Width;
this.scale_height = Ladder_Help.Scale_Height;
this.width = width;
this.height = height;
this.Model = Model;
this.mainW = mainW;
ms2_help = new MS2_Help(Model, dis_help, scale_width, scale_height);
ms2_help.Den_help.isDenovol = true;
this.Model.Axes[1].AxisChanged += (s, e) =>
{
//ms2_help = new MS2_Help(Model, dis_help, scale_width, scale_height);
//ms2_help.isDenovol = true;
ms2_help.window_sizeChg_Or_ZoomPan();
};
this.dis_help = dis_help;
this.model.Model = this.Model;
ms2_help.window_sizeChg_Or_ZoomPan();
this.SizeChanged += Window_sizeChg;
this.Title = "De novol";
this.Original_Peaks = new List <PEAK>(dis_help.Psm_help.Spec.Peaks);
}
private void update(object sender, RoutedEventArgs e)
{
pep1_flag = this.pep1_label_cbx.SelectedIndex;
pep2_flag = this.pep2_label_cbx.SelectedIndex;
PSM_Help_2 psm_help_2 = this.mainW.Dis_help.Psm_help as PSM_Help_2;
psm_help_2.Pep1 = new Peptide(this.pep1_sq_tbx.Text);
string mods_str = get_modification_str(0);
double pep_theory_mass = 0.0;
psm_help_2.Pep1.Tag_Flag = pep1_flag + 1;
psm_help_2.Pep1.Mods = Modification.get_modSites(psm_help_2.Pep1.Sq, mods_str, psm_help_2.Pep1.Tag_Flag, ref pep_theory_mass);
psm_help_2.Pep2 = new Peptide(this.pep2_sq_tbx.Text);
mods_str = get_modification_str(1);
psm_help_2.Pep2.Tag_Flag = pep2_flag + 1;
psm_help_2.Pep2.Mods = Modification.get_modSites(psm_help_2.Pep2.Sq, mods_str, psm_help_2.Pep2.Tag_Flag, ref pep_theory_mass);
ComboBoxItem item = this.link_cbx.SelectedItem as ComboBoxItem;
psm_help_2.Xlink_mass = (double)Config_Help.link_hash[item.Content as string];
int index1 = 0, index2 = 0;
if (!isLinkPosition_right(this.link_position_tbx.Text, ref index1, ref index2))
{
MessageBox.Show("xLink position has error!");
return;
}
psm_help_2.Link_pos1 = index1;
psm_help_2.Link_pos2 = index2;
PSM_Help_2.isNormal = (bool)this.normal_ckb.IsChecked;
PSM_Help_2.isInternal = (bool)this.internal_ckb.IsChecked;
this.mainW.Dis_help.Psm_help = psm_help_2;
MS2_Help ms2_help = new MS2_Help(this.mainW.Model2, this.mainW.Dis_help, Ladder_Help.Scale_Width, Ladder_Help.Scale_Height);
mainW.new_peptide = psm_help_2.Pep1;
ms2_help.window_sizeChg_Or_ZoomPan();
}
private void update(object sender, RoutedEventArgs e)
{
if (mainW.Dis_help.Psm_help == null)
{
return;
}
//查看你选择了哪些匹配离子
for (int i = 0; i < 3; ++i)
{
for (int j = 0; j < charge_num; ++j)
{
if (Ion_Check[i * charge_num + j].IsChecked == true)
{
mainW.Dis_help.Psm_help.M_Match_Flag[i * charge_num + j] = 1;
}
else
{
mainW.Dis_help.Psm_help.M_Match_Flag[i * charge_num + j] = 0;
}
}
}
for (int i = 3; i < 21; ++i)
{
for (int j = 0; j < charge_num; ++j)
{
if (Ion_Check[i * charge_num + j].IsChecked == true)
{
if (i < 12)
{
mainW.Dis_help.Psm_help.N_Match_Flag[(i - 3) * charge_num + j] = 1;
}
else
{
mainW.Dis_help.Psm_help.C_Match_Flag[(i - 12) * charge_num + j] = 1;
}
}
else
{
if (i < 12)
{
mainW.Dis_help.Psm_help.N_Match_Flag[(i - 3) * charge_num + j] = 0;
}
else
{
mainW.Dis_help.Psm_help.C_Match_Flag[(i - 12) * charge_num + j] = 0;
}
}
}
}
int internal_index = 21;
for (int j = 0; j < charge_num; ++j)
{
if (Ion_Check[internal_index * charge_num + j].IsChecked == true)
{
mainW.Dis_help.Psm_help.I_Match_Flag[j] = 1;
}
else
{
mainW.Dis_help.Psm_help.I_Match_Flag[j] = 0;
}
}
int immon_index = 22;
for (int j = 0; j < charge_num; ++j)
{
if (Ion_Check[immon_index * charge_num + j].IsChecked == true)
{
mainW.Dis_help.Psm_help.O_Match_Flag[j] = 1;
}
else
{
mainW.Dis_help.Psm_help.O_Match_Flag[j] = 0;
}
}
//
mainW.Dis_help.Psm_help.Pep.Sq = this.seq.Text;
string ppm = this.ppm_chk.Text;
try
{
if (ppm == "ppm")
{
mainW.Dis_help.Psm_help.Ppm_mass_error = double.Parse(this.tol.Text) * 1.0e-6;
mainW.Dis_help.Psm_help.Da_mass_error = 0.0;
if (mainW.Dis_help.Psm_help.Ppm_mass_error == 0.0)
{
return;
}
}
else
{
mainW.Dis_help.Psm_help.Da_mass_error = double.Parse(this.tol.Text);
mainW.Dis_help.Psm_help.Ppm_mass_error = 0.0;
if (mainW.Dis_help.Psm_help.Da_mass_error == 0.0)
{
return;
}
}
mainW.Dis_help.Psm_help.Pep.Mods.Clear();
string mods_str = "";
if (mod_Sites[0].Mod != non_mod)
{
int index = 0;
for (int l = 0; l < Config_Help.mod_label_name.Count(); ++l)
{
if (mod_Sites[0].Mod_Flag == Config_Help.mod_label_name[l])
{
index = l;
break;
}
}
mods_str += "0," + mod_Sites[0].Mod + "#" + index + ";";
//mainW.Dis_help.Psm_help.Pep.Mods.Add(new Modification(0, (double)Config_Help.modStr_hash[mod_Sites[0].Mod], mod_Sites[0].Mod));
}
for (int k = 0; k < mainW.Dis_help.Psm_help.Pep.Sq.Length; ++k)
{
if (mod_Sites[k + 1].Mod != non_mod)
{
int index = 0;
for (int l = 0; l < Config_Help.mod_label_name.Count(); ++l)
{
if (mod_Sites[k + 1].Mod_Flag == Config_Help.mod_label_name[l])
{
index = l;
break;
}
}
mods_str += (k + 1) + "," + mod_Sites[k + 1].Mod + "#" + index + ";";
//mainW.Dis_help.Psm_help.Pep.Mods.Add(new Modification(k + 1, (double)Config_Help.modStr_hash[mod_Sites[k + 1].Mod], mod_Sites[k + 1].Mod));
}
}
if (mod_Sites[mainW.Dis_help.Psm_help.Pep.Sq.Length + 1].Mod != non_mod)
{
int index = 0;
for (int l = 0; l < Config_Help.mod_label_name.Count(); ++l)
{
if (mod_Sites[mainW.Dis_help.Psm_help.Pep.Sq.Length + 1].Mod_Flag == Config_Help.mod_label_name[l])
{
index = l;
break;
}
}
mods_str += (mainW.Dis_help.Psm_help.Pep.Sq.Length + 1) + "," + mod_Sites[mainW.Dis_help.Psm_help.Pep.Sq.Length + 1].Mod + "#" + index + ";";
//mainW.Dis_help.Psm_help.Pep.Mods.Add(new Modification(mainW.Dis_help.Psm_help.Pep.Sq.Length + 1, (double)Config_Help.modStr_hash[mod_Sites[mainW.Dis_help.Psm_help.Pep.Sq.Length + 1].Mod], mod_Sites[mainW.Dis_help.Psm_help.Pep.Sq.Length + 1].Mod));
}
double pep_theory_mass = 0.0;
if (mainW.selected_psm != null)
{
mainW.Dis_help.Psm_help.Pep.Mods = Modification.get_modSites(mainW.Dis_help.Psm_help.Pep.Sq, mods_str, int.Parse(mainW.selected_psm.Pep_flag), ref pep_theory_mass);
}
else
{
mainW.Dis_help.Psm_help.Pep.Mods = Modification.get_modSites(mainW.Dis_help.Psm_help.Pep.Sq, mods_str, 0, ref pep_theory_mass);
}
mainW.Dis_help.Psm_help.Pep.Pepmass = pep_theory_mass;
//mainW.Dis_help.Psm_help.aa_index = this.aa_index_comboBox.SelectedIndex + 1;
mainW.Dis_help.Psm_help.Pep.Tag_Flag = this.aa_index_comboBox.SelectedIndex + 1;
mainW.psm_help = mainW.Dis_help.Psm_help as PSM_Help;
MS2_Help ms2_help = new MS2_Help(this.mainW.Model2, this.mainW.Dis_help, Ladder_Help.Scale_Width, Ladder_Help.Scale_Height);
mainW.new_peptide = mainW.Dis_help.Psm_help.Pep;
ms2_help.window_sizeChg_Or_ZoomPan();
}
catch (Exception exe)
{
return;
}
}
