/// <summary>
/// Reads peptide Fasta-Sequence(s) and generates HELMNotation
/// </summary>
/// <param name="peptide"></param>
/// <returns></returns>
public string GenerateHELMFromFastaPeptide(string peptide)
{
peptide = Lex.AdjustEndOfLineCharacters(peptide, "\n");
Task <string> task = WSC.GenerateHELMInputPostPEPTIDEAsync(peptide);
return(GetStringResult(task, "HELMNotation")); // ">PEPTIDE1\nALC\n" ===> {"HELMNotation":"PEPTIDE1{A.L.C}$$$$" }
}
/// <summary>
/// Reads rna Fasta-Sequence(s) and generates HELMNotation
/// </summary>
/// <param name="rna"></param>
/// <returns></returns>
public string GenerateHELMFromFastaRNA(string rna)
{
rna = Lex.AdjustEndOfLineCharacters(rna, "\n");
Task <string> task = WSC.GenerateHELMInputPostRNAAsync(rna);
return(GetStringResult(task, "HELMNotation")); // ===> RNA1{R(U)P.R(T)P.R(G)P.R(C)P.R(A)}$$$$
}
int ShowInstance(
string message,
string caption,
string button1,
string button2,
string button3,
string button4,
MessageBoxIcon icon,
int width = -1,
int height = -1)
{
IWin32Window owner = SessionManager.ActiveForm;
DialogResult dr;
try
{
// Use DevExpress message box
if (Message == null)
{
XtraMessageBox.SmartTextWrap = true;
XtraMessageBoxArgs mba = new XtraMessageBoxArgs();
mba.Owner = Owner;
mba.Text = message;
mba.Caption = caption;
mba.Buttons = new DialogResult[] { DialogResult.OK };
mba.AllowHtmlText = DevExpress.Utils.DefaultBoolean.False;
dr = XtraMessageBox.Show(mba);
return((int)dr);
}
if (width > 0) // size specified
{
Width = width;
Height = height;
}
Text = caption;
Message.Text = message;
int definedCount = 0;
definedCount += SetupButton(Button1, button1);
definedCount += SetupButton(Button2, button2);
definedCount += SetupButton(Button3, button3);
definedCount += SetupButton(Button4, button4);
int shift = (Button2.Left - Button1.Left) * (4 - definedCount);
Button1.Left += shift;
Button2.Left += shift;
Button3.Left += shift;
Button4.Left += shift;
if (message.Contains("</") || message.Contains("/>") || Lex.Contains(message, "<br>"))
{ // display HTML prompt
Message.Visible = false;
HtmlMessage.Visible = true;
string htmlFile = TempFile.GetTempFileName("html");
StreamWriter sw = new StreamWriter(htmlFile);
int backColor = ((BackColor.R * 256 + BackColor.G) * 256) + BackColor.B;
string hexColor = String.Format("#{0:X}", backColor);
if (!Lex.Contains(message, "<body")) // set basic style for page
{
sw.Write("<body " +
" topmargin='0' leftmargin='0' marginwidth='0' marginheight='0' hspace='0' vspace='0' " +
" style=\"font-size:8.5pt;font-family:'Tahoma';background-color:" + hexColor + "\">");
}
else // just try to set matching background color
{
message = Lex.Replace(message, "background-color: #FFFFFF", "background-color: " + hexColor);
}
message = message.Replace("\n", "<br>");
message = message.Replace("\r", "");
sw.Write(message);
if (!Lex.Contains(message, "<body"))
{
sw.Write("</body>");
}
sw.Close();
HtmlMessage.Navigate(htmlFile);
}
else // display simple label prompt
{
HtmlMessage.Visible = false;
Message.Visible = true;
Message.BackColor = Message.Parent.BackColor;
if (Lex.Contains(message, "<br>")) // replace "<br>" with newlines
{
message = message.Replace("<br>", "\n");
}
message = Lex.AdjustEndOfLineCharacters(message, "\n"); // convert any new line chars to standard char
Message.Lines = message.Split('\n');
if (Message.Lines.Length <= 4)
{
Message.BorderStyle = BorderStyles.NoBorder;
Message.Properties.ScrollBars = ScrollBars.None;
}
else
{
Message.BorderStyle = BorderStyles.Default;
Message.Properties.ScrollBars = ScrollBars.Vertical;
}
//Message.Text = prompt;
}
SetIconImageIndex(IconImage, icon); // set the proper icon
owner = SessionManager.ActiveForm;
//owner = null; // debug (switching to another app and then back to the main form does not bring up this modal dialog)
dr = ShowDialog(owner);
return((int)dr);
}
catch (Exception ex)
{
string errorMsg = "Show: " + message + "\r\n" + new StackTrace(true);
ClientLog.Message(errorMsg);
DebugLog.Message(errorMsg);
return((int)DialogResult.OK);
}
}
