// Use this for initialization
void Start()
{
sample = new string[lslChannelCount];
lslStreamInfo = new LSL.liblsl.StreamInfo(
lslStreamName,
lslStreamType,
lslChannelCount,
nominalRate,
lslChannelFormat,
unique_source_id);
lslOutlet = new LSL.liblsl.StreamOutlet(lslStreamInfo);
}
// This restores the last Study/probe used
public void RegisterQuickStart(object sender, EventArgs e)
{
string path = System.IO.Path.GetDirectoryName(Assembly.GetEntryAssembly().Location);
path = System.IO.Path.Combine(path, "LastSettings.xml");
// Read the Config.xml file
XmlDocument doc = new XmlDocument();
doc.Load(path);
XmlNodeList elemList;
elemList = doc.GetElementsByTagName("Investigator");
string investigator = elemList[0].InnerXml.Trim();
elemList = doc.GetElementsByTagName("Study");
string study = elemList[0].InnerXml.Trim();
elemList = doc.GetElementsByTagName("probefile");
string probefile = elemList[0].InnerXml.Trim();
int[] lambda = MainClass.win.settings.system_Info.wavelengths;
nirs.core.Probe probe = nirs.io.LoadProbe(probefile, lambda);
// Add channels for Optical Density, HbO2, and HbR
int cnt = probe.ChannelMap.Length;
nirs.ChannelMap[] ChannelMap = new nirs.ChannelMap[cnt * 2 + 2 * cnt / probe.numWavelengths];
for (int ii = 0; ii < cnt; ii++)
{
ChannelMap[ii] = probe.ChannelMap[ii];
}
for (int ii = 0; ii < cnt; ii++)
{
ChannelMap[ii + cnt] = probe.ChannelMap[ii];
ChannelMap[ii + cnt].datasubtype = string.Format("ΔOD {0}nm", ChannelMap[ii].wavelength);
}
for (int ii = 0; ii < cnt / probe.numWavelengths; ii++)
{
ChannelMap[ii + 2 * cnt] = probe.ChannelMap[ii];
ChannelMap[ii + 2 * cnt].datasubtype = "HbO2";
}
for (int ii = cnt / probe.numWavelengths; ii < cnt; ii++)
{
ChannelMap[ii + 2 * cnt] = probe.ChannelMap[ii];
ChannelMap[ii + 2 * cnt].datasubtype = "Hb";
}
probe.ChannelMap = ChannelMap;
probe.measlistAct = new bool[probe.ChannelMap.Length];
for (int ii = 0; ii < probe.ChannelMap.Length; ii++)
{
probe.measlistAct[ii] = true;
}
Gdk.Color[] cmap = new Gdk.Color[probe.ChannelMap.Length];
for (int ii = 0; ii < probe.numChannels; ii++)
{
cmap[ii] = probe.colormap[ii];
cmap[probe.numChannels + ii] = probe.colormap[ii];
cmap[probe.numChannels * 2 + ii] = probe.colormap[ii];
}
probe.colormap = cmap;
nirsdata = new List <nirs.core.Data>();
for (int i = 0; i < MainClass.devices.Length; i++)
{
nirs.core.Data data = new nirs.core.Data
{
demographics = new nirs.Dictionary()
};
data.demographics.set("SubjID", "");
data.demographics.set("Investigator", investigator);
data.demographics.set("Study", study);
data.demographics.set("Gender", "");
data.demographics.set("Group", "");
data.demographics.set("Age", "");
data.demographics.set("Instrument", MainClass.win.settings.SYSTEM);
data.demographics.set("head_circumference", "");
data.demographics.set("Technician", "");
data.demographics.set("comments", "");
DateTime now = DateTime.Now;
data.demographics.set("scan_date", now.ToString("F"));
data.probe = probe.Clone();
nirsdata.Add(data);
}
ListStore ClearList = new ListStore(typeof(string));
MainClass.win._handles.whichdata.Model = ClearList;
List <string> datatypes = new List <string>();
for (int ii = 0; ii < probe.ChannelMap.Length; ii++)
{
datatypes.Add(probe.ChannelMap[ii].datasubtype);
}
datatypes = datatypes.Distinct().ToList();
foreach (string s in datatypes)
{
MainClass.win._handles.whichdata.AppendText(s);
}
for (int dI = probe.numDet; dI < MainClass.win._handles.detectors.Count; dI++)
{
MainClass.win._handles.detectors[dI].frame.Sensitive = false;
MainClass.win._handles.detectors[dI].vScale.Sensitive = false;
MainClass.win._handles.detectors[dI].vScale.Value = 0;
MainClass.win._handles.detectors[dI].led.Color = new Gdk.Color(93, 93, 93);
}
for (int sI = probe.numSrc; sI < MainClass.win._handles.lasers.Count; sI++)
{
MainClass.win._handles.lasers[sI].frame.Sensitive = false;
for (int wI = 0; wI < MainClass.win._handles.lasers[sI].buttons.Length; wI++)
{
MainClass.win._handles.lasers[sI].spinButtons[wI].Sensitive = false;
MainClass.win._handles.lasers[sI].buttons[wI].Sensitive = false;
}
}
#if ADDLSL
MainClass.win.dataLSL = new LSL.liblsl.StreamOutlet[MainClass.devices.Length];
for (int ii = 0; ii < MainClass.devices.Length; ii++)
{
int fs = MainClass.devices[ii].GetSampleRate();
string name = string.Format("NIRSRecordIRData_{0}", ii + 1);
LSL.liblsl.StreamInfo info = new LSL.liblsl.StreamInfo(name, "NIRS", MainClass.win.nirsdata[ii].probe.numChannels,
(double)fs, LSL.liblsl.channel_format_t.cf_int32);
MainClass.win.dataLSL[ii] = new LSL.liblsl.StreamOutlet(info);
}
#endif
comboboxdeviceDemo.Active = 0;
MainClass.win._handles.whichdata.Active = 0;
MainClass.win.EnableControls(true);
MainClass.win._handles.SDGplot.QueueDraw();
}
protected void RegisterAccept(object sender, EventArgs e)
{
int i = combobox_hyperscanning.Active;
demo[i].set("SubjID", comboboxentry_subjID.ActiveText);
demo[i].set("Investigator", combobox_investigators.ActiveText);
demo[i].set("Study", combobox_studies.ActiveText);
demo[i].set("Gender", demo_gender.ActiveText);
demo[i].set("Group", demo_group.Text);
demo[i].set("Age", demo_age.Text);
demo[i].set("Instrument", MainClass.win.settings.SYSTEM);
demo[i].set("head_circumference", demo_headsize.Text);
demo[i].set("Technician", demo_tecnician.Text);
demo[i].set("comments", demo_comments.Buffer.Text);
// Add channels for Optical Density, HbO2, and HbR
int cnt = probe.ChannelMap.Length;
nirs.ChannelMap[] ChannelMap = new nirs.ChannelMap[cnt * 2 + 2 * cnt / probe.numWavelengths];
for (int ii = 0; ii < cnt; ii++)
{
ChannelMap[ii] = probe.ChannelMap[ii];
}
for (int ii = 0; ii < cnt; ii++)
{
ChannelMap[ii + cnt] = probe.ChannelMap[ii];
ChannelMap[ii + cnt].datasubtype = String.Format("ΔOD {0}nm", ChannelMap[ii].wavelength);
}
for (int ii = 0; ii < cnt / probe.numWavelengths; ii++)
{
ChannelMap[ii + 2 * cnt] = probe.ChannelMap[ii];
ChannelMap[ii + 2 * cnt].datasubtype = "HbO2";
}
for (int ii = cnt / probe.numWavelengths; ii < cnt; ii++)
{
ChannelMap[ii + 2 * cnt] = probe.ChannelMap[ii];
ChannelMap[ii + 2 * cnt].datasubtype = "Hb";
}
probe.ChannelMap = ChannelMap;
for (int dId = 0; dId < MainClass.devices.Length; dId++)
{
nirs.core.Data data = new nirs.core.Data();
data.demographics = demo[dId];
data.demographics.set("Investigator", combobox_investigators.ActiveText);
data.demographics.set("Study", combobox_studies.ActiveText);
data.demographics.set("Instrument", MainClass.win.settings.SYSTEM);
DateTime now = DateTime.Now;
data.demographics.set("scan_date", now.ToString("F"));
data.probe = probe.Clone();
data.probe.measlistAct = new bool[data.probe.ChannelMap.Length];
for (int ii = 0; ii < data.probe.ChannelMap.Length; ii++)
{
data.probe.measlistAct[ii] = true;
}
Gdk.Color[] cmap = new Gdk.Color[data.probe.ChannelMap.Length];
for (int ii = 0; ii < data.probe.numChannels; ii++)
{
cmap[ii] = data.probe.colormap[ii];
cmap[data.probe.numChannels + ii] = data.probe.colormap[ii];
cmap[data.probe.numChannels * 2 + ii] = data.probe.colormap[ii];
}
data.probe.colormap = cmap;
Gtk.ListStore ClearList = new Gtk.ListStore(typeof(string));
MainClass.win._handles.whichdata.Model = ClearList;
List <string> datatypes = new List <string>();
for (int ii = 0; ii < data.probe.ChannelMap.Length; ii++)
{
datatypes.Add(data.probe.ChannelMap[ii].datasubtype);
}
datatypes = datatypes.Distinct().ToList();
foreach (string s in datatypes)
{
MainClass.win._handles.whichdata.AppendText(s);
}
MainClass.win._handles.whichdata.Active = 0;
MainClass.win.nirsdata.Add(data);
}
// Save the tmp file for quick reload
string path = System.IO.Path.GetDirectoryName(Assembly.GetEntryAssembly().Location);
path = System.IO.Path.Combine(path, "LastSettings.xml");
XmlWriterSettings settings = new XmlWriterSettings();
settings.Indent = true;
settings.IndentChars = (" ");
settings.CloseOutput = true;
settings.OmitXmlDeclaration = true;
using (XmlWriter writer = XmlWriter.Create(path, settings))
{
writer.WriteStartElement("settings");
writer.WriteElementString("probefile", probefilename);
writer.WriteElementString("Investigator", (string)demo[i].get("Investigator"));
writer.WriteElementString("Study", (string)demo[i].get("Study"));
writer.WriteEndElement();
writer.Flush();
}
MainClass.win.dataLSL = new LSL.liblsl.StreamOutlet[MainClass.devices.Length];
for (int ii = 0; ii < MainClass.devices.Length; ii++)
{
int fs = MainClass.devices[ii].GetSampleRate();
string name = string.Format("NIRSRecordIRData_{0}", ii + 1);
LSL.liblsl.StreamInfo info = new LSL.liblsl.StreamInfo(name, "NIRS", MainClass.win.nirsdata[ii].probe.numChannels,
(double)fs, LSL.liblsl.channel_format_t.cf_int32);
MainClass.win.dataLSL[ii] = new LSL.liblsl.StreamOutlet(info);
}
MainClass.win.EnableControls(true);
MainClass.win.ShowAll();
MainClass.win._handles.SDGplot.QueueDraw();
Destroy();
}
