public void test2()
{
IsosResultComparer comparer = new IsosResultComparer();
IsosResultUtilities isosUtil = new IsosResultUtilities();
isosUtil.LoadResults(xcaliburThrashIsos1, DeconTools.Backend.Globals.MSFileType.Finnigan);
IsosResultUtilities isosUtil2 = new IsosResultUtilities();
isosUtil2.LoadResults(xcaliburThrashIsos1, DeconTools.Backend.Globals.MSFileType.Finnigan);
List <IsosResult> resultList1 = isosUtil.Results.Where(p => p.ScanSet.PrimaryScanNumber == 6005).ToList();
List <IsosResult> resultList2 = isosUtil2.Results.Where(p => p.ScanSet.PrimaryScanNumber == 6005).ToList();;
Assert.AreEqual(86, resultList1.Count);
Assert.AreEqual(86, resultList2.Count);
resultList1.RemoveAt(30);
resultList1.RemoveAt(30);
resultList1.RemoveAt(30);
resultList2.RemoveAt(0);
resultList2.RemoveAt(0);
resultList2.RemoveAt(0);
resultList2.RemoveAt(0);
Assert.AreEqual(86 - 4, resultList2.Count);
Assert.AreEqual(86 - 3, resultList1.Count);
List <IsosResult> intersectedList = comparer.GetIntersectionBetweenTwoIsosResultSets(resultList1, resultList2);
Assert.AreEqual(86 - 7, intersectedList.Count);
}
public void compareThrashRapidTest1()
{
IsosResultComparer comparer = new IsosResultComparer();
IsosResultUtilities isosUtil = new IsosResultUtilities();
isosUtil.LoadResults(isosByThrash1, DeconTools.Backend.Globals.MSFileType.Finnigan);
IsosResultUtilities isosUtil2 = new IsosResultUtilities();
isosUtil2.LoadResults(isosByRapid1, DeconTools.Backend.Globals.MSFileType.Finnigan);
List <IsosResult> rapidResults = isosUtil2.Results;
List <IsosResult> thrashResults = isosUtil.Results;
Console.WriteLine("Thrash result count = " + thrashResults.Count);
Console.WriteLine("RAPID result count = " + rapidResults.Count);
List <IsosResult> intersectedResults = comparer.GetIntersectionBetweenTwoIsosResultSets(thrashResults, rapidResults);
//List<IsosResult> intersectedResults2 = comparer.GetIntersectionTheManualWay(thrashResults, rapidResults);
//List<IsosResult> intersectedResults3 = comparer.GetIntersectionTheManualWay(rapidResults, thrashResults);
List <IsosResult> unmatchedResults1 = comparer.GetUniqueBetweenTwoIsosResultSets(rapidResults, thrashResults);
List <IsosResult> unmatchedResults2 = comparer.GetUniqueBetweenTwoIsosResultSets(thrashResults, rapidResults);
Console.WriteLine("Intersected result count = " + intersectedResults.Count);
//Console.WriteLine("Manual Intersected result count = " + intersectedResults2.Count);
//Console.WriteLine("Manual Intersected result count = " + intersectedResults3.Count);
Console.WriteLine("unmatched result count = " + unmatchedResults1.Count);
Console.WriteLine("unmatched result count2 = " + unmatchedResults2.Count);
}
public void compareRAWData_cacheONvs_cacheOffTest1()
{
IsosResultComparer comparer = new IsosResultComparer();
IsosResultUtilities isosUtil = new IsosResultUtilities();
isosUtil.LoadResults(rawIsosCacheOnCompleteFitOFF, DeconTools.Backend.Globals.MSFileType.Finnigan);
IsosResultUtilities isosUtil2 = new IsosResultUtilities();
isosUtil2.LoadResults(rawIsosCacheOFFCompleteFitOFF, DeconTools.Backend.Globals.MSFileType.Finnigan);
List <IsosResult> cacheOnResults = isosUtil.Results;
List <IsosResult> cacheOffResults = isosUtil2.Results;
Console.WriteLine("cache on count = " + cacheOnResults.Count);
Console.WriteLine("cache off count = " + cacheOffResults.Count);
List <IsosResult> intersectedResults = comparer.GetIntersectionBetweenTwoIsosResultSets(cacheOffResults, cacheOnResults);
List <IsosResult> unmatchedResults1 = comparer.GetUniqueBetweenTwoIsosResultSets(cacheOnResults, cacheOffResults);
List <IsosResult> unmatchedResults2 = comparer.GetUniqueBetweenTwoIsosResultSets(cacheOffResults, cacheOnResults);
List <IsosResult> intersectedResults2 = comparer.GetIntersectionTheManualWay(cacheOnResults, cacheOffResults);
//List<IsosResult> intersectedResults3 = comparer.GetIntersectionTheManualWay(rapidResults, thrashResults);
Console.WriteLine("Intersected result count = " + intersectedResults.Count);
Console.WriteLine("unmatched result count = " + unmatchedResults1.Count);
Console.WriteLine("unmatched result count2 = " + unmatchedResults2.Count);
Console.WriteLine("Manual Intersected result count = " + intersectedResults2.Count);
//Console.WriteLine("Manual Intersected result count = " + intersectedResults3.Count);
}
public void compareThrashRapidTest2()
{
IsosResultComparer comparer = new IsosResultComparer();
Run run = new XCaliburRun(xcaliburTestfile, 6000, 6050);
Project.getInstance().RunCollection.Add(run);
ResultCollection results = new ResultCollection(run);
TaskCollection taskCollection = new TaskCollection();
ScanSetCollectionCreator scansetCreator = new ScanSetCollectionCreator(run, run.MinScan, run.MaxScan, 1, 1);
scansetCreator.Create();
Task msgen = new GenericMSGenerator();
DeconToolsV2.Peaks.clsPeakProcessorParameters peakDetParams = new DeconToolsV2.Peaks.clsPeakProcessorParameters();
peakDetParams.SignalToNoiseThreshold = 3;
peakDetParams.PeakBackgroundRatio = 0.5;
Task peakDetector = new DeconToolsPeakDetector(peakDetParams);
Task thrashDecon = new HornDeconvolutor();
Task rapidDecon = new RapidDeconvolutor();
taskCollection.TaskList.Add(msgen);
taskCollection.TaskList.Add(peakDetector);
taskCollection.TaskList.Add(thrashDecon);
TaskController taskcontroller = new BasicTaskController(taskCollection);
taskcontroller.Execute(Project.getInstance().RunCollection);
Assert.AreEqual(644, Project.getInstance().RunCollection[0].ResultCollection.ResultList.Count);
List <IsosResult> thrashResults = new List <IsosResult>(Project.getInstance().RunCollection[0].ResultCollection.ResultList);
taskCollection.TaskList.Remove(thrashDecon);
taskCollection.TaskList.Add(rapidDecon);
Project.getInstance().RunCollection[0].ResultCollection.ResultList.Clear();
taskcontroller.Execute(Project.getInstance().RunCollection);
Assert.AreEqual(2472, Project.getInstance().RunCollection[0].ResultCollection.ResultList.Count);
List <IsosResult> rapidResults = new List <IsosResult>(Project.getInstance().RunCollection[0].ResultCollection.ResultList);
Console.WriteLine("Thrash result count = " + thrashResults.Count);
Console.WriteLine("RAPID result count = " + rapidResults.Count);
List <IsosResult> intersectedResults = comparer.GetIntersectionBetweenTwoIsosResultSets(thrashResults, rapidResults);
List <IsosResult> intersectedResults2 = comparer.GetIntersectionTheManualWay(thrashResults, rapidResults);
//List<IsosResult> intersectedResults3 = comparer.GetIntersectionTheManualWay(rapidResults, thrashResults);
List <IsosResult> unmatchedResults1 = comparer.GetUniqueBetweenTwoIsosResultSets(rapidResults, thrashResults);
List <IsosResult> unmatchedResults2 = comparer.GetUniqueBetweenTwoIsosResultSets(thrashResults, rapidResults);
Console.WriteLine("Intersected result count = " + intersectedResults.Count);
Console.WriteLine("Manual Intersected result count = " + intersectedResults2.Count);
//Console.WriteLine("Manual Intersected result count = " + intersectedResults3.Count);
Console.WriteLine("unmatched result count = " + unmatchedResults1.Count);
Console.WriteLine("unmatched result count2 = " + unmatchedResults2.Count);
}