private void InitMzXMLFile()
{
int scanCount = LastScanNum - FirstScanNum + 1;
double startTime = 0, endTime = 0;
_rawReader.GetStartTime(ref startTime);
_rawReader.GetEndTime(ref endTime);
// get the instrument model
String msModel = null;
_rawReader.GetInstModel(ref msModel);
// get acquisition software version
String softwareVersion = null;
_rawReader.GetInstSoftwareVersion(ref softwareVersion);
String filter = null;
_rawReader.GetFilterForScanNum(FirstScanNum, ref filter);
String rawConverterVersion = "1.0.0.x";
_mzXMLWriter.WriteHeader(scanCount, startTime * 60, endTime * 60, rawFileName, "Thermo Scientific",
msModel, "nanoelectrospray", msModel, msModel, "acquisition", "Xcalibur", softwareVersion, rawConverterVersion);
}
public string GetSofwareVersion()
{
string softwareVersion = null;
_rawConnection.GetInstSoftwareVersion(ref softwareVersion);
return(softwareVersion);
}
public static ThermoGlobalParams GetAllGlobalStuff(IXRawfile5 _rawConnection, ManagedThermoHelperLayer.PrecursorInfo[] couldBePrecursor, string filePath)
{
int pnNumInstMethods = 0;
_rawConnection.GetNumInstMethods(ref pnNumInstMethods);
string[] instrumentMethods = new string[pnNumInstMethods];
for (int nInstMethodItem = 0; nInstMethodItem < pnNumInstMethods; nInstMethodItem++)
{
string pbstrInstMethod = null;
_rawConnection.GetInstMethod(nInstMethodItem, ref pbstrInstMethod);
instrumentMethods[nInstMethodItem] = pbstrInstMethod;
}
string pbstrInstSoftwareVersion = null;
_rawConnection.GetInstSoftwareVersion(ref pbstrInstSoftwareVersion);
string pbstrInstName = null;
_rawConnection.GetInstName(ref pbstrInstName);
string pbstrInstModel = null;
_rawConnection.GetInstModel(ref pbstrInstModel);
int pnControllerNumber = 0;
int pnControllerType = 0;
_rawConnection.GetCurrentController(ref pnControllerType, ref pnControllerNumber);
int[] msOrderByScan = new int[couldBePrecursor.Length];
for (int i = 0; i < couldBePrecursor.Length; i++)
{
_rawConnection.GetMSOrderForScanNum((i + 1), ref msOrderByScan[i]);
}
return(new ThermoGlobalParams(pnNumInstMethods, instrumentMethods, pbstrInstSoftwareVersion, pbstrInstName, pbstrInstModel, pnControllerType, pnControllerNumber, couldBePrecursor, filePath, msOrderByScan));
}