public GeneDatabaseWriter(Stream stream, ISupplementaryAnnotationHeader header, bool leaveOpen = false)
{
_leaveOpen = leaveOpen;
_stream = stream;
_writer = new ExtendedBinaryWriter(stream, new UTF8Encoding(false, true), _leaveOpen);
WriteHeader(header);
}
private void WriteHeader(ISupplementaryAnnotationHeader header)
{
_writer.Write(SaDataBaseCommon.DataHeader);
_writer.Write(SaDataBaseCommon.DataVersion);
_writer.Write(SaDataBaseCommon.SchemaVersion);
_writer.Write((byte)header.GenomeAssembly);
_writer.Write(DateTime.Now.Ticks);
var dataSourceVersions = header.DataSourceVersions.ToList();
_writer.WriteOpt(dataSourceVersions.Count);
foreach (var version in dataSourceVersions)
{
version.Write(_writer);
}
_writer.Write(SaDataBaseCommon.GuardInt);
}
private static SaWriter GetSaWriter(string saPath, ISupplementaryAnnotationHeader header,
List <ISupplementaryInterval> smallVariantIntervals, List <ISupplementaryInterval> svIntervals,
List <ISupplementaryInterval> allVariantIntervals, List <(int, string)> globalMajorAlleleInRefMinors)