public SmallRNAMapperLincRNA(string mapperName, ISmallRNACountProcessorOptions options) : base(mapperName, options, feature => feature.Category.Equals(mapperName))
{
}
public SmallRNAMapperTRNA(ISmallRNACountProcessorOptions options, bool allowNTA, HashSet <string> cca) :
base(new SmallRNABiotype[] { SmallRNABiotype.tRNA, SmallRNABiotype.mt_tRNA }, options)
{
this.allowNTA = allowNTA;
this.cca = cca;
}
public SmallRNAMapperLongRNA(string mapperName, ISmallRNACountProcessorOptions options, Func <FeatureLocation, bool> accept) : base(mapperName, options, accept)
{
}
public SmallRNAMapperMicroRNA(ISmallRNACountProcessorOptions options, bool hasNTA) : base(SmallRNABiotype.miRNA, options)
{
this.hasNTA = hasNTA;
}
public SmallRNAMapperRRNADB(ISmallRNACountProcessorOptions options) : base("rRNADB", options, feature => feature.Name.Contains(SmallRNAConsts.rRNADB_KEY) || feature.Name.Contains("SILVA_"))
{
}
public SmallRNAMapperBiotypes(SmallRNABiotype[] biotypes, ISmallRNACountProcessorOptions options) : base(options)
{
_biotypes = new HashSet <string>(from b in biotypes select b.ToString());
MapperName = StringUtils.Merge(from b in biotypes select b.ToString(), "/");
Accept = m => _biotypes.Contains(m.Category);
}
public SmallRNAMapperBiotype(SmallRNABiotype biotype, ISmallRNACountProcessorOptions options) : base(biotype.ToString(), options, feature => feature.Category.Equals(biotype.ToString()))
{
}
public SmallRNAMapper(string mapperName, ISmallRNACountProcessorOptions options, Func <FeatureLocation, bool> accept)
{
this.MapperName = mapperName;
this.Options = options;
this.Accept = accept;
}
public SmallRNAMapper(ISmallRNACountProcessorOptions options)
{
this.MapperName = "Unknown";
this.Options = options;
this.Accept = m => true;
}
