/// <inheritdoc/>
public async Task PrepareRequestAsync(FhirTransactionContext context, CancellationToken cancellationToken)
{
EnsureArg.IsNotNull(context, nameof(context));
DicomDataset dataset = context.ChangeFeedEntry.Metadata;
if (dataset == null)
{
return;
}
if (!dataset.TryGetSingleValue(DicomTag.PatientID, out string patientId))
{
throw new MissingRequiredDicomTagException(nameof(DicomTag.PatientID));
}
var patientIdentifier = new Identifier(string.Empty, patientId);
FhirTransactionRequestMode requestMode = FhirTransactionRequestMode.None;
Patient existingPatient = await _fhirService.RetrievePatientAsync(patientIdentifier, cancellationToken);
Patient patient = (Patient)existingPatient?.DeepCopy();
if (existingPatient == null)
{
patient = new Patient();
patient.Identifier.Add(patientIdentifier);
requestMode = FhirTransactionRequestMode.Create;
}
_patientSynchronizer.Synchronize(dataset, patient);
if (requestMode == FhirTransactionRequestMode.None &&
!existingPatient.IsExactly(patient))
{
requestMode = FhirTransactionRequestMode.Update;
}
Bundle.RequestComponent request = requestMode switch
{
FhirTransactionRequestMode.Create => GenerateCreateRequest(patientIdentifier),
FhirTransactionRequestMode.Update => GenerateUpdateRequest(patient),
_ => null
};
IResourceId resourceId = requestMode switch
{
FhirTransactionRequestMode.Create => new ClientResourceId(),
_ => existingPatient.ToServerResourceId(),
};
context.Request.Patient = new FhirTransactionRequestEntry(
requestMode,
request,
resourceId,
patient);
}
/// <inheritdoc/>
public async Task <FhirTransactionRequestEntry> BuildAsync(FhirTransactionContext context, CancellationToken cancellationToken)
{
EnsureArg.IsNotNull(context, nameof(context));
EnsureArg.IsNotNull(context.ChangeFeedEntry, nameof(context.ChangeFeedEntry));
EnsureArg.IsNotNull(context.Request, nameof(context.Request));
IResourceId patientId = context.Request.Patient.ResourceId;
ChangeFeedEntry changeFeedEntry = context.ChangeFeedEntry;
Identifier imagingStudyIdentifier = ImagingStudyIdentifierUtility.CreateIdentifier(changeFeedEntry.StudyInstanceUid);
ImagingStudy existingImagingStudy = await _fhirService.RetrieveImagingStudyAsync(imagingStudyIdentifier, cancellationToken);
ImagingStudy imagingStudy = (ImagingStudy)existingImagingStudy?.DeepCopy();
FhirTransactionRequestMode requestMode = FhirTransactionRequestMode.None;
if (existingImagingStudy == null)
{
imagingStudy = new ImagingStudy()
{
Status = ImagingStudy.ImagingStudyStatus.Available,
Subject = patientId.ToResourceReference(),
};
imagingStudy.Identifier.Add(imagingStudyIdentifier);
requestMode = FhirTransactionRequestMode.Create;
}
SynchronizeImagingStudyProperties(context, imagingStudy);
if (requestMode != FhirTransactionRequestMode.Create &&
!existingImagingStudy.IsExactly(imagingStudy))
{
requestMode = FhirTransactionRequestMode.Update;
}
Bundle.RequestComponent request = requestMode switch
{
FhirTransactionRequestMode.Create => ImagingStudyPipelineHelper.GenerateCreateRequest(imagingStudyIdentifier),
FhirTransactionRequestMode.Update => ImagingStudyPipelineHelper.GenerateUpdateRequest(imagingStudy),
_ => null,
};
IResourceId resourceId = requestMode switch
{
FhirTransactionRequestMode.Create => new ClientResourceId(),
_ => existingImagingStudy.ToServerResourceId(),
};
return(new FhirTransactionRequestEntry(
requestMode,
request,
resourceId,
imagingStudy));
}
public FhirTransactionRequestEntry(
FhirTransactionRequestMode requestMode,
Bundle.RequestComponent request,
IResourceId resourceId,
Resource resource)
{
EnsureArg.EnumIsDefined(requestMode, nameof(requestMode));
RequestMode = requestMode;
Request = request;
ResourceId = resourceId;
Resource = resource;
}
public async Task <IEnumerable <FhirTransactionRequestEntry> > BuildAsync(FhirTransactionContext context, CancellationToken cancellationToken)
{
EnsureArg.IsNotNull(context?.ChangeFeedEntry, nameof(context.ChangeFeedEntry));
EnsureArg.IsNotNull(context.Request, nameof(context.Request));
IResourceId patientId = context.Request.Patient.ResourceId;
IResourceId imagingStudyId = context.Request.ImagingStudy.ResourceId;
ChangeFeedEntry changeFeedEntry = context.ChangeFeedEntry;
Identifier identifier = IdentifierUtility.CreateIdentifier(changeFeedEntry.StudyInstanceUid);
IReadOnlyCollection <Observation> observations = _observationParser.Parse(changeFeedEntry.Metadata, patientId.ToResourceReference(), imagingStudyId.ToResourceReference(), identifier);
if (observations.Count == 0)
{
return(Enumerable.Empty <FhirTransactionRequestEntry>());
}
Identifier imagingStudyIdentifier = imagingStudyId.ToResourceReference().Identifier;
IEnumerable <Observation> existingDoseSummariesAsync = imagingStudyIdentifier != null
? await _fhirService
.RetrieveObservationsAsync(
imagingStudyId.ToResourceReference().Identifier,
cancellationToken)
: new List <Observation>();
// TODO: Figure out a way to match existing observations with newly created ones.
List <FhirTransactionRequestEntry> fhirRequests = new List <FhirTransactionRequestEntry>();
foreach (var observation in observations)
{
fhirRequests.Add(new FhirTransactionRequestEntry(
FhirTransactionRequestMode.Create,
new Bundle.RequestComponent()
{
Method = Bundle.HTTPVerb.POST,
Url = ResourceType.Observation.GetLiteral()
},
new ClientResourceId(),
observation));
}
return(fhirRequests);
}
public async Task PrepareRequestAsync(FhirTransactionContext context, CancellationToken cancellationToken)
{
EnsureArg.IsNotNull(context, nameof(context));
string queryParameter = $"name={FhirTransactionConstants.EndpointName}&connection-type={FhirTransactionConstants.EndpointConnectionTypeSystem}|{FhirTransactionConstants.EndpointConnectionTypeCode}";
Endpoint endpoint = await _fhirService.RetrieveEndpointAsync(queryParameter, cancellationToken);
FhirTransactionRequestMode requestMode = FhirTransactionRequestMode.None;
if (endpoint == null)
{
endpoint = new Endpoint()
{
Name = FhirTransactionConstants.EndpointName,
Status = Endpoint.EndpointStatus.Active,
ConnectionType = new Coding()
{
System = FhirTransactionConstants.EndpointConnectionTypeSystem,
Code = FhirTransactionConstants.EndpointConnectionTypeCode,
},
Address = _dicomWebEndpoint,
PayloadType = new List <CodeableConcept>
{
new CodeableConcept(string.Empty, string.Empty, FhirTransactionConstants.EndpointPayloadTypeText),
},
PayloadMimeType = new string[]
{
FhirTransactionConstants.DicomMimeType,
},
};
requestMode = FhirTransactionRequestMode.Create;
}
else
{
// Make sure the address matches.
if (!string.Equals(endpoint.Address, _dicomWebEndpoint, StringComparison.Ordinal))
{
// We have found an endpoint with matching name and connection-type but the address does not match.
throw new FhirResourceValidationException(DicomCastCoreResource.MismatchEndpointAddress);
}
}
Bundle.RequestComponent request = requestMode switch
{
FhirTransactionRequestMode.Create => new Bundle.RequestComponent()
{
Method = Bundle.HTTPVerb.POST,
IfNoneExist = queryParameter,
Url = ResourceType.Endpoint.GetLiteral(),
},
_ => null,
};
IResourceId resourceId = requestMode switch
{
FhirTransactionRequestMode.Create => new ClientResourceId(),
_ => endpoint.ToServerResourceId(),
};
context.Request.Endpoint = new FhirTransactionRequestEntry(
requestMode,
request,
resourceId,
endpoint);
}
