public ActionResult Index(HttpPostedFileBase file, WSI wsi, Stain stain, Organ organ, Tissue tissue)
{
//TODO
var reglement = manager.GetReglement(stain.Name, organ.Name);
//var sharpnessEvaluationParameters = '+' + reglament.TileSize.ToString() + '+' + reglament.SharpnessThresholdValue+ '+' + reglament.Scaling.ToString()+ '+' + reglament.Edges.ToString();
//Directory for WSI Uploads on the Server
var root = @"C:\Users\AnnaToshiba2\Desktop\WSI\Sharpness_WebApp_Uploads\";
var fileName = "";
wsi.WSIId = Guid.NewGuid();
//Create a directory for a report and WSI
string outputDir = Path.Combine(Path.GetDirectoryName(root), User.Identity.GetUserName(), "WSI " + wsi.WSIId + @"\");
if (!Directory.Exists(outputDir))
{
Directory.CreateDirectory(outputDir);
}
if (file.ContentLength > 0)
{
fileName = Path.GetFileName(file.FileName);
var path = Path.Combine(outputDir, fileName);
file.SaveAs(path);
wsi.Path = path;
wsi.UserId = User.Identity.GetUserId();
repoWSIs.Insert(wsi);
}
//Generate a report link for the Viewer
var reportLink = User.Identity.GetUserName() + "/" + "WSI " + wsi.WSIId + "/" + fileName + " ";
var evaluationLink = root + reportLink.Replace("/", @"\");
//External sharpness console app
Process sharpnessConsoleApp = new Process();
//Path to the sharpness console app
sharpnessConsoleApp.StartInfo.FileName = @"C:\Users\AnnaToshiba2\Documents\GitHub\sharpness\sharpness console App\SharpnessExplorationCurrent\SharpnessExplorationCurrent\bin\x64\Release\SharpnessExplorationCurrent.exe";
//WSI Path + Reglemnets arguments
//structure -> wsi.path#(separator)#tileSize#threshold#scale#edges
sharpnessConsoleApp.StartInfo.Arguments = String.Format(@"""{0}""", wsi.Path + "#" + reglement.TileSize.ToString() + "#" + reglement.Scaling.ToString() + "#" + reglement.SharpnessThresholdValue.ToString() + "#" + reglement.Edges.ToString());
sharpnessConsoleApp.Start();
sharpnessConsoleApp.WaitForExit();
var report = new Report();
//TODO
//only one reglement is possible
report.ReglementId = reglement.ReglementId;
report.Comment = "Kommentar";
report.OrganName = organ.Name;
if (tissue != null)
{
report.TissueName = tissue.Name;
}
if (tissue == null)
{
report.TissueName = null;
}
report.WSIId = wsi.WSIId;
report.StainName = stain.Name;
report.SharpnessMapPath = outputDir + Path.GetFileNameWithoutExtension(fileName) + ".png";
report.SharpnessMapPathDebug = outputDir + Path.GetFileNameWithoutExtension(fileName) + "Debug.png";
var semaphoreValues = manager.GetSemaphoreValues(report.SharpnessMapPath);
var channelsValues = manager.GetChannelsValues(report.SharpnessMapPathDebug);
report.Semaphore_Red = semaphoreValues[0];
report.Semaphore_Green = semaphoreValues[1];
report.Semaphore_Yellow = semaphoreValues[2];
report.Red_Channel = channelsValues[0];
report.Blue_Channel = channelsValues[1];
if (semaphoreValues[1] > reglement.AcceptanceValue)
{
report.Evaluation = true;
}
else
{
report.Evaluation = false;
}
report.ReportLink = reportLink;
report.UserId = User.Identity.GetUserId();
repoReports.Insert(report);
return(RedirectToAction("Report", new { ReportId = report.ReportId }));
}
