private bool AddPeaks(IRawFile rawReader, int scan, SimplePeakChro chro, bool bIdentified)
{
var pkl = rawReader.GetPeakList(scan, chro.Mz - chro.MzTolerance, chro.Mz + chro.MzTolerance);
if (pkl.Count == 0)
{
return(false);
}
var p = (from o in pkl
where (o.Charge == chro.Charge) || (o.Charge == 0)
orderby o.Intensity descending
select o).FirstOrDefault();
if (null == p)
{
return(false);
}
var iit = rawReader.GetIonInjectionTime(scan);
if (iit <= 0)
{
iit = 1.0;
}
chro.Peaks.Add(new ScanPeak()
{
Mz = p.Mz,
Intensity = p.Intensity,
Charge = p.Charge,
Scan = scan,
RetentionTime = rawReader.ScanToRetentionTime(scan),
IonInjectionTime = iit,
Identified = bIdentified
});
return(true);
}
