public IMoleculeBuilder MapFrom(FlatMolecule flatMolecule, IFormulaCache formulaCache)
{
var molecule = _objectBaseFactory.Create <IMoleculeBuilder>();
molecule.Name = flatMolecule.Id;
molecule.IsFloating = flatMolecule.IsFloating;
molecule.QuantityType = flatMolecule.MoleculeType;
molecule.DefaultStartFormula = _formulaFactory.RateFor(flatMolecule, new FormulaCache());
_parameterContainerTask.AddMoleculeParametersTo(molecule, formulaCache);
return(molecule);
}
private void addDrugParametersTo(IMoleculeBuilder molecule, IFormulaCache formulaCache)
{
var allExistingParameters = molecule.AllParameters().ToList();
molecule.Name = CoreConstants.Molecule.Drug;
_parameterContainerTask.AddMoleculeParametersTo(molecule, formulaCache);
foreach (var parameter in molecule.AllParameters().Where(p => !allExistingParameters.Contains(p)))
{
parameter.BuildingBlockType = PKSimBuildingBlockType.Simulation;
parameter.Visible = false;
parameter.CanBeVariedInPopulation = false;
molecule.Add(parameter);
}
setDefaultParameterValues(molecule);
//default value for floating in lumen should be 0
molecule.Parameter(CoreConstants.Parameter.IS_FLOATING_IN_LUMEN).Value = 0;
}