public OutputMapSiteVar(string FileName, ISiteVar <T> values, Func <T, M> func)
{
try
{
using (IOutputRaster <IntPixel> outputRaster = PlugIn.ModelCore.CreateRaster <IntPixel>(FileName, PlugIn.ModelCore.Landscape.Dimensions))
{
foreach (Site site in PlugIn.ModelCore.Landscape.AllSites)
{
if (site.IsActive)
{
try
{
outputRaster.BufferPixel.MapCode.Value = (int)double.Parse(func(values[site]).ToString());// int.Parse(values[site].ToString());
}
catch (System.Exception e)
{
System.Console.WriteLine("Cannot write " + FileName + " for site " + site.Location.ToString() + " " + e.Message);
}
}
else
{
outputRaster.BufferPixel.MapCode.Value = 0;
}
outputRaster.WriteBufferPixel();
}
}
}
catch (System.Exception e)
{
System.Console.WriteLine("Cannot write " + FileName + " " + e.Message);
}
}
//---------------------------------------------------------------------
private void CreateCommunityMap()
{
string path = MapNames.ReplaceTemplateVars(outputMapName, PlugIn.ModelCore.CurrentTime);
//PlugIn.ModelCore.UI.WriteLine(" Writing community biomass map to {1} ...", path);
PlugIn.ModelCore.UI.WriteLine(" Writing community biomass map to {0} ...", path);
using (IOutputRaster <IntPixel> outputRaster = modelCore.CreateRaster <IntPixel>(path, modelCore.Landscape.Dimensions))
{
IntPixel pixel = outputRaster.BufferPixel;
foreach (Site site in PlugIn.ModelCore.Landscape.AllSites)
{
if (site.IsActive)
{
pixel.MapCode.Value = SiteVars.MapCode[site];
}
else
{
pixel.MapCode.Value = 0;
}
outputRaster.WriteBufferPixel();
}
}
}
//---------------------------------------------------------------------
public override void Run()
{
//if keyword == maxage
foreach (ISpecies species in selectedSpecies)
{
IOutputRaster <AgePixel> map = CreateMap(species.Name);
using (map) {
AgePixel pixel = new AgePixel();
foreach (Site site in modelCore.Landscape.AllSites)
{
if (site.IsActive)
{
pixel.Band0 = AgeCohort.Util.GetMaxAge(cohorts[site][species]);
}
else
{
pixel.Band0 = 0;
}
map.WritePixel(pixel);
}
}
}
WriteMapWithMaxAgeAmongAll();
}
//---------------------------------------------------------------------
public Band(Gdal.RasterBand band,
IOutputRaster raster)
: base(band)
{
this.raster = raster;
toBytes = new ToBytesMethod <T>(new U().ToBytes);
}
//---------------------------------------------------------------------
protected void WriteMapsForYear(string pathTemplate,
int yearInTimestep,
GetSpeciesValueAt getSpeciesValueAt)
{
int successionTimestep = seedingData.time_step;
int firstYearInTimestep = Model.Core.CurrentTime - successionTimestep + 1;
int year = firstYearInTimestep + yearInTimestep;
foreach (ISpecies species in Model.Core.Species)
{
string path = MapPaths.ReplaceTemplateVars(pathTemplate, year, species.Name);
int s = species.Index;
using (IOutputRaster <IntPixel> outputRaster = Model.Core.CreateRaster <IntPixel>(path, Model.Core.Landscape.Dimensions))
{
IntPixel pixel = outputRaster.BufferPixel;
foreach (Site site in Model.Core.Landscape.AllSites)
{
int x = site.Location.Column - 1;
int y = site.Location.Row - 1;
pixel.Band0.Value = getSpeciesValueAt(x, y, s, yearInTimestep);
outputRaster.WriteBufferPixel();
}
}
}
}
//---------------------------------------------------------------------
private void WritePoolMap(string poolName,
ISiteVar <Pool> poolSiteVar)
{
string path = PoolMapNames.ReplaceTemplateVars(poolMapNameTemplate,
poolName,
PlugIn.ModelCore.CurrentTime);
if (poolSiteVar != null)
{
PlugIn.ModelCore.UI.WriteLine(" Writing {0} biomass map to {1} ...", poolName, path);
using (IOutputRaster <IntPixel> outputRaster = modelCore.CreateRaster <IntPixel>(path, modelCore.Landscape.Dimensions))
{
IntPixel pixel = outputRaster.BufferPixel;
foreach (Site site in PlugIn.ModelCore.Landscape.AllSites)
{
if (site.IsActive)
{
pixel.MapCode.Value = (int)((float)poolSiteVar[site].Mass);
}
else
{
pixel.MapCode.Value = 0;
}
outputRaster.WriteBufferPixel();
}
}
}
}
//---------------------------------------------------------------------
/// <summary>
/// Runs the component for a particular timestep.
/// </summary>
/// <param name="currentTime">
/// The current model timestep.
/// </param>
public void Run(int currentTime)
{
foreach (ISpecies species in selectedSpecies)
{
IOutputRaster <AgePixel> map = CreateMap(species.Name, currentTime);
using (map) {
AgePixel pixel = new AgePixel();
foreach (Site site in Model.Landscape.AllSites)
{
if (site.IsActive)
{
pixel.Band0 = AgeCohort.Util.GetMaxAge(cohorts[site][species]);
}
else
{
pixel.Band0 = 0;
}
map.WritePixel(pixel);
}
}
}
WriteMapWithMaxAgeAmongAll(currentTime);
nextTimeToRun += timestep;
}
//---------------------------------------------------------------------
/// <summary>
/// Runs the component for a particular timestep.
/// </summary>
/// <param name="currentTime">
/// The current model timestep.
/// </param>
public void Run(int currentTime)
{
foreach (IMapDefinition map in mapDefs)
{
IForestType[] forestTypes = map.ForestTypes;
IOutputRaster <ClassPixel> newmap = CreateMap(map.Name, currentTime);
string path = newmap.Path;
using (newmap) {
ClassPixel pixel = new ClassPixel();
foreach (Site site in Model.Landscape.AllSites)
{
if (site.IsActive)
{
pixel.Band0 = CalcForestType(cohorts[site],
forestTypes);
}
else
{
pixel.Band0 = 0;
}
newmap.WritePixel(pixel);
}
}
//Erdas74TrailerFile.Write(path, map.ForestTypes);
}
nextTimeToRun += timestep;
}
//---------------------------------------------------------------------
private void WriteSpeciesMaps()
{
foreach (ISpecies species in selectedSpecies)
{
string path = MakeSpeciesMapName(species.Name);
PlugIn.ModelCore.UI.WriteLine(" Writing {0} biomass map to {1} ...", species.Name, path);
using (IOutputRaster <IntPixel> outputRaster = modelCore.CreateRaster <IntPixel>(path, modelCore.Landscape.Dimensions))
{
IntPixel pixel = outputRaster.BufferPixel;
foreach (Site site in PlugIn.ModelCore.Landscape.AllSites)
{
if (site.IsActive)
{
pixel.MapCode.Value = (int)Math.Round((double)ComputeSpeciesBiomass(SiteVars.Cohorts[site][species]));
}
else
{
pixel.MapCode.Value = 0;
}
outputRaster.WriteBufferPixel();
}
}
}
}
//---------------------------------------------------------------------
/// <summary>
/// Writes an output map of prescriptions that harvested each active site.
/// </summary>
private void WritePrescriptionMap(int timestep)
{
string path = MapNames.ReplaceTemplateVars(nameTemplate, timestep);
ModelCore.UI.WriteLine(" Writing prescription map to {0} ...", path);
using (IOutputRaster <ShortPixel> outputRaster = modelCore.CreateRaster <ShortPixel>(path, modelCore.Landscape.Dimensions))
{
ShortPixel pixel = outputRaster.BufferPixel;
foreach (Site site in modelCore.Landscape.AllSites)
{
if (site.IsActive)
{
Prescription prescription = HarvestMgmtLib.SiteVars.Prescription[site];
if (prescription == null)
{
pixel.MapCode.Value = 1;
}
else
{
pixel.MapCode.Value = (short)(prescription.Number + 1);
}
}
else
{
// Inactive site
pixel.MapCode.Value = 0;
}
outputRaster.WriteBufferPixel();
}
}
}
//---------------------------------------------------------------------
/// <summary>
/// Runs the component for a particular timestep.
/// </summary>
/// <param name="currentTime">
/// The current model timestep.
/// </param>
public override void Run()
{
foreach (IMapDefinition map in mapDefs)
{
IForestType[] forestTypes = map.ForestTypes;
IOutputRaster <ClassPixel> newmap = CreateMap(map.Name);
string path = newmap.Path;
using (newmap) {
ClassPixel pixel = new ClassPixel();
foreach (Site site in modelCore.Landscape.AllSites)
{
if (site.IsActive)
{
pixel.Band0 = CalcForestType(site, forestTypes);
}
else
{
pixel.Band0 = 0;
}
newmap.WritePixel(pixel);
}
}
//Erdas74TrailerFile.Write(path, map.ForestTypes);
}
}
//---------------------------------------------------------------------
/// <summary>
/// Runs the component for a particular timestep.
/// </summary>
/// <param name="currentTime">
/// The current model timestep.
/// </param>
public override void Run()
{
foreach (IMapDefinition map in mapDefs)
{
List <IForestType> forestTypes = map.ForestTypes;
string path = MapFileNames.ReplaceTemplateVars(mapNameTemplate, map.Name, modelCore.CurrentTime);
modelCore.UI.WriteLine(" Writing Biomass Reclass map to {0} ...", path);
using (IOutputRaster <BytePixel> outputRaster = modelCore.CreateRaster <BytePixel>(path, modelCore.Landscape.Dimensions))
{
BytePixel pixel = outputRaster.BufferPixel;
foreach (Site site in modelCore.Landscape.AllSites)
{
if (site.IsActive)
{
pixel.MapCode.Value = CalcForestType(forestTypes, site);
}
else
{
pixel.MapCode.Value = 0;
}
outputRaster.WriteBufferPixel();
}
}
}
}
//---------------------------------------------------------------------
/// <summary>
/// Writes an output map of prescriptions that harvested each active
/// site.
/// </summary>
/// <param name="timestep">
/// Timestep to use in the map's name.
/// </param>
public void WriteMap(int timestep)
{
string path = MapNames.ReplaceTemplateVars(nameTemplate, timestep);
using (IOutputRaster <ShortPixel> outputRaster = Model.Core.CreateRaster <ShortPixel>(path, Model.Core.Landscape.Dimensions))
{
ShortPixel pixel = outputRaster.BufferPixel;
foreach (Site site in Model.Core.Landscape.AllSites)
{
if (site.IsActive)
{
Prescription prescription = SiteVars.Prescription[site];
if (prescription == null)
{
pixel.MapCode.Value = 1;
}
else
{
pixel.MapCode.Value = (short)(prescription.Number + 1);
}
}
else
{
// Inactive site
pixel.MapCode.Value = 0;
}
outputRaster.WriteBufferPixel();
}
}
}
//---------------------------------------------------------------------
public override void Run()
{
//if keyword == maxage
foreach (ISpecies species in selectedSpecies)
{
string path = MapNameTemplates.ReplaceTemplateVars(mapNameTemplate, species.Name, modelCore.CurrentTime);
modelCore.UI.WriteLine(" Writing maximum age map for {0} to {1} ...", species.Name, path);
using (IOutputRaster <ShortPixel> outputRaster = modelCore.CreateRaster <ShortPixel>(path, modelCore.Landscape.Dimensions))
{
ShortPixel pixel = outputRaster.BufferPixel;
foreach (Site site in modelCore.Landscape.AllSites)
{
if (site.IsActive)
{
pixel.MapCode.Value = SiteVars.GetMaxAge(species, (ActiveSite)site);
}
else
{
pixel.MapCode.Value = 0;
}
outputRaster.WriteBufferPixel();
}
}
}
WriteMapWithMaxAgeAmongAll();
}
//---------------------------------------------------------------------
private void WriteSpeciesMaps()
{
foreach (ISpecies species in selectedSpecies)
{
foreach (AgeClass ageclass in ageClasses[species.Name])
{
string path = MakeSpeciesMapName(species.Name, ageclass.Name);
ModelCore.UI.WriteLine(" Writing {0} and {1} map to {2} ...", species.Name, ageclass.Name, path);
using (IOutputRaster <IntPixel> outputRaster = modelCore.CreateRaster <IntPixel>(path, modelCore.Landscape.Dimensions))
{
IntPixel pixel = outputRaster.BufferPixel;
foreach (Site site in modelCore.Landscape.AllSites)
{
if (site.IsActive)
{
pixel.MapCode.Value = (int)((float)Util.ComputeAgeClassBiomass(site, species, ageclass));
}
else
{
pixel.MapCode.Value = 0;
}
outputRaster.WriteBufferPixel();
}
}
}
}
}
public void Create()
{
IOutputRaster <Erdas74Pixel8> raster =
lib.Create <Erdas74Pixel8>(Data.MakeOutputPath("temp.gis"),
new Dimensions(20, 10),
null);
raster.Close();
}
//---------------------------------------------------------------------
///<summary>
/// Run the plug-in at a particular timestep.
///</summary>
public override void Run()
{
ModelCore.UI.WriteLine("Processing landscape for wind events ...");
SiteVars.Event.SiteValues = null;
SiteVars.Severity.ActiveSiteValues = 0;
int eventCount = 0;
foreach (ActiveSite site in PlugIn.ModelCore.Landscape)
{
Event windEvent = Event.Initiate(site, Timestep);
if (windEvent != null)
{
LogEvent(PlugIn.ModelCore.CurrentTime, windEvent);
eventCount++;
summaryEventCount++;
}
}
//ModelCore.UI.WriteLine(" Wind events: {0}", eventCount);
// Write wind severity map
string path = MapNames.ReplaceTemplateVars(mapNameTemplate, PlugIn.modelCore.CurrentTime);
Dimensions dimensions = new Dimensions(modelCore.Landscape.Rows, modelCore.Landscape.Columns);
using (IOutputRaster <BytePixel> outputRaster = modelCore.CreateRaster <BytePixel>(path, dimensions))
{
BytePixel pixel = outputRaster.BufferPixel;
foreach (Site site in PlugIn.ModelCore.Landscape.AllSites)
{
if (site.IsActive)
{
if (SiteVars.Disturbed[site])
{
pixel.MapCode.Value = (byte)(SiteVars.Severity[site] + 1);
}
else
{
pixel.MapCode.Value = 1;
}
}
else
{
// Inactive site
pixel.MapCode.Value = 0;
}
outputRaster.WriteBufferPixel();
}
}
WriteSummaryLog(PlugIn.modelCore.CurrentTime);
summaryTotalSites = 0;
summaryEventCount = 0;
}
//---------------------------------------------------------------------
/// <summary>
/// Writes an output map of biomass removed from each active site.
/// </summary>
/// <param name="timestep">
/// Timestep to use in the map's name.
/// </param>
public void WriteMap(int timestep)
{
string path = MapNames.ReplaceTemplateVars(nameTemplate, timestep);
PlugIn.ModelCore.UI.WriteLine(" Writing biomass-removed map to {0} ...", path);
using (IOutputRaster <IntPixel> outputRaster = PlugIn.ModelCore.CreateRaster <IntPixel>(path, PlugIn.ModelCore.Landscape.Dimensions))
{
IntPixel pixel = outputRaster.BufferPixel;
foreach (Site site in PlugIn.ModelCore.Landscape.AllSites)
{
pixel.MapCode.Value = (int)Math.Round(SiteVars.BiomassRemoved[site]);
outputRaster.WriteBufferPixel();
}
}
}
//---------------------------------------------------------------------
private void WriteMap(string speciesName,
MaxAgeCalculator maxAgeCalculator)
{
IOutputRaster <AgePixel> map = CreateMap(speciesName);
using (map) {
AgePixel pixel = new AgePixel();
Location location_1_1 = new Location(1, 1);
foreach (Site site in modelCore.Landscape.AllSites)
{
ushort age;
if (site.IsActive)
{
ActiveSite activeSite = (ActiveSite)site;
if (activeSite.SharesData)
{
Location blockLocation = activeSite.BroadScaleLocation;
if (activeSite.LocationInBlock == location_1_1)
{
age = maxAgeCalculator.ComputeMaxAge(activeSite);
ageBuffer[blockLocation.Column] = age;
}
else
{
// already computed age for the block
age = ageBuffer[blockLocation.Column];
}
}
else
{
age = maxAgeCalculator.ComputeMaxAge(activeSite);
}
}
else
{
// inactive site
age = 0;
}
pixel.Band0 = age;
map.WritePixel(pixel);
}
}
}
//---------------------------------------------------------------------
public static IOutputRaster <T> Create <T>(string path,
Dimensions dimensions,
IMetadata metadata)
where T : IPixel, new()
{
try {
string dir = System.IO.Path.GetDirectoryName(path);
if (dir.Length > 0)
{
Directory.EnsureExists(dir);
}
IOutputRaster <T> raster = driver.Create <T>(path, dimensions, metadata);
return(raster);
}
catch (System.IO.IOException exc) {
string mesg = string.Format("Error opening map \"{0}\"", path);
throw new MultiLineException(mesg, exc);
}
}
//---------------------------------------------------------------------
private void WriteMapWithMaxAgeAmongAll(int currentTime)
{
// Maximum age map for all species
IOutputRaster <AgePixel> map = CreateMap("all", currentTime);
using (map) {
AgePixel pixel = new AgePixel();
foreach (Site site in Model.Landscape.AllSites)
{
if (site.IsActive)
{
pixel.Band0 = AgeCohort.Util.GetMaxAge(cohorts[site]);
}
else
{
pixel.Band0 = 0;
}
map.WritePixel(pixel);
}
}
}
//---------------------------------------------------------------------
private void WriteMapWithMaxAgeAmongAll()
{
// Maximum age map for all species
string path = MapNameTemplates.ReplaceTemplateVars(mapNameTemplate, "AllSppMaxAge", modelCore.CurrentTime);
modelCore.UI.WriteLine(" Writing maximum age map for all species to {0} ...", path);
using (IOutputRaster <ShortPixel> outputRaster = modelCore.CreateRaster <ShortPixel>(path, modelCore.Landscape.Dimensions))
{
ShortPixel pixel = outputRaster.BufferPixel;
foreach (Site site in modelCore.Landscape.AllSites)
{
if (site.IsActive)
{
pixel.MapCode.Value = SiteVars.GetMaxAge((ActiveSite)site);
}
else
{
pixel.MapCode.Value = 0;
}
outputRaster.WriteBufferPixel();
}
}
}
public OutputMapSpecies(ISiteVar <int> values, ISpecies species, string MapNameTemplate)
{
FileName = FileNames.ReplaceTemplateVars(MapNameTemplate, species.Name, PlugIn.ModelCore.CurrentTime);
Console.WriteLine(" Writing {0} map to {1} ...", species.Name, FileName);
using (IOutputRaster <IntPixel> outputRaster = PlugIn.ModelCore.CreateRaster <IntPixel>(FileName, PlugIn.ModelCore.Landscape.Dimensions))
{
IntPixel pixel = outputRaster.BufferPixel;
foreach (Site site in PlugIn.ModelCore.Landscape.AllSites)
{
if (site.IsActive)
{
pixel.MapCode.Value = (int)values[site];
}
else
{
pixel.MapCode.Value = 0;
}
outputRaster.WriteBufferPixel();
}
}
}
//---------------------------------------------------------------------
private void WriteMapForAllSpecies()
{
// Biomass map for all species
string path = MakeSpeciesMapName("TotalBiomass");
PlugIn.ModelCore.UI.WriteLine(" Writing total biomass map to {0} ...", path);
using (IOutputRaster <IntPixel> outputRaster = modelCore.CreateRaster <IntPixel>(path, modelCore.Landscape.Dimensions))
{
IntPixel pixel = outputRaster.BufferPixel;
foreach (Site site in PlugIn.ModelCore.Landscape.AllSites)
{
if (site.IsActive)
{
pixel.MapCode.Value = (int)Math.Round((double)ComputeTotalBiomass(SiteVars.Cohorts[site]));
}
else
{
pixel.MapCode.Value = 0;
}
outputRaster.WriteBufferPixel();
}
}
}
//---------------------------------------------------------------------
public static void WriteLogFile(int CurrentTime)
{
double[] avgLiveB = new double[PlugIn.ModelCore.Ecoregions.Count];
double[] avgAG_NPP = new double[PlugIn.ModelCore.Ecoregions.Count];
double[] avgDefoliation = new double[PlugIn.ModelCore.Ecoregions.Count];
double[] avgLitterB = new double[PlugIn.ModelCore.Ecoregions.Count];
foreach (IEcoregion ecoregion in PlugIn.ModelCore.Ecoregions)
{
avgLiveB[ecoregion.Index] = 0.0;
avgAG_NPP[ecoregion.Index] = 0.0;
avgDefoliation[ecoregion.Index] = 0.0;
avgLitterB[ecoregion.Index] = 0.0;
}
foreach (ActiveSite site in PlugIn.ModelCore.Landscape)
{
IEcoregion ecoregion = PlugIn.ModelCore.Ecoregion[site];
int youngBiomass; //ignored
avgLiveB[ecoregion.Index] += Cohorts.ComputeBiomass(SiteVars.Cohorts[site], out youngBiomass);
avgAG_NPP[ecoregion.Index] += SiteVars.AGNPP[site];
avgDefoliation[ecoregion.Index] += SiteVars.Defoliation[site];
avgLitterB[ecoregion.Index] += SiteVars.Litter[site].Mass;
}
foreach (IEcoregion ecoregion in PlugIn.ModelCore.Ecoregions)
{
if (EcoregionData.ActiveSiteCount[ecoregion] > 0)
{
PlugIn.summaryLog.Clear();
SummaryLog sl = new SummaryLog();
sl.Time = CurrentTime;
sl.EcoName = ecoregion.Name;
sl.ActiveCount = EcoregionData.ActiveSiteCount[ecoregion];
sl.AvgAG_NPP = (avgAG_NPP[ecoregion.Index] / (double)EcoregionData.ActiveSiteCount[ecoregion]);
sl.AvgDefoliation = (avgDefoliation[ecoregion.Index] / (double)EcoregionData.ActiveSiteCount[ecoregion]);
sl.AvgLitterB = (avgLitterB[ecoregion.Index] / (double)EcoregionData.ActiveSiteCount[ecoregion]);
sl.AvgLiveB = (avgLiveB[ecoregion.Index] / (double)EcoregionData.ActiveSiteCount[ecoregion]);
PlugIn.summaryLog.AddObject(sl);
PlugIn.summaryLog.WriteToFile();
}
}
string path = MapNames.ReplaceTemplateVars(@"biomass-succession\biomass-anpp-{timestep}.img", PlugIn.ModelCore.CurrentTime);
using (IOutputRaster <IntPixel> outputRaster = PlugIn.ModelCore.CreateRaster <IntPixel>(path, PlugIn.ModelCore.Landscape.Dimensions))
{
IntPixel pixel = outputRaster.BufferPixel;
foreach (Site site in PlugIn.ModelCore.Landscape.AllSites)
{
if (site.IsActive)
{
pixel.MapCode.Value = (int)SiteVars.AGNPP[site];
}
else
{
// Inactive site
pixel.MapCode.Value = 0;
}
outputRaster.WriteBufferPixel();
}
}
}
public static void WriteMaps()
{
string pathH2O = MapNames.ReplaceTemplateVars(@"NECN\Annual-water-budget-{timestep}.img", PlugIn.ModelCore.CurrentTime);
using (IOutputRaster <IntPixel> outputRaster = PlugIn.ModelCore.CreateRaster <IntPixel>(pathH2O, PlugIn.ModelCore.Landscape.Dimensions))
{
IntPixel pixel = outputRaster.BufferPixel;
foreach (Site site in PlugIn.ModelCore.Landscape.AllSites)
{
if (site.IsActive)
{
pixel.MapCode.Value = (int)((SiteVars.AnnualPPT_AET[site]));
}
else
{
// Inactive site
pixel.MapCode.Value = 0;
}
outputRaster.WriteBufferPixel();
}
}
//AMK: Trying out directly writing maps
string pathANPP = MapNames.ReplaceTemplateVars(@"NECN\AG_NPP-{timestep}.img", PlugIn.ModelCore.CurrentTime);
using (IOutputRaster <IntPixel> outputRaster = PlugIn.ModelCore.CreateRaster <IntPixel>(pathANPP, PlugIn.ModelCore.Landscape.Dimensions))
{
IntPixel pixel = outputRaster.BufferPixel;
foreach (Site site in PlugIn.ModelCore.Landscape.AllSites)
{
if (site.IsActive)
{
pixel.MapCode.Value = (int)((SiteVars.AGNPPcarbon[site]));
}
else
{
// Inactive site
pixel.MapCode.Value = 0;
}
outputRaster.WriteBufferPixel();
}
}
string path = MapNames.ReplaceTemplateVars(@"NECN\SOMTC-{timestep}.img", PlugIn.ModelCore.CurrentTime);
using (IOutputRaster <IntPixel> outputRaster = PlugIn.ModelCore.CreateRaster <IntPixel>(path, PlugIn.ModelCore.Landscape.Dimensions))
{
IntPixel pixel = outputRaster.BufferPixel;
foreach (Site site in PlugIn.ModelCore.Landscape.AllSites)
{
if (site.IsActive)
{
pixel.MapCode.Value = (int)((SiteVars.SOM1surface[site].Carbon + SiteVars.SOM1soil[site].Carbon + SiteVars.SOM2[site].Carbon + SiteVars.SOM3[site].Carbon));
}
else
{
// Inactive site
pixel.MapCode.Value = 0;
}
outputRaster.WriteBufferPixel();
}
}
string path2 = MapNames.ReplaceTemplateVars(@"NECN\SoilN-{timestep}.img", PlugIn.ModelCore.CurrentTime);
using (IOutputRaster <ShortPixel> outputRaster = PlugIn.ModelCore.CreateRaster <ShortPixel>(path2, PlugIn.ModelCore.Landscape.Dimensions))
{
ShortPixel pixel = outputRaster.BufferPixel;
foreach (Site site in PlugIn.ModelCore.Landscape.AllSites)
{
if (site.IsActive)
{
pixel.MapCode.Value = (short)(SiteVars.MineralN[site]);
}
else
{
// Inactive site
pixel.MapCode.Value = 0;
}
outputRaster.WriteBufferPixel();
}
}
//}
string path4 = MapNames.ReplaceTemplateVars(@"NECN\ANEE-{timestep}.img", PlugIn.ModelCore.CurrentTime);
using (IOutputRaster <ShortPixel> outputRaster = PlugIn.ModelCore.CreateRaster <ShortPixel>(path4, PlugIn.ModelCore.Landscape.Dimensions))
{
ShortPixel pixel = outputRaster.BufferPixel;
foreach (Site site in PlugIn.ModelCore.Landscape.AllSites)
{
if (site.IsActive)
{
pixel.MapCode.Value = (short)(SiteVars.AnnualNEE[site] + 1000);
}
else
{
// Inactive site
pixel.MapCode.Value = 0;
}
outputRaster.WriteBufferPixel();
}
}
string path5 = MapNames.ReplaceTemplateVars(@"NECN\TotalC-{timestep}.img", PlugIn.ModelCore.CurrentTime);
using (IOutputRaster <IntPixel> outputRaster = PlugIn.ModelCore.CreateRaster <IntPixel>(path5, PlugIn.ModelCore.Landscape.Dimensions))
{
IntPixel pixel = outputRaster.BufferPixel;
foreach (Site site in PlugIn.ModelCore.Landscape.AllSites)
{
if (site.IsActive)
{
pixel.MapCode.Value = (int)(Outputs.GetOrganicCarbon(site) +
SiteVars.CohortLeafC[site] +
SiteVars.CohortFRootC[site] +
SiteVars.CohortWoodC[site] +
SiteVars.CohortCRootC[site] +
SiteVars.SurfaceDeadWood[site].Carbon +
SiteVars.SoilDeadWood[site].Carbon);
}
else
{
// Inactive site
pixel.MapCode.Value = 0;
}
outputRaster.WriteBufferPixel();
}
}
//}
string pathLAI = MapNames.ReplaceTemplateVars(@"NECN\LAI-{timestep}.img", PlugIn.ModelCore.CurrentTime);
using (IOutputRaster <IntPixel> outputRaster = PlugIn.ModelCore.CreateRaster <IntPixel>(pathLAI, PlugIn.ModelCore.Landscape.Dimensions))
{
IntPixel pixel = outputRaster.BufferPixel;
foreach (Site site in PlugIn.ModelCore.Landscape.AllSites)
{
if (site.IsActive)
{
pixel.MapCode.Value = (short)(SiteVars.LAI[site]);
}
else
{
// Inactive site
pixel.MapCode.Value = 0;
}
outputRaster.WriteBufferPixel();
}
}
string pathavailablewater = MapNames.ReplaceTemplateVars(@"NECN\AvailableWater-{timestep}.img", PlugIn.ModelCore.CurrentTime);
using (IOutputRaster <IntPixel> outputRaster = PlugIn.ModelCore.CreateRaster <IntPixel>(pathavailablewater, PlugIn.ModelCore.Landscape.Dimensions))
{
IntPixel pixel = outputRaster.BufferPixel;
foreach (Site site in PlugIn.ModelCore.Landscape.AllSites)
{
if (site.IsActive)
{
pixel.MapCode.Value = (int)((SiteVars.AvailableWater[site]));
}
else
{
// Inactive site
pixel.MapCode.Value = 0;
}
outputRaster.WriteBufferPixel();
}
}
if (PlugIn.Parameters.SmokeModelOutputs)
{
string pathNeedles = MapNames.ReplaceTemplateVars(@"NECN\ConiferNeedleBiomass-{timestep}.img", PlugIn.ModelCore.CurrentTime);
using (IOutputRaster <IntPixel> outputRaster = PlugIn.ModelCore.CreateRaster <IntPixel>(pathNeedles, PlugIn.ModelCore.Landscape.Dimensions))
{
IntPixel pixel = outputRaster.BufferPixel;
foreach (Site site in PlugIn.ModelCore.Landscape.AllSites)
{
if (site.IsActive)
{
pixel.MapCode.Value = (int)(Main.ComputeNeedleBiomass(SiteVars.Cohorts[site]));
}
else
{
// Inactive site
pixel.MapCode.Value = 0;
}
outputRaster.WriteBufferPixel();
}
}
string pathDWD = MapNames.ReplaceTemplateVars(@"NECN\DeadWoodBiomass-{timestep}.img", PlugIn.ModelCore.CurrentTime);
using (IOutputRaster <IntPixel> outputRaster = PlugIn.ModelCore.CreateRaster <IntPixel>(pathDWD, PlugIn.ModelCore.Landscape.Dimensions))
{
IntPixel pixel = outputRaster.BufferPixel;
foreach (Site site in PlugIn.ModelCore.Landscape.AllSites)
{
if (site.IsActive)
{
pixel.MapCode.Value = (int)(SiteVars.SurfaceDeadWood[site].Carbon * 2.0);
}
else
{
// Inactive site
pixel.MapCode.Value = 0;
}
outputRaster.WriteBufferPixel();
}
}
string pathLitter = MapNames.ReplaceTemplateVars(@"NECN\SurfaceLitterBiomass-{timestep}.img", PlugIn.ModelCore.CurrentTime);
using (IOutputRaster <IntPixel> outputRaster = PlugIn.ModelCore.CreateRaster <IntPixel>(pathLitter, PlugIn.ModelCore.Landscape.Dimensions))
{
IntPixel pixel = outputRaster.BufferPixel;
foreach (Site site in PlugIn.ModelCore.Landscape.AllSites)
{
if (site.IsActive)
{
pixel.MapCode.Value = (int)((SiteVars.SurfaceStructural[site].Carbon + SiteVars.SurfaceMetabolic[site].Carbon) * 2.0);
;
}
else
{
// Inactive site
pixel.MapCode.Value = 0;
}
outputRaster.WriteBufferPixel();
}
}
string pathDuff = MapNames.ReplaceTemplateVars(@"NECN\SurfaceDuffBiomass-{timestep}.img", PlugIn.ModelCore.CurrentTime);
using (IOutputRaster <IntPixel> outputRaster = PlugIn.ModelCore.CreateRaster <IntPixel>(pathDuff, PlugIn.ModelCore.Landscape.Dimensions))
{
IntPixel pixel = outputRaster.BufferPixel;
foreach (Site site in PlugIn.ModelCore.Landscape.AllSites)
{
if (site.IsActive)
{
pixel.MapCode.Value = (int)(SiteVars.SOM1surface[site].Carbon * 2.0);
}
else
{
// Inactive site
pixel.MapCode.Value = 0;
}
outputRaster.WriteBufferPixel();
}
}
}
}
internal bool GenerateWindFieldRaster(
string mapNameTemplate, ICore modelCore, ContinentalGrid continentalGrid)
{
this.ContinentalGrid = continentalGrid;
Dimensions dimensions = new Dimensions(modelCore.Landscape.Rows, modelCore.Landscape.Columns);
int columns = modelCore.Landscape.Columns;
int rows = modelCore.Landscape.Rows;
double lowerLeftWindspeed = this.GetWindSpeed(0, 0);
double lowerRightWindSpeed = this.GetWindSpeed(columns, 0);
double upperRightWindSpeed = this.GetWindSpeed(columns, rows);
double upperLeftWindSpeed = this.GetWindSpeed(0, rows);
double maxWS = (new[] { lowerLeftWindspeed, lowerRightWindSpeed, upperRightWindSpeed, upperLeftWindSpeed }).Max();
//double minWS = (new[] { lowerLeftWindspeed, lowerRightWindSpeed, upperRightWindSpeed, upperLeftWindSpeed }).Min();
this.studyAreaImpacts = true;
if (maxWS < HurricaneEvent.MinimumWSforDamage)
{
//PlugIn.ModelCore.UI.WriteLine(" Hurricane Not Sufficient to Cause Damage: MaxWS={0}, HurricaneMinWS={1}", maxWS, MinimumWSforDamage);
this.studyAreaImpacts = false;
//return false;
}
SiteVars.WindSpeed.ActiveSiteValues = 0.0;
foreach (ActiveSite site in PlugIn.ModelCore.Landscape.ActiveSites)
{
currentSite = site;
SiteVars.WindSpeed[currentSite] = this.GetWindSpeed(site.Location.Column, site.Location.Row);
KillSiteCohorts(currentSite);
}
double activeAreaMinWS = 999.0;
double activeAreaMaxWS = 0.0;
string path = MapNames.ReplaceTemplateVars(mapNameTemplate, modelCore.CurrentTime);
IOutputRaster <BytePixel> outputRaster = null;
using (outputRaster = modelCore.CreateRaster <BytePixel>(path, dimensions))
{
BytePixel pixel = outputRaster.BufferPixel;
foreach (Site site in PlugIn.ModelCore.Landscape.AllSites)
{
if (site.IsActive)
{
double windspeed = SiteVars.WindSpeed[site];
pixel.MapCode.Value = (byte)windspeed;
if (windspeed < activeAreaMinWS)
{
activeAreaMinWS = windspeed;
}
if (windspeed > activeAreaMaxWS)
{
activeAreaMaxWS = windspeed;
}
}
else
{
// Inactive site
pixel.MapCode.Value = (byte)0;
}
outputRaster.WriteBufferPixel();
}
}
this.StudyAreaMinWindspeed = activeAreaMinWS;
this.StudyAreaMaxWindspeed = activeAreaMaxWS;
//PlugIn.ModelCore.UI.WriteLine(" Hurricane Caused Damage: AreaMaxWS={0}, AreaMinWS={1}", activeAreaMaxWS, activeAreaMinWS);
return(true);
}
//---------------------------------------------------------------------
/// <summary>
/// Runs the component for a particular timestep.
/// </summary>
/// <param name="currentTime">
/// The current model timestep.
/// </param>
public override void Run()
{
if (SiteVars.TimeOfLastFire == null)
{
SiteVars.ReInitialize();
}
SiteVars.FuelType.ActiveSiteValues = 0;
SiteVars.DecidFuelType.ActiveSiteValues = 0;
modelCore.UI.WriteLine(" Calculating the Dynamic Fuel Type for all active cells...");
foreach (ActiveSite site in modelCore.Landscape)
{
CalcFuelType(site, fuelTypes, disturbanceTypes);
SiteVars.PercentDeadFir[site] = CalcPercentDeadFir(site);
}
string path = MapNames.ReplaceTemplateVars(mapNameTemplate, modelCore.CurrentTime);
modelCore.UI.WriteLine(" Writing Fuel map to {0} ...", path);
using (IOutputRaster <BytePixel> outputRaster = modelCore.CreateRaster <BytePixel>(path, modelCore.Landscape.Dimensions))
{
BytePixel pixel = outputRaster.BufferPixel;
foreach (Site site in modelCore.Landscape.AllSites)
{
if (site.IsActive)
{
pixel.MapCode.Value = (byte)((int)SiteVars.FuelType[site] + 1);
}
else
{
pixel.MapCode.Value = 0;
}
outputRaster.WriteBufferPixel();
}
}
string conpath = MapNames.ReplaceTemplateVars(pctConiferMapNameTemplate, modelCore.CurrentTime);
modelCore.UI.WriteLine(" Writing % Conifer map to {0} ...", conpath);
using (IOutputRaster <BytePixel> outputRaster = modelCore.CreateRaster <BytePixel>(conpath, modelCore.Landscape.Dimensions))
{
BytePixel pixel = outputRaster.BufferPixel;
foreach (Site site in modelCore.Landscape.AllSites)
{
if (site.IsActive)
{
pixel.MapCode.Value = (byte)((int)SiteVars.PercentConifer[site]);
}
else
{
pixel.MapCode.Value = 0;
}
outputRaster.WriteBufferPixel();
}
}
string firpath = MapNames.ReplaceTemplateVars(pctDeadFirMapNameTemplate, modelCore.CurrentTime);
modelCore.UI.WriteLine(" Writing % Dead Fir map to {0} ...", firpath);
using (IOutputRaster <BytePixel> outputRaster = modelCore.CreateRaster <BytePixel>(firpath, modelCore.Landscape.Dimensions))
{
BytePixel pixel = outputRaster.BufferPixel;
foreach (Site site in modelCore.Landscape.AllSites)
{
if (site.IsActive)
{
pixel.MapCode.Value = (byte)((int)SiteVars.PercentDeadFir[site]);
}
else
{
pixel.MapCode.Value = 0;
}
outputRaster.WriteBufferPixel();
}
}
}
public static void WriteMaps()
{
//if (PlugIn.SoilCarbonMapNames != null)// && (PlugIn.ModelCore.CurrentTime % SoilCarbonMapFrequency) == 0)
//{
string pathH2O = MapNames.ReplaceTemplateVars(@"NECN_Hydro\Annual-water-budget-{timestep}.img", PlugIn.ModelCore.CurrentTime);
using (IOutputRaster <IntPixel> outputRaster = PlugIn.ModelCore.CreateRaster <IntPixel>(pathH2O, PlugIn.ModelCore.Landscape.Dimensions))
{
IntPixel pixel = outputRaster.BufferPixel;
foreach (Site site in PlugIn.ModelCore.Landscape.AllSites)
{
if (site.IsActive)
{
//This is incorrect right now. Should be ppt-AET, not SOMTC calc
//pixel.MapCode.Value = (int)((SiteVars.SOM1surface[site].Carbon + SiteVars.SOM1soil[site].Carbon + SiteVars.SOM2[site].Carbon + SiteVars.SOM3[site].Carbon));
pixel.MapCode.Value = (int)((SiteVars.AnnualPPT_AET[site]));
}
else
{
// Inactive site
pixel.MapCode.Value = 0;
}
outputRaster.WriteBufferPixel();
}
//}
}
//AMK: Trying out directly writing maps
string pathANPP = MapNames.ReplaceTemplateVars(@"NECN_Hydro\AG_NPP-{timestep}.img", PlugIn.ModelCore.CurrentTime);
using (IOutputRaster <IntPixel> outputRaster = PlugIn.ModelCore.CreateRaster <IntPixel>(pathANPP, PlugIn.ModelCore.Landscape.Dimensions))
{
IntPixel pixel = outputRaster.BufferPixel;
foreach (Site site in PlugIn.ModelCore.Landscape.AllSites)
{
if (site.IsActive)
{
pixel.MapCode.Value = (int)((SiteVars.AGNPPcarbon[site]));
}
else
{
// Inactive site
pixel.MapCode.Value = 0;
}
outputRaster.WriteBufferPixel();
}
}
//if (PlugIn.SoilCarbonMapNames != null)
// {
string path = MapNames.ReplaceTemplateVars(@"NECN_Hydro\SOMTC-{timestep}.img", PlugIn.ModelCore.CurrentTime);
using (IOutputRaster <IntPixel> outputRaster = PlugIn.ModelCore.CreateRaster <IntPixel>(path, PlugIn.ModelCore.Landscape.Dimensions))
{
IntPixel pixel = outputRaster.BufferPixel;
foreach (Site site in PlugIn.ModelCore.Landscape.AllSites)
{
if (site.IsActive)
{
pixel.MapCode.Value = (int)((SiteVars.SOM1surface[site].Carbon + SiteVars.SOM1soil[site].Carbon + SiteVars.SOM2[site].Carbon + SiteVars.SOM3[site].Carbon));
}
else
{
// Inactive site
pixel.MapCode.Value = 0;
}
outputRaster.WriteBufferPixel();
}
}
//}
//if (PlugIn.SoilNitrogenMapNames != null)
//{
string path2 = MapNames.ReplaceTemplateVars(@"NECN_Hydro\SoilN-{timestep}.img", PlugIn.ModelCore.CurrentTime);
using (IOutputRaster <ShortPixel> outputRaster = PlugIn.ModelCore.CreateRaster <ShortPixel>(path2, PlugIn.ModelCore.Landscape.Dimensions))
{
ShortPixel pixel = outputRaster.BufferPixel;
foreach (Site site in PlugIn.ModelCore.Landscape.AllSites)
{
if (site.IsActive)
{
pixel.MapCode.Value = (short)(SiteVars.MineralN[site]);
}
else
{
// Inactive site
pixel.MapCode.Value = 0;
}
outputRaster.WriteBufferPixel();
}
}
//}
string path4 = MapNames.ReplaceTemplateVars(@"NECN_Hydro\ANEE-{timestep}.img", PlugIn.ModelCore.CurrentTime);
using (IOutputRaster <ShortPixel> outputRaster = PlugIn.ModelCore.CreateRaster <ShortPixel>(path4, PlugIn.ModelCore.Landscape.Dimensions))
{
ShortPixel pixel = outputRaster.BufferPixel;
foreach (Site site in PlugIn.ModelCore.Landscape.AllSites)
{
if (site.IsActive)
{
pixel.MapCode.Value = (short)(SiteVars.AnnualNEE[site] + 1000);
}
else
{
// Inactive site
pixel.MapCode.Value = 0;
}
outputRaster.WriteBufferPixel();
}
}
//}
//if (PlugIn.TotalCMapNames != null)
//{
string path5 = MapNames.ReplaceTemplateVars(@"NECN_Hydro\TotalC-{timestep}.img", PlugIn.ModelCore.CurrentTime);
using (IOutputRaster <IntPixel> outputRaster = PlugIn.ModelCore.CreateRaster <IntPixel>(path5, PlugIn.ModelCore.Landscape.Dimensions))
{
IntPixel pixel = outputRaster.BufferPixel;
foreach (Site site in PlugIn.ModelCore.Landscape.AllSites)
{
if (site.IsActive)
{
pixel.MapCode.Value = (int)(Outputs.GetOrganicCarbon(site) +
SiteVars.CohortLeafC[site] +
SiteVars.CohortFRootC[site] +
SiteVars.CohortWoodC[site] +
SiteVars.CohortCRootC[site] +
SiteVars.SurfaceDeadWood[site].Carbon +
SiteVars.SoilDeadWood[site].Carbon);
}
else
{
// Inactive site
pixel.MapCode.Value = 0;
}
outputRaster.WriteBufferPixel();
}
}
//}
string pathLAI = MapNames.ReplaceTemplateVars(@"NECN_Hydro\LAI-{timestep}.img", PlugIn.ModelCore.CurrentTime);
using (IOutputRaster <IntPixel> outputRaster = PlugIn.ModelCore.CreateRaster <IntPixel>(pathLAI, PlugIn.ModelCore.Landscape.Dimensions))
{
IntPixel pixel = outputRaster.BufferPixel;
foreach (Site site in PlugIn.ModelCore.Landscape.AllSites)
{
if (site.IsActive)
{
pixel.MapCode.Value = (short)(SiteVars.LAI[site]);
}
else
{
// Inactive site
pixel.MapCode.Value = 0;
}
outputRaster.WriteBufferPixel();
}
}
string pathavailablewater = MapNames.ReplaceTemplateVars(@"NECN_Hydro\AvailableWater-{timestep}.img", PlugIn.ModelCore.CurrentTime);
using (IOutputRaster <IntPixel> outputRaster = PlugIn.ModelCore.CreateRaster <IntPixel>(pathavailablewater, PlugIn.ModelCore.Landscape.Dimensions))
{
IntPixel pixel = outputRaster.BufferPixel;
foreach (Site site in PlugIn.ModelCore.Landscape.AllSites)
{
if (site.IsActive)
{
pixel.MapCode.Value = (int)((SiteVars.AvailableWater[site]));
}
else
{
// Inactive site
pixel.MapCode.Value = 0;
}
outputRaster.WriteBufferPixel();
}
}
//if (PlugIn.ShadeClassMapNames != null)// && (PlugIn.ModelCore.CurrentTime % LAIMapFrequency) == 0)
//{
// string path5 = MapNames.ReplaceTemplateVars(PlugIn.ShadeClassMapNames, PlugIn.ModelCore.CurrentTime);
// using (IOutputRaster<IntPixel> outputRaster = PlugIn.ModelCore.CreateRaster<IntPixel>(path5, PlugIn.ModelCore.Landscape.Dimensions))
// {
// IntPixel pixel = outputRaster.BufferPixel;
// foreach (Site site in PlugIn.ModelCore.Landscape.AllSites)
// {
// if (site.IsActive)
// {
// pixel.MapCode.Value = (short)(SiteVars.ShadeClass[site]); //Shade Class SiteCar doesn't exist. Just a placeholder
// }
// else
// {
// // Inactive site
// pixel.MapCode.Value = 0;
// }
// outputRaster.WriteBufferPixel();
// }
// }
//}
}
//---------------------------------------------------------------------
///<summary>
/// Run Biomass Insects extension at a particular timestep.
///</summary>
public override void Run()
{
running = true;
PlugIn.ModelCore.UI.WriteLine(" Processing landscape for Biomass Insect events ...");
SiteVars.SiteDefoliation.ActiveSiteValues = 0;
foreach (IInsect insect in manyInsect)
{
//SiteVars.BiomassRemoved.ActiveSiteValues = 0;
//SiteVars.InitialOutbreakProb.ActiveSiteValues = 0.0;
if (insect.MortalityYear == PlugIn.ModelCore.CurrentTime)
{
Outbreak.Mortality(insect);
}
if (insect.MortalityYear != PlugIn.ModelCore.CurrentTime)
{
insect.LastBioRemoved = 0;
}
// Copy the data from current to last
foreach (ActiveSite site in PlugIn.ModelCore.Landscape)
{
double thisYearDefol = insect.ThisYearDefoliation[site];
insect.LastYearDefoliation[site] = thisYearDefol;
SiteVars.SiteDefoliation[site] += (int)Math.Round(thisYearDefol * 100);
if (thisYearDefol > 0)
{
SiteVars.TimeOfLastEvent[site] = PlugIn.ModelCore.CurrentTime - 1;
SiteVars.InsectName[site] = insect.Name;
}
}
insect.ThisYearDefoliation.ActiveSiteValues = 0.0;
insect.ActiveOutbreak = false;
insect.SingleOutbreakYear = false;
//PlugIn.ModelCore.NormalDistribution.Mu = 0.0;
//PlugIn.ModelCore.NormalDistribution.Sigma = 1.0;
//double randomNum = PlugIn.ModelCore.NormalDistribution.NextDouble();
//randomNum = PlugIn.ModelCore.NormalDistribution.NextDouble();
double randomNum = Distribution.GenerateRandomNum(DistributionType.Normal, 0.0, 1.0);
DistributionType distDuration = insect.DurationDistribution;
double randomNumE = Distribution.GenerateRandomNum(distDuration, insect.DurationParameter1, insect.DurationParameter2);
// First, has enough time passed since the last outbreak? This is calculated each year,
// but only used in last year of an outbreak to generate next outbreak characteristics.
double timeBetweenOutbreaks = insect.MeanTimeBetweenOutbreaks + (insect.StdDevTimeBetweenOutbreaks * randomNum);
double duration = System.Math.Round(randomNumE);
if (distDuration == DistributionType.Exponential || distDuration == DistributionType.Normal)
{
duration = System.Math.Max(duration + 1, 1); // Duration cannot be less than 1. Added to allow Normal distribution parameters.
}
else
{
duration = System.Math.Max(duration, 1); // Duration cannot be less than 1.
}
// Apply optional maximum - if not used maxDur = Inf
if (duration > insect.MaxDuration)
{
duration = insect.MaxDuration;
}
double timeAfterDuration = timeBetweenOutbreaks - duration;
// Users can parameterize model to have overlapping outbreaks, but then patches will not initialize correctly.
// Do below to prevent overlapping outbreaks of same insect. This will affect the realized distribution of time between outbreaks somewhat.
while (timeAfterDuration <= 1.0)
{
PlugIn.ModelCore.UI.WriteLine("CAUTION: Time Between Outbreaks TOO SMALL (< 1), you may need to adjust timing parameters: {0}.", timeAfterDuration);
timeBetweenOutbreaks = timeBetweenOutbreaks + 1;
timeAfterDuration = timeBetweenOutbreaks - duration;
}
//PlugIn.ModelCore.UI.WriteLine("Calculated time between = {0:0.00}. inputMeanTime={1:0.00}, inputStdTime={2:0.00}., timeAftDur={3:0.00}.", timeBetweenOutbreaks, insect.MeanTimeBetweenOutbreaks, insect.StdDevTimeBetweenOutbreaks, timeAfterDuration);
// The logic below determines whether an outbreak is active. And sets a new outbreak duration and timeBetweenOutbreaks
// for the next outbreak if is the last year of an outbreak.
// The very first outbreak is set first.
if (PlugIn.ModelCore.CurrentTime == 1)
{
PlugIn.ModelCore.UI.WriteLine(" Year 1: Setting initial start and stop times.");
double randomNum1 = PlugIn.ModelCore.GenerateUniform();
//insect.OutbreakStartYear = (int) (timeBetweenOutbreaks / 2.0) + 1;
insect.OutbreakStartYear = Math.Max(2, (int)(randomNum1 * timeBetweenOutbreaks + 1)); // New, try making 1st start year more random. 1st outbreak has to occur > year1 to for InitializeDefoliationPatches to work properly.
insect.OutbreakStartYear = Math.Max(insect.OutbreakStartYear, insect.StartYear); // BRM - optional start year (first outbreak can't be before StartYear)
insect.OutbreakStopYear = insect.OutbreakStartYear + (int)duration - 1;
// PlugIn.ModelCore.UI.WriteLine(" {0} is not active. StartYear={1}, StopYear={2}, CurrentYear={3}.", insect.Name, insect.OutbreakStartYear, insect.OutbreakStopYear, PlugIn.ModelCore.CurrentTime);
}
else if (insect.OutbreakStartYear <= PlugIn.ModelCore.CurrentTime &&
insect.OutbreakStopYear > PlugIn.ModelCore.CurrentTime) // first year of a multiyear outbreak
{
// PlugIn.ModelCore.UI.WriteLine(" An outbreak starts or continues. Start and stop time do not change.");
insect.ActiveOutbreak = true;
PlugIn.ModelCore.UI.WriteLine(" {0} is active. StartYear={1}, StopYear={2}, CurrentYear={3}.", insect.Name, insect.OutbreakStartYear, insect.OutbreakStopYear, PlugIn.ModelCore.CurrentTime);
insect.MortalityYear = PlugIn.ModelCore.CurrentTime + 1;
insect.LastStartYear = insect.OutbreakStartYear; // Added here for Brian's log file.
insect.LastStopYear = insect.OutbreakStopYear; // Added here for Brian's log file.
}
//Special case for single year outbreak.
else if (insect.OutbreakStartYear == PlugIn.ModelCore.CurrentTime &&
insect.OutbreakStopYear == PlugIn.ModelCore.CurrentTime)
{
insect.ActiveOutbreak = true;
PlugIn.ModelCore.UI.WriteLine(" {0} is active. StartYear={1}, StopYear={2}, CurrentYear={3}.", insect.Name, insect.OutbreakStartYear, insect.OutbreakStopYear, PlugIn.ModelCore.CurrentTime);
if (insect.OutbreakStartYear == insect.OutbreakStopYear) // shouldn't need this. JRF
{
insect.SingleOutbreakYear = true;
}
insect.MortalityYear = PlugIn.ModelCore.CurrentTime + 1;
insect.LastStartYear = insect.OutbreakStartYear; // Added here for Brian's log file.
insect.LastStopYear = insect.OutbreakStopYear; // Added here for Brian's log file.
insect.OutbreakStartYear = PlugIn.ModelCore.CurrentTime + (int)timeBetweenOutbreaks;
insect.OutbreakStopYear = insect.OutbreakStartYear + (int)duration - 1;
}
else if (insect.OutbreakStopYear <= PlugIn.ModelCore.CurrentTime &&
timeAfterDuration > PlugIn.ModelCore.CurrentTime - insect.OutbreakStopYear)
{
// PlugIn.ModelCore.UI.WriteLine(" In between outbreaks, reset start and stop times.");
insect.ActiveOutbreak = true;
PlugIn.ModelCore.UI.WriteLine(" {0} is active. StartYear={1}, StopYear={2}, CurrentYear={3}.", insect.Name, insect.OutbreakStartYear, insect.OutbreakStopYear, PlugIn.ModelCore.CurrentTime);
insect.MortalityYear = PlugIn.ModelCore.CurrentTime + 1;
insect.LastStartYear = insect.OutbreakStartYear; // Added here for Brian's log file.
insect.LastStopYear = insect.OutbreakStopYear; // Added here for Brian's log file.
insect.OutbreakStartYear = PlugIn.ModelCore.CurrentTime + (int)timeBetweenOutbreaks;
insect.OutbreakStopYear = insect.OutbreakStartYear + (int)duration - 1;
}
PlugIn.ModelCore.UI.WriteLine(" Insect Start Time = {0}, Stop Time = {1}.", insect.OutbreakStartYear, insect.OutbreakStopYear);
// Now that logic determining when an outbreak will be active is done, tell model what to do when outbreak is occurring.
if (insect.ActiveOutbreak)
{
// PlugIn.ModelCore.UI.WriteLine(" OutbreakStartYear={0}.", insect.OutbreakStartYear);
if (insect.OutbreakStartYear == PlugIn.ModelCore.CurrentTime || insect.SingleOutbreakYear)
{
// Initialize neighborhoodGrowthReduction with patches
Outbreak.InitializeDefoliationPatches(insect);
}
else
{
insect.NeighborhoodDefoliation.ActiveSiteValues = 0;
}
}
// Now report on the previous year's defoliation, that which has been processed
// through biomass succession. Calculations for logfile.
double sumDefoliation = 0.0;
double meanDefoliation = 0.0;
int numSites0_33 = 0;
int numSites33_66 = 0;
int numSites66_100 = 0;
int numInitialSites = 0;
int numSitesActive = 0; // Just get a sum of all active sites to calculate mean defoliation accurately for log file.
// ONly calculate for log file when outbreak or mortality is active <- Modified, JRF, add to log file each year.
if (insect.ActiveOutbreak || insect.SingleOutbreakYear || (insect.LastStopYear + 1 >= PlugIn.ModelCore.CurrentTime) || (insect.LastBioRemoved > 0))
{
foreach (ActiveSite site in PlugIn.ModelCore.Landscape)
{
sumDefoliation += insect.LastYearDefoliation[site];
if (insect.LastYearDefoliation[site] > 0.0 && insect.LastYearDefoliation[site] <= 0.33)
{
numSites0_33++;
}
if (insect.LastYearDefoliation[site] > 0.33 && insect.LastYearDefoliation[site] <= 0.66)
{
numSites33_66++;
}
if (insect.LastYearDefoliation[site] > 0.66 && insect.LastYearDefoliation[site] <= 1.0)
{
numSites66_100++;
}
if (insect.Disturbed[site] && SiteVars.InitialOutbreakProb[site] > 0)
{
numInitialSites++;
}
numSitesActive++;
}
if (insect.OutbreakStartYear == PlugIn.ModelCore.CurrentTime)
{
insect.InitialSites = numInitialSites;
}
if (numSites0_33 + numSites33_66 + numSites66_100 > 0)
{
meanDefoliation = sumDefoliation / (double)numSitesActive;
}
//PlugIn.ModelCore.UI.WriteLine(" sumDefoliation={0}, numSites={1}.", sumDefoliation, numSites0_33 + numSites33_66 + numSites66_100);
}
int totalBioRemoved = 0;
foreach (ActiveSite site in PlugIn.ModelCore.Landscape)
{
totalBioRemoved += SiteVars.BiomassRemoved[site]; // kg across all defoliated sites
}
insect.LastBioRemoved = totalBioRemoved; //Assign variables for the logfile
// PlugIn.ModelCore.UI.WriteLine(" totalBioRemoved={0}.", totalBioRemoved);
// ONly add to log & output maps during outbreak <- Modified, JRF, add to log file each year.
//if ((insect.ActiveOutbreak && insect.OutbreakStartYear < PlugIn.ModelCore.CurrentTime) || (meanDefoliation > 0) || (insect.LastBioRemoved > 0))
//{
/* Old code for log file
* if (meanDefoliation > 0)
* {
*
* log.Write("{0},{1},{2},{3},{4:0.0000},{5},{6},{7},{8},{9}",
* PlugIn.ModelCore.CurrentTime-1, //0
* insect.Name, //1
* insect.LastStartYear, //2
* insect.LastStopYear, //3
* meanDefoliation, //4
* numSites0_33, //5
* numSites33_66, //6
* numSites66_100, //7
* insect.InitialSites, //8
* insect.LastBioRemoved //9
* );
* }
*
* else
* {
* log.Write("{0},{1},{2},{3},{4:0.0000},{5},{6},{7},{8},{9}",
* PlugIn.ModelCore.CurrentTime - 1, //0
* insect.Name, //1
* 0, //2
* 0, //3
* meanDefoliation, //4
* numSites0_33, //5
* numSites33_66, //6
* numSites66_100, //7
* 0, //8
* insect.LastBioRemoved //9
* );
* }
*
*
* //foreach (IEcoregion ecoregion in Ecoregions.Dataset)
* // log.Write(",{0}", 1);
*
* log.WriteLine("");
*/
eventLog.Clear();
EventsLog el = new EventsLog();
el.Time = PlugIn.ModelCore.CurrentTime - 1;
el.InsectName = insect.Name;
el.MeanDefoliation = meanDefoliation;
el.NumSitesDefoliated0_33 = numSites0_33;
el.NumSitesDefoliated33_66 = numSites33_66;
el.NumSitesDefoliated66_100 = numSites66_100;
el.NumOutbreakInitialSites = insect.InitialSites;
el.MortalityBiomass = insect.LastBioRemoved;
if (insect.ActiveOutbreak)
{
el.StartYear = insect.OutbreakStartYear;
el.StopYear = insect.OutbreakStopYear;
}
else
{
el.StartYear = insect.LastStartYear;
el.StopYear = insect.LastStopYear;
}
eventLog.AddObject(el);
eventLog.WriteToFile();
//----- Write Insect Defoliation/GrowthReduction maps --------
string path = MapNames.ReplaceTemplateVars(mapNameTemplate, insect.Name, PlugIn.ModelCore.CurrentTime - 1);
using (IOutputRaster <ShortPixel> outputRaster = modelCore.CreateRaster <ShortPixel>(path, modelCore.Landscape.Dimensions))
{
ShortPixel pixel = outputRaster.BufferPixel;
foreach (Site site in PlugIn.ModelCore.Landscape.AllSites)
{
if (site.IsActive)
{
pixel.MapCode.Value = (short)(insect.LastYearDefoliation[site] * 100.0);
}
else
{
// Inactive site
pixel.MapCode.Value = 0;
}
outputRaster.WriteBufferPixel();
}
}
//----- Write Initial Patch maps --------
string path2 = MapNames.ReplaceTemplateVars(mapNameTemplate, ("InitialPatchMap" + insect.Name), PlugIn.ModelCore.CurrentTime);
using (IOutputRaster <ShortPixel> outputRaster = modelCore.CreateRaster <ShortPixel>(path2, modelCore.Landscape.Dimensions))
{
ShortPixel pixel = outputRaster.BufferPixel;
foreach (Site site in PlugIn.ModelCore.Landscape.AllSites)
{
if (site.IsActive)
{
if (insect.Disturbed[site])
{
pixel.MapCode.Value = (short)(SiteVars.InitialOutbreakProb[site] * 100);
}
else
{
pixel.MapCode.Value = 0;
}
}
else
{
// Inactive site
pixel.MapCode.Value = 0;
}
outputRaster.WriteBufferPixel();
//Zero out the InitialOutbreakProb after output maps are written.
SiteVars.InitialOutbreakProb[site] = 0;
}
}
//----- Write Biomass Reduction maps --------
string path3 = MapNames.ReplaceTemplateVars(mapNameTemplate, ("BiomassRemoved" + insect.Name), PlugIn.ModelCore.CurrentTime);
using (IOutputRaster <ShortPixel> outputRaster = modelCore.CreateRaster <ShortPixel>(path3, modelCore.Landscape.Dimensions))
{
ShortPixel pixel = outputRaster.BufferPixel;
foreach (Site site in PlugIn.ModelCore.Landscape.AllSites)
{
if (site.IsActive)
{
if (SiteVars.BiomassRemoved[site] > 0)
{
pixel.MapCode.Value = Math.Max((short)1, (short)(SiteVars.BiomassRemoved[site] / 100)); // convert to Mg/ha
}
else
{
pixel.MapCode.Value = 0;
}
}
else
{
// Inactive site
pixel.MapCode.Value = 0;
}
outputRaster.WriteBufferPixel();
//Zero out the BiomassRemoved after the last insect mortality event in a given year.
SiteVars.BiomassRemoved[site] = 0;
}
}
//}
//insect.ThisYearDefoliation.ActiveSiteValues = 0.0; //reset this year to 0 for all sites, this was already done at the top of loop to initialize defoliation patchs, Outbreak.cs
}
}