public void Update(Individual sourceIndividual, Individual targetIndividual)
{
foreach (var molecule in sourceIndividual.AllMolecules())
{
var newMolecule = _cloner.Clone(molecule);
targetIndividual.AddMolecule(newMolecule);
//we have to reset the new ontogeny for the molecule
_ontogenyTask.SetOntogenyForMolecule(newMolecule, newMolecule.Ontogeny, targetIndividual);
}
}
private void setDefaultOntogeny(IndividualMolecule molecule, TSimulationSubject simulationSubject, string moleculeName)
{
var ontogeny = _ontogenyRepository.AllFor(simulationSubject.Species.Name).FindByName(moleculeName);
if (ontogeny == null)
{
return;
}
_ontogenyTask.SetOntogenyForMolecule(molecule, ontogeny, simulationSubject);
}
private void setDefaultOntogeny(IndividualMolecule molecule, Individual individual, string moleculeName)
{
var ontogeny = _ontogenyRepository.AllFor(individual.Species.Name).FindByName(moleculeName);
if (ontogeny == null)
{
return;
}
_ontogenyTask.SetOntogenyForMolecule(molecule, ontogeny, individual);
}
public void Update(Individual sourceIndividual, Individual targetIndividual)
{
foreach (var molecule in sourceIndividual.AllMolecules())
{
var newMolecule = _cloner.Clone(molecule);
targetIndividual.AddMolecule(newMolecule);
//Make sure parameters that user defined parameters are reset to default to ensure proper scaling
resetMoleculeParametersToDefault(newMolecule);
//we have to reset the ontogeny for the molecule based on the target individual properties
_ontogenyTask.SetOntogenyForMolecule(newMolecule, newMolecule.Ontogeny, targetIndividual);
}
}
public override async Task <ModelExpressionProfile> MapToModel(SnapshotExpressionProfile snapshot, SnapshotContext snapshotContext)
{
var expressionProfile = _expressionProfileFactory.Create(snapshot.Type, snapshot.Species, snapshot.Molecule);
expressionProfile.Description = snapshot.Description;
expressionProfile.Category = snapshot.Category;
var(molecule, individual) = expressionProfile;
//Update molecule properties first
updateMoleculePropertiesToMolecule(molecule, snapshot, individual, snapshotContext);
//Then override all parameters that were set
await _parameterMapper.MapLocalizedParameters(snapshot.Parameters, individual, snapshotContext, !snapshotContext.IsV9FormatOrEarlier);
var snapshotWithSubjectContext = new SnapshotContextWithSubject(individual, snapshotContext);
var ontogeny = await _ontogenyMapper.MapToModel(snapshot.Ontogeny, snapshotWithSubjectContext);
_ontogenyTask.SetOntogenyForMolecule(molecule, ontogeny, individual);
var context = new ExpressionContainerMapperContext(snapshotContext)
{
Molecule = molecule,
ExpressionParameters = individual.AllExpressionParametersFor(molecule),
MoleculeExpressionContainers = individual.AllMoleculeContainersFor(molecule),
};
await _expressionContainerMapper.MapToModels(snapshot.Expression, context);
//We need to normalize relative expressions when loading from old format
if (snapshotContext.IsV9FormatOrEarlier)
{
//Make sure we load the default parameters from db just in case we were dealing with a standard molecule
_moleculeParameterTask.SetDefaultMoleculeParameters(molecule);
//Global parameters were saved directly under the snapshot parameter
await updateGlobalMoleculeParameters(snapshot, molecule, snapshotContext);
NormalizeRelativeExpressionCommand.NormalizeExpressions(individual, molecule);
}
return(expressionProfile);
}
public override async Task <IndividualMolecule> MapToModel(Molecule snapshot, ModelIndividual individual)
{
var molecule = createMoleculeFrom(snapshot, individual);
MapSnapshotPropertiesToModel(snapshot, molecule);
//This call should happen before updating parameters from snapshot to ensure that default molecule
//parameters that were updated by the user are taking precedence.
_moleculeExpressionTask.SetDefaulMoleculeParameters(molecule);
await UpdateParametersFromSnapshot(snapshot, molecule, snapshot.Type.ToString());
updateMoleculePropertiesToMolecule(molecule, snapshot);
var ontogeny = await _ontogenyMapper.MapToModel(snapshot.Ontogeny, individual);
_ontogenyTask.SetOntogenyForMolecule(molecule, ontogeny, individual);
await updateExpression(snapshot, new ExpressionContainerMapperContext { Molecule = molecule, SimulationSubject = individual });
return(molecule);
}
private void updateGlobalMoleculeSettings(IndividualMolecule sourceMolecule, IndividualMolecule targetMolecule, ISimulationSubject targetSimulationSubject)
{
targetMolecule.UpdatePropertiesFrom(sourceMolecule, _cloner);
_ontogenyTask.SetOntogenyForMolecule(targetMolecule, targetMolecule.Ontogeny, targetSimulationSubject);
}
public void SelectedOntogenyIs(Ontogeny ontogeny)
{
AddCommand(_ontogenyTask.SetOntogenyForMolecule(_individualMolecule, ontogeny, _simulationSubject));
updateShowOntogenyButton();
}
