protected override void Context()
{
CreateDimensionFactory();
sut = new DataTableToImportQuantityDTOMapperForSimulations(_dimensionFactory);
_simulation = A.Fake <IMoBiSimulation>();
_dataTable = new DataTableProvider().ImportTables();
}
protected override void Context()
{
_simulation = new MoBiSimulation();
_buildingBlock = new MoleculeBuildingBlock();
_formulaParameter = new Parameter().WithFormula(new ExplicitFormula()).WithName("formula");
_formulaParameter.Value = 9;
_constantParameter = new Parameter().WithFormula(new ConstantFormula(1.0)).WithName("constant");
_unaffectedParameter = new Parameter().WithFormula(new ConstantFormula(1.0)).WithName("unaffected");
_unaffectedParameter.Value = 5.0;
_constantParameter.Value = 9;
_simulation.Model = new Model {
Root = new Container {
_formulaParameter, _constantParameter, _unaffectedParameter
}
};
_context = A.Fake <IMoBiContext>();
sut = new ResetFixedConstantParametersToDefaultInSimulationCommand <MoleculeBuildingBlock>(_simulation, _buildingBlock);
_affectedBuildingBlockRetriever = A.Fake <IAffectedBuildingBlockRetriever>();
_formulaTask = A.Fake <IMoBiFormulaTask>();
A.CallTo(() => _formulaTask.CreateNewFormula <ConstantFormula>(A <IDimension> ._)).Returns(new ConstantFormula());
A.CallTo(() => _context.Resolve <IAffectedBuildingBlockRetriever>()).Returns(_affectedBuildingBlockRetriever);
A.CallTo(() => _context.Resolve <IMoBiFormulaTask>()).Returns(_formulaTask);
var buildingBlockInfo = new MoleculesInfo {
BuildingBlock = _buildingBlock
};
A.CallTo(() => _affectedBuildingBlockRetriever.RetrieveFor(_constantParameter, _simulation)).Returns(buildingBlockInfo);
A.CallTo(() => _affectedBuildingBlockRetriever.RetrieveFor(_formulaParameter, _simulation)).Returns(buildingBlockInfo);
}
protected override void Context()
{
base.Context();
_simulation = A.Fake <IMoBiSimulation>();
_buildingBlock = A.Fake <IBuildingBlock>();
sut.Initialize(_buildingBlock, _simulation);
}
private void synchronizeFixedParameterValues(IMoBiSimulation simulationToUpdate, PathCache <IQuantity> fixedValueQuantities, IBuildingBlock templateBuildingBlock)
{
var currentQuantities = new PathCache <IQuantity>(_entityPathResolver);
currentQuantities.AddRange(simulationToUpdate.Model.Root.GetAllChildren <IQuantity>());
foreach (var fixedValueQuantity in fixedValueQuantities.KeyValues)
{
//quantity does not exist anymore after update. Nothing to do
var simulationQuantity = currentQuantities[fixedValueQuantity.Key];
if (simulationQuantity == null)
{
continue;
}
//building block corresponding to quantity could not be found. That should never happen
var affectedBuildingBlock = _affectedBuildingBlockRetriever.RetrieveFor(simulationQuantity, simulationToUpdate);
if (affectedBuildingBlock?.UntypedTemplateBuildingBlock == null)
{
continue;
}
//The quantity previously fixed is part of the template building block. We should not reset the changes
if (Equals(affectedBuildingBlock.UntypedTemplateBuildingBlock, templateBuildingBlock))
{
continue;
}
synchronizeQuantities(fixedValueQuantity.Value, simulationQuantity);
}
}
protected IMoBiCommand CreateCommitCommand(IMoBiSimulation simulation, IBuildingBlock templateBuildingBlock)
{
var typedTemplateBuildingBlock = templateBuildingBlock.DowncastTo <T>();
var cloneOfBuildingBlockInSimulation = _cloneManager.CloneBuildingBlock(_buildingBlockRetriever(simulation.BuildConfiguration));
return(new UpdateTemplateBuildingBlockFromSimulationBuildingBlockCommand <T>(typedTemplateBuildingBlock, cloneOfBuildingBlockInSimulation, simulation));
}
protected override void Context()
{
_view = A.Fake <ICreateSimulationView>();
_subPresenterManager = A.Fake <ISubPresenterItemManager <ISimulationItemPresenter> >();
_buildConfigurationPresenter = _subPresenterManager.CreateFake(SimulationItems.BuildConfiguration);
_moleculeStartValuesPresenter = _subPresenterManager.CreateFake(SimulationItems.MoleculeStartValues);
_parameterStartValuesPresenter = _subPresenterManager.CreateFake(SimulationItems.ParameterStartValues);
_finalActionPresenter = _subPresenterManager.CreateFake(SimulationItems.FinalOptions);
A.CallTo(() => _subPresenterManager.AllSubPresenters).Returns(new ISimulationItemPresenter[] { _buildConfigurationPresenter, _moleculeStartValuesPresenter, _parameterStartValuesPresenter, _finalActionPresenter });
_context = A.Fake <IMoBiContext>();
_modelConstructor = A.Fake <IModelConstructor>();
_dialogCreator = A.Fake <IDialogCreator>();
A.CallTo(() => _modelConstructor.CreateModelFrom(A <IBuildConfiguration> ._, A <string> ._)).Returns(A.Fake <CreationResult>());
_validationVisitor = A.Fake <IDimensionValidator>();
_userSettings = A.Fake <IUserSettings>();
_userSettings.CheckCircularReference = true;
_simulationFactory = A.Fake <ISimulationFactory>();
_buildConfigurationFactory = A.Fake <IBuildConfigurationFactory>();
_heavyWorkManager = new HeavyWorkManagerForSpecs();
_forbiddenNameRetriever = A.Fake <IForbiddenNamesRetriever>();
sut = new CreateSimulationPresenter(_view, _context, _modelConstructor, _validationVisitor,
_simulationFactory, _buildConfigurationFactory, _heavyWorkManager, _subPresenterManager, _dialogCreator,
_forbiddenNameRetriever, _userSettings);
_simulation = A.Fake <IMoBiSimulation>();
A.CallTo(() => _simulationFactory.Create()).Returns(_simulation);
_buildConfiguration = createBuildConfiguration();
A.CallTo(() => _simulation.MoBiBuildConfiguration).Returns(_buildConfiguration);
A.CallTo(() => _moleculeStartValuesPresenter.StartValues).Returns(A.Fake <IMoleculeStartValuesBuildingBlock>().WithId(_useId));
A.CallTo(() => _parameterStartValuesPresenter.StartValues).Returns(A.Fake <IParameterStartValuesBuildingBlock>().WithId(_useId));
}
protected override void Context()
{
base.Context();
_simulationToUpdate = A.Fake <IMoBiSimulation>();
_templateBuildingBlock = A.Fake <IBuildingBlock>();
var rootContainer = createRootContainer();
_simulationToUpdate.Model.Root = rootContainer;
_originalParameterFixedNotBelongingToTemplate = rootContainer.Parameter("P1");
_originalParameterFixedNotBelongingToTemplate.Value = 5;
_originalParameterFixedUpdatedByTemplate = rootContainer.Parameter("P2");
_originalParameterFixedUpdatedByTemplate.Value = 8;
_buildingBlockInfoTemplate = A.Fake <IBuildingBlockInfo>();
A.CallTo(() => _buildingBlockInfoTemplate.UntypedTemplateBuildingBlock).Returns(_templateBuildingBlock);
//simulates the update command
var container = createRootContainer();
_updatedParameterFixedNotBelongingToTemplate = container.Parameter(_originalParameterFixedNotBelongingToTemplate.Name);
_updatedParameterFixedUpdatedByTemplate = container.Parameter(_originalParameterFixedUpdatedByTemplate.Name);
A.CallTo(() => _affectedBuildingBlockRetriever.RetrieveFor(_updatedParameterFixedUpdatedByTemplate, _simulationToUpdate)).Returns(_buildingBlockInfoTemplate);
A.CallTo(() => _affectedBuildingBlockRetriever.RetrieveFor(_updatedParameterFixedNotBelongingToTemplate, _simulationToUpdate)).Returns(A.Fake <IBuildingBlockInfo>());
A.CallTo(() => _simulationToUpdate.Update(A <IMoBiBuildConfiguration> ._, A <IModel> ._)).Invokes(x => { _simulationToUpdate.Model.Root = container; });
}
protected override void ClearReferences()
{
_simulation = null;
_formulaTask = null;
_affectedBuildingBlockRetriever = null;
_buildingBlockFromSimulation = null;
}
protected override void Context()
{
base.Context();
_simulation = new MoBiSimulation();
A.CallTo(() => _relatedItemSerializer.Deserialize(_relatedItem)).Returns(_simulation);
A.CallTo(() => _simulationLoader.AddSimulationToProject(_simulation)).Returns(new MoBiMacroCommand());
}
public IMoBiCommand CreateBuildConfigurationBaseOn(IMoBiSimulation simulation, IBuildingBlock templateBuildingBlock)
{
//we create a build configuration where all current building block are referencing template building blocks
BuildConfiguration = _buildConfigurationFactory.CreateFromReferencesUsedIn(simulation.MoBiBuildConfiguration, templateBuildingBlock);
var tmpSimulation = new MoBiSimulation()
{
DiagramManager = _diagramManagerFactory.Create <ISimulationDiagramManager>(),
BuildConfiguration = BuildConfiguration,
Creation = simulation.Creation,
Name = simulation.Name,
};
edit(tmpSimulation);
_view.Caption = AppConstants.Captions.ConfigureSimulation(simulation.Name);
_view.Display();
if (_view.Canceled)
{
return(new MoBiEmptyCommand());
}
//Set the selected MSV AND PSV as per user inputs
UpdateStartValueInfo <IMoleculeStartValuesBuildingBlock, IMoleculeStartValue>(BuildConfiguration.MoleculeStartValuesInfo, SelectedMoleculeStartValues);
UpdateStartValueInfo <IParameterStartValuesBuildingBlock, IParameterStartValue>(BuildConfiguration.ParameterStartValuesInfo, SelectedParameterStartValues);
return(_commands);
}
private ICommand <IMoBiContext> updateSimulation(
IMoBiSimulation simulationToUpdate,
IMoBiBuildConfiguration buildConfigurationReferencingTemplates,
IMoBiCommand configurationCommands,
IBuildingBlock templateBuildingBlock = null,
PathCache <IQuantity> fixedValueQuantities = null)
{
//create model using referencing templates
var model = createModelAndValidate(simulationToUpdate.Model.Name, buildConfigurationReferencingTemplates);
var simulationBuildConfiguration = createBuildConfigurationToUseInSimulation(buildConfigurationReferencingTemplates);
var updateSimulationCommand = templateBuildingBlock == null
? // is null when we a simulation is being configured. Otherwise this is the template building block to user
new UpdateSimulationCommand(simulationToUpdate, model, simulationBuildConfiguration)
: new UpdateSimulationCommand(simulationToUpdate, model, simulationBuildConfiguration, templateBuildingBlock);
updateSimulationCommand.Run(_context);
synchronizeFixedParameterValues(simulationToUpdate, templateBuildingBlock, fixedValueQuantities);
var macro = new MoBiMacroCommand
{
Description = updateSimulationCommand.Description,
CommandType = updateSimulationCommand.CommandType,
ObjectType = updateSimulationCommand.ObjectType
};
macro.Add(configurationCommands);
macro.Add(updateSimulationCommand);
return(macro);
}
public ICommand UpdateSimulationFrom(IMoBiSimulation simulationToUpdate, IBuildingBlock templateBuildingBlock)
{
IMoBiBuildConfiguration buildConfigurationReferencingTemplate;
IMoBiCommand configurationCommands = null;
var fixedValueQuantities = new PathCache <IQuantity>(_entityPathResolver);
if (triggersReconfiguration(templateBuildingBlock))
{
using (var presenter = _applicationController.Start <IConfigureSimulationPresenter>())
{
configurationCommands = presenter.CreateBuildConfigurationBaseOn(simulationToUpdate, templateBuildingBlock);
if (configurationCommands.IsEmpty())
{
return(new MoBiEmptyCommand());
}
buildConfigurationReferencingTemplate = presenter.BuildConfiguration;
}
}
else
{
buildConfigurationReferencingTemplate = createBuildConfigurationUsingTemplates(simulationToUpdate, templateBuildingBlock);
fixedValueQuantities.AddRange(simulationToUpdate.Model.Root.GetAllChildren <IQuantity>(x => x.IsFixedValue));
}
return(updateSimulation(simulationToUpdate, buildConfigurationReferencingTemplate, configurationCommands, templateBuildingBlock, fixedValueQuantities));
}
public OutputSelections OutputSelectionsFor(IMoBiSimulation simulation)
{
using (var presenter = _applicationController.Start <IOutputSelectionsPresenter>())
{
return(presenter.StartSelection(simulation));
}
}
private static MoBiMacroCommand createLoadCommand(IMoBiSimulation simulation)
{
return(new MoBiMacroCommand
{
Description = AppConstants.Commands.AddToProjectDescription("PK-Sim Simulation", simulation.Name)
});
}
public RemoveSimulationCommand(IMoBiSimulation simulation)
{
_simulation = simulation;
ObjectType = ObjectTypes.Simulation;
CommandType = AppConstants.Commands.DeleteCommand;
Description = AppConstants.Commands.RemoveFromProjectDescription(ObjectType, simulation.Name);
}
private static Cache <string, string> getEntityIdCache(IMoBiSimulation simulationToUpdate)
{
var idCache = new Cache <string, string>();
simulationToUpdate.Model.Root.GetAllChildren <IEntity>().Each(x => idCache.Add(x.EntityPath(), x.Id));
return(idCache);
}
protected override void Context()
{
base.Context();
_project = A.Fake <IMoBiProject>();
_simulationTransfer = A.Fake <SimulationTransfer>();
_simulationTransfer.Favorites = new Favorites {
"Fav1", "Fav2"
};
_simulation = A.Fake <IMoBiSimulation>();
_simulationTransfer.Simulation = _simulation;
_newBuildingBlock = A.Fake <IPassiveTransportBuildingBlock>();
_existingBuildingBlock = A.Fake <IMoBiReactionBuildingBlock>().WithId("Existing");
_existingBBInfo = new ReactionBuildingBlockInfo()
{
BuildingBlock = _existingBuildingBlock, TemplateBuildingBlockId = "Existing"
};
_newBBInfo = new PassiveTransportBuildingBlockInfo()
{
BuildingBlock = _newBuildingBlock, TemplateBuildingBlockId = "New"
};
A.CallTo(() => _project.ReactionBlockCollection).Returns(new[] { _existingBuildingBlock });
var moBiBuildConfiguration = A.Fake <IMoBiBuildConfiguration>();
A.CallTo(() => _simulation.MoBiBuildConfiguration).Returns(moBiBuildConfiguration);
A.CallTo(() => moBiBuildConfiguration.AllBuildingBlockInfos()).Returns(new IBuildingBlockInfo[] { _existingBBInfo, _newBBInfo });
moBiBuildConfiguration.ReactionsInfo = _existingBBInfo;
moBiBuildConfiguration.PassiveTransportsInfo = _newBBInfo;
A.CallTo(() => _dialogCreator.AskForFileToOpen(AppConstants.Dialog.LoadSimulation, Constants.Filter.PKML_FILE_FILTER, Constants.DirectoryKey.MODEL_PART, null, null)).Returns("File");
A.CallTo(() => _serializationTask.Load <SimulationTransfer>(A <string> ._, A <bool> ._)).Returns(_simulationTransfer);
A.CallTo(() => _context.CurrentProject).Returns(_project);
A.CallTo(() => _nameCorrector.CorrectName(A <IEnumerable <IPassiveTransportBuildingBlock> > ._, _newBuildingBlock)).Returns(true);
}
public CommitSimulationChangesToBuildingBlockUICommand Initialize(IBuildingBlock templateBuildingBlock, IMoBiSimulation simulation)
{
_templateBuildingBlock = templateBuildingBlock;
_simulation = simulation;
_commitTask = _commitTaskRetriever.TaskFor(templateBuildingBlock);
return(this);
}
private void startSimulationRun(IMoBiSimulation simulation)
{
_simulation = simulation;
_context.PublishEvent(new SimulationRunStartedEvent());
_context.PublishEvent(new ProgressInitEvent(100, AppConstants.SimulationRun));
_simModelManager = _simModelManagerFactory.Create();
try
{
addEvents();
updatePersistableFor(simulation);
var results = _simModelManager.RunSimulation(_simulation);
_simulation.HasChanged = true;
showWarningsIfAny(results);
if (results.Success)
{
_displayUnitUpdater.UpdateDisplayUnitsIn(results.Results);
copyResultsToSimulation(results, _simulation);
}
addCommand(getSimulationResultLabel(results));
}
finally
{
removeEvents();
_context.PublishEvent(new SimulationRunFinishedEvent(_simulation));
_simulation = null;
}
}
public void Compute(IMoBiSimulation simulation)
{
var buildConfiguration = _buildConfigurationFactory.CreateFromReferencesUsedIn(simulation.MoBiBuildConfiguration);
buildConfiguration.ShowProgress = false;
_logger.AddDebug("Creating new simulation from loaded building blocks");
var results = _modelConstructor.CreateModelFrom(buildConfiguration, "BatchRun");
if (results.IsInvalid)
{
_logger.AddWarning(results.ValidationResult.Messages.SelectMany(x => x.Details).ToString());
}
var newSimulation = new MoBiSimulation
{
BuildConfiguration = buildConfiguration,
Model = results.Model,
Id = "Sim"
};
_context.Register(newSimulation);
_logger.AddDebug("Running simulation");
_simModelManager.RunSimulation(newSimulation);
}
private void updateSimulationTo313(IMoBiSimulation sim)
{
_modelUpdater.UpdateModel(sim.Model);
_spatialStructureUpdater.UpdateSpatialStructre((IMoBiSpatialStructure)sim.MoBiBuildConfiguration.SpatialStructure);
_parameterStartValuesUpdater.UpdateParameterStartvalues(sim.MoBiBuildConfiguration.ParameterStartValues, sim);
sim.HasChanged = true;
}
protected override void Context()
{
base.Context();
_simulation = A.Fake <IMoBiSimulation>();
_simulationRunFinishedEvent = new SimulationRunFinishedEvent(_simulation);
sut.Edit(_simulation);
A.CallTo(() => _view.ShowsResults).Returns(false);
}
protected override void Context()
{
base.Context();
_simulation = A.Fake <IMoBiSimulation>();
sut.Edit(_simulation);
_favoritesView = A.Fake <IEditParameterListView>();
A.CallTo(() => _editFavoritePresenter.BaseView).Returns(_favoritesView);
}
public ICommand AddOuputIntervalTo(ISimulationSettings simulationSettings, IMoBiSimulation simulation)
{
var schema = simulationSettings.OutputSchema;
var interval = _outputIntervalFactory.CreateDefault();
interval.Name = _containerTask.CreateUniqueName(schema, interval.Name);
return(getAddCommand(schema, interval, simulationSettings, simulation).Run(_context));
}
public AddSimulationCommand(IMoBiSimulation simulation)
{
_simulation = simulation;
_simulationId = _simulation.Id;
ObjectType = ObjectTypes.Simulation;
CommandType = AppConstants.Commands.AddCommand;
Description = AppConstants.Commands.AddToProjectDescription(ObjectType, simulation.Name);
}
public ICommand AddSimulationToProject(IMoBiSimulation simulation)
{
var loadCommand = createLoadCommand(simulation);
var shouldCloneSimulation = _context.CurrentProject.Simulations.ExistsById(simulation.Id);
addSimulationToProject(simulation, loadCommand, shouldCloneSimulation);
return(loadCommand.Run(_context));
}
protected override void Context()
{
base.Context();
_simulation = new MoBiSimulation().WithId("Id");
sut.AddSimulation(_simulation);
sut.GetOrCreateClassifiableFor <ClassifiableSimulation, IMoBiSimulation>(_simulation);
sut.AllClassifiables.Count.ShouldBeEqualTo(1);
}
protected override void ClearReferences()
{
_simulation = null;
_cloneManagerForModel = null;
_formulaTask = null;
_entityPathResolver = null;
_startValuesBuildingBlock = null;
}
protected override void Context()
{
base.Context();
_settings = A.Fake <OutputSelections>();
A.CallTo(() => _settings.HasSelection).Returns(false);
_simulation = A.Fake <IMoBiSimulation>();
A.CallTo(() => _outputSelectionsRetriever.OutputSelectionsFor(_simulation)).Returns(null);
}
protected override void Context()
{
base.Context();
_simulation = A.Fake <IMoBiSimulation>();
_chartTemplateManagerPresenter = A.Fake <IChartTemplateManagerPresenter>();
A.CallTo(() => _applicationController.Start <IChartTemplateManagerPresenter>()).Returns(_chartTemplateManagerPresenter);
A.CallTo(_chartTemplateManagerPresenter).WithReturnType <bool>().Returns(false);
}