/// <summary>
/// Create a composite schema of both the partitioned columns and the underlying loader columns.
/// </summary>
/// <param name="ectx">The exception context.</param>
/// <param name="cols">The partitioned columns.</param>
/// <param name="subLoader">The sub loader.</param>
/// <returns>The resulting schema.</returns>
private DataViewSchema CreateSchema(IExceptionContext ectx, Column[] cols, ILegacyDataLoader subLoader)
{
Contracts.AssertValue(cols);
Contracts.AssertValue(subLoader);
var builder = new DataViewSchema.Builder();
builder.AddColumns(cols.Select(c => new DataViewSchema.DetachedColumn(c.Name, ColumnTypeExtensions.PrimitiveTypeFromKind(c.Type.Value), null)));
var colSchema = builder.ToSchema();
var subSchema = subLoader.Schema;
if (subSchema.Count == 0)
{
return(colSchema);
}
else
{
var schemas = new DataViewSchema[]
{
subSchema,
colSchema
};
return(new ZipBinding(schemas).OutputSchema);
}
}
private void RunCore(IChannel ch)
{
Host.AssertValue(ch, "ch");
IDataSaver saver;
if (ImplOptions.Saver == null)
{
var ext = Path.GetExtension(ImplOptions.OutputDataFile);
var isBinary = string.Equals(ext, ".idv", StringComparison.OrdinalIgnoreCase);
var isTranspose = string.Equals(ext, ".tdv", StringComparison.OrdinalIgnoreCase);
if (isBinary)
{
saver = new BinarySaver(Host, new BinarySaver.Arguments());
}
else if (isTranspose)
{
saver = new TransposeSaver(Host, new TransposeSaver.Arguments());
}
else
{
saver = new TextSaver(Host, new TextSaver.Arguments());
}
}
else
{
saver = ImplOptions.Saver.CreateComponent(Host);
}
ILegacyDataLoader loader = CreateAndSaveLoader();
using (var file = Host.CreateOutputFile(ImplOptions.OutputDataFile))
DataSaverUtils.SaveDataView(ch, saver, loader, file, ImplOptions.KeepHidden);
}
private LegacyCompositeDataLoader(IHost host, TransformEx[] transforms)
{
Contracts.AssertValue(host, "host");
_host = host;
_host.AssertNonEmpty(transforms);
View = transforms[transforms.Length - 1].Transform;
_tview = View as ITransposeDataView;
var srcLoader = transforms[0].Transform.Source as ILegacyDataLoader;
#if DEBUG
// Assert that the transforms array is consistent: first one starts with loader,
// they are chained together, the loader is not a composite.
for (int i = 1; i < transforms.Length; i++)
{
_host.Assert(transforms[i].Transform.Source == transforms[i - 1].Transform, "Transforms are not linked");
}
_host.AssertValue(srcLoader, "loader", "Transform chain doesn't start with a loader");
_host.Assert(!(srcLoader is LegacyCompositeDataLoader), "Can't have composite source loader");
#endif
_loader = srcLoader;
_transforms = transforms;
}
/// <summary>
/// Loads all transforms from the <paramref name="ctx"/> that pass the <paramref name="isTransformTagAccepted"/> test,
/// applies them sequentially to the <paramref name="srcLoader"/>, and returns the (composite) data loader.
/// </summary>
private static ILegacyDataLoader LoadTransforms(ModelLoadContext ctx, ILegacyDataLoader srcLoader, IHost host, Func <string, bool> isTransformTagAccepted)
{
Contracts.AssertValue(host, "host");
host.AssertValue(srcLoader);
host.AssertValue(ctx);
// *** Binary format ***
// int: sizeof(Float)
// int: number of transforms
// foreach transform: (starting from version VersionAddedTags)
// string: tag
// string: args string
int cbFloat = ctx.Reader.ReadInt32();
host.CheckDecode(cbFloat == sizeof(float));
int cxf = ctx.Reader.ReadInt32();
host.CheckDecode(cxf >= 0);
bool hasTags = ctx.Header.ModelVerReadable >= VersionAddedTags;
var tagData = new List <KeyValuePair <string, string> >();
var acceptedIds = new List <int>();
for (int i = 0; i < cxf; i++)
{
string tag = "";
string argsString = null;
if (hasTags)
{
tag = ctx.LoadNonEmptyString();
argsString = ctx.LoadStringOrNull();
}
if (!isTransformTagAccepted(tag))
{
continue;
}
acceptedIds.Add(i);
tagData.Add(new KeyValuePair <string, string>(tag, argsString));
}
host.Assert(tagData.Count == acceptedIds.Count);
if (tagData.Count == 0)
{
return(srcLoader);
}
return(ApplyTransformsCore(host, srcLoader, tagData.ToArray(),
(h, index, data) =>
{
IDataTransform xf;
ctx.LoadModel <IDataTransform, SignatureLoadDataTransform>(host, out xf,
string.Format(TransformDirTemplate, acceptedIds[index]), data);
return xf;
}));
}
/// <param name="env">The environment.</param>
/// <param name="registrationName">The registration name.</param>
/// <param name="inputDataView">The input data view.</param>
/// <param name="splitColumn">The column to use for splitting data into folds.</param>
/// <param name="args">Cross validation arguments.</param>
/// <param name="createExamples">The delegate to create RoleMappedData</param>
/// <param name="applyTransformsToTestData">The delegate to apply the transforms from the train pipeline to the test data</param>
/// <param name="scorer">The scorer</param>
/// <param name="evaluator">The evaluator</param>
/// <param name="getValidationDataView">The delegate to create validation data view</param>
/// <param name="applyTransformsToValidationData">The delegate to apply the transforms from the train pipeline to the validation data</param>
/// <param name="inputPredictor">The input predictor, for the continue training option</param>
/// <param name="cmd">The command string.</param>
/// <param name="loader">Original loader so we can construct correct pipeline for model saving.</param>
/// <param name="savePerInstance">Whether to produce the per-instance data view.</param>
/// <returns></returns>
public FoldHelper(
IHostEnvironment env,
string registrationName,
IDataView inputDataView,
string splitColumn,
Arguments args,
Func <IHostEnvironment, IChannel, IDataView, ITrainer, RoleMappedData> createExamples,
Func <IHostEnvironment, IChannel, IDataView, RoleMappedData, IDataView, RoleMappedData> applyTransformsToTestData,
IComponentFactory <IDataView, ISchemaBoundMapper, RoleMappedSchema, IDataScorerTransform> scorer,
IComponentFactory <IMamlEvaluator> evaluator,
Func <IDataView> getValidationDataView = null,
Func <IHostEnvironment, IChannel, IDataView, RoleMappedData, IDataView, RoleMappedData> applyTransformsToValidationData = null,
IPredictor inputPredictor = null,
string cmd = null,
ILegacyDataLoader loader = null,
bool savePerInstance = false)
{
Contracts.CheckValue(env, nameof(env));
env.CheckNonWhiteSpace(registrationName, nameof(registrationName));
env.CheckValue(inputDataView, nameof(inputDataView));
env.CheckValue(splitColumn, nameof(splitColumn));
env.CheckParam(args.NumFolds > 1, nameof(args.NumFolds));
env.CheckValue(createExamples, nameof(createExamples));
env.CheckValue(applyTransformsToTestData, nameof(applyTransformsToTestData));
env.CheckValue(args.Trainer, nameof(args.Trainer));
env.CheckValueOrNull(scorer);
env.CheckValueOrNull(evaluator);
env.CheckValueOrNull(args.Calibrator);
env.CheckParam(args.MaxCalibrationExamples > 0, nameof(args.MaxCalibrationExamples));
env.CheckParam(getValidationDataView == null || applyTransformsToValidationData != null, nameof(applyTransformsToValidationData));
env.CheckValueOrNull(inputPredictor);
env.CheckValueOrNull(cmd);
env.CheckValueOrNull(args.OutputModelFile);
env.CheckValueOrNull(loader);
_env = env;
_registrationName = registrationName;
_inputDataView = inputDataView;
_splitColumn = splitColumn;
_numFolds = args.NumFolds;
_createExamples = createExamples;
_applyTransformsToTestData = applyTransformsToTestData;
_trainer = args.Trainer;
_scorer = scorer;
_evaluator = evaluator;
_calibrator = args.Calibrator;
_maxCalibrationExamples = args.MaxCalibrationExamples;
_useThreads = args.UseThreads;
_cacheData = args.CacheData;
_getValidationDataView = getValidationDataView;
_applyTransformsToValidationData = applyTransformsToValidationData;
_inputPredictor = inputPredictor;
_cmd = cmd;
_outputModelFile = args.OutputModelFile;
_loader = loader;
_savePerInstance = savePerInstance;
}
private byte[] SaveLoaderToBytes(ILegacyDataLoader loader)
{
Contracts.CheckValue(loader, nameof(loader));
using (var stream = new MemoryStream())
{
LoaderUtils.SaveLoader(loader, stream);
return(stream.GetBuffer());
}
}
/// <summary>
/// Creates a <see cref="LegacyCompositeDataLoader"/> that starts with the <paramref name="srcLoader"/>,
/// and follows with transforms created from the <paramref name="transformArgs"/> array.
/// If there are no transforms, the <paramref name="srcLoader"/> is returned.
/// </summary>
public static ILegacyDataLoader Create(IHostEnvironment env, ILegacyDataLoader srcLoader,
params KeyValuePair <string, IComponentFactory <IDataView, IDataTransform> >[] transformArgs)
{
Contracts.CheckValue(env, nameof(env));
var h = env.Register(RegistrationName);
h.CheckValue(srcLoader, nameof(srcLoader));
h.CheckValueOrNull(transformArgs);
return(CreateCore(h, srcLoader, transformArgs));
}
private static ILegacyDataLoader CreateCore(IHost host, ILegacyDataLoader srcLoader,
KeyValuePair <string, IComponentFactory <IDataView, IDataTransform> >[] transformArgs)
{
Contracts.AssertValue(host, "host");
host.AssertValue(srcLoader, "srcLoader");
host.AssertValueOrNull(transformArgs);
if (Utils.Size(transformArgs) == 0)
{
return(srcLoader);
}
private ILegacyDataLoader LoadTransformChain(ILegacyDataLoader srcData)
{
Host.Assert(!string.IsNullOrWhiteSpace(ImplOptions.InputModelFile));
using (var file = Host.OpenInputFile(ImplOptions.InputModelFile))
using (var strm = file.OpenReadStream())
using (var rep = RepositoryReader.Open(strm, Host))
using (var pipeLoaderEntry = rep.OpenEntry(ModelFileUtils.DirDataLoaderModel, ModelLoadContext.ModelStreamName))
using (var ctx = new ModelLoadContext(rep, pipeLoaderEntry, ModelFileUtils.DirDataLoaderModel))
return(LegacyCompositeDataLoader.Create(Host, ctx, srcData, x => true));
}
/// <summary>
/// Saves <paramref name="loader"/> to the specified <paramref name="file"/>.
/// </summary>
public static void SaveLoader(ILegacyDataLoader loader, IFileHandle file)
{
Contracts.CheckValue(loader, nameof(loader));
Contracts.CheckValue(file, nameof(file));
Contracts.CheckParam(file.CanWrite, nameof(file), "Must be writable");
using (var stream = file.CreateWriteStream())
{
SaveLoader(loader, stream);
}
}
private void RunCore(IChannel ch)
{
ILegacyDataLoader loader = CreateAndSaveLoader();
using (var schemaWriter = new StringWriter())
{
RunOnData(schemaWriter, ImplOptions, loader);
var str = schemaWriter.ToString();
ch.AssertNonEmpty(str);
ch.Info(str);
}
}
/// <summary>
/// Saves <paramref name="loader"/> to the specified <paramref name="stream"/>.
/// </summary>
public static void SaveLoader(ILegacyDataLoader loader, Stream stream)
{
Contracts.CheckValue(loader, nameof(loader));
Contracts.CheckValue(stream, nameof(stream));
Contracts.CheckParam(stream.CanWrite, nameof(stream), "Must be writable");
using (var rep = RepositoryWriter.CreateNew(stream))
{
ModelSaveContext.SaveModel(rep, loader, ModelFileUtils.DirDataLoaderModel);
rep.Commit();
}
}
/// <summary>
/// Appends transforms to the <paramref name="srcLoader"/> and returns a loader that contains these new transforms.
/// If there are no transforms to append, returns <paramref name="srcLoader"/> intact, otherwise creates a
/// <see cref="LegacyCompositeDataLoader"/>. The transforms are created by sequentially invoking the provided lambda,
/// one time for each element of <paramref name="tagData"/>.
/// </summary>
/// <param name="env">The host environment.</param>
/// <param name="srcLoader">The source loader.</param>
/// <param name="tagData">The array of (tag, creationInfo) pairs. Can be an empty array or null, in which case
/// the function returns <paramref name="srcLoader"/>.</param>
/// <param name="createTransform">The delegate to invoke at each transform creation.
/// Delegate parameters are: host environment, transform index (0 to <c>tagData.Length</c>), source data view.
/// It should return the <see cref="IDataView"/> that should share the same loader as the source data view.</param>
/// <returns>The resulting data loader.</returns>
public static ILegacyDataLoader ApplyTransforms(IHostEnvironment env, ILegacyDataLoader srcLoader,
KeyValuePair<string, string>[] tagData, Func<IHostEnvironment, int, IDataView, IDataView> createTransform)
{
Contracts.CheckValue(env, nameof(env));
var h = env.Register(RegistrationName);
h.CheckValue(srcLoader, nameof(srcLoader));
h.CheckValueOrNull(tagData);
h.CheckValue(createTransform, nameof(createTransform));
if (Utils.Size(tagData) == 0)
return srcLoader;
return ApplyTransformsCore(h, srcLoader, tagData, createTransform);
}
/// <summary>
/// Creates a <see cref="ILegacyDataLoader"/> from the specified source loader, followed by
/// the transforms that are loaded from the <paramref name="ctx"/>, tags filtered by
/// by the <paramref name="isTransformTagAccepted"/>.
/// If the <paramref name="ctx"/> contains no accepted transforms, the <paramref name="srcLoader"/> is
/// returned intact.
/// </summary>
public static ILegacyDataLoader Create(IHostEnvironment env, ModelLoadContext ctx,
ILegacyDataLoader srcLoader, Func <string, bool> isTransformTagAccepted)
{
Contracts.CheckValue(env, nameof(env));
var h = env.Register(RegistrationName);
h.CheckValue(ctx, nameof(ctx));
ctx.CheckAtModel(GetVersionInfo());
h.CheckValue(srcLoader, nameof(srcLoader));
h.CheckValue(isTransformTagAccepted, nameof(isTransformTagAccepted));
return(LoadTransforms(ctx, srcLoader, h, isTransformTagAccepted));
}
/// <summary>
/// Apply one transform to the data loader, and returns a (composite) data loader that contains the result.
/// The transform is created by invoking the lambda for a data source, and it should return an
/// <see cref="IDataView"/> that shares the same loader as the provided source.
/// </summary>
public static ILegacyDataLoader ApplyTransform(IHostEnvironment env, ILegacyDataLoader srcLoader,
string tag, string creationArgs, Func<IHostEnvironment, IDataView, IDataView> createTransform)
{
Contracts.CheckValue(env, nameof(env));
var h = env.Register(RegistrationName);
h.CheckValue(srcLoader, nameof(srcLoader));
h.CheckValueOrNull(tag);
h.CheckValueOrNull(creationArgs);
h.CheckValue(createTransform, nameof(createTransform));
var tagData = new[] { new KeyValuePair<string, string>(tag, creationArgs) };
return ApplyTransformsCore(env.Register(RegistrationName), srcLoader, tagData, (e, index, data) => createTransform(e, data));
}
protected override bool MoveNextCore()
{
// Iterate sub cursor or move to the next file.
while (_subCursor == null || !_subCursor.MoveNext())
{
// Cleanup old sub cursor
if (_subCursor != null)
{
_subCursor.Dispose();
_subCursor = null;
}
if (!TryGetNextPathAndValues(out string path, out string relativePath, out List <string> values))
{
return(false);
}
ILegacyDataLoader loader = null;
try
{
// Load the sub cursor and reset the data.
loader = _parent.CreateLoaderFromBytes(_parent._subLoaderBytes, new MultiFileSource(path));
}
catch (Exception e)
{
Ch.Warning($"Failed to load file {path} due to a loader exception. Moving on to the next file. Ex: {e.Message}");
continue;
}
_subCursor = loader.GetRowCursor(_subActivecolumnsNeeded);
try
{
UpdateSubGetters();
UpdateColumnValues(relativePath, values);
}
catch (InvalidOperationException e)
{
// Failed to load this file so skip.
Ch.Warning(MessageSensitivity.Schema, e.Message);
if (_subCursor != null)
{
_subCursor.Dispose();
_subCursor = null;
}
}
}
return(true);
}
public void LoadBinaryLoaderModelVersion3()
{
var env = new MLContext(1).AddStandardComponents();
using (var modelStream = File.OpenRead(Path.Combine("TestModels", "BinaryLoader-v3.11.0.0.zip")))
using (var rep = RepositoryReader.Open(modelStream, env))
{
ILegacyDataLoader result = ModelFileUtils.LoadLoader(env, rep, new MultiFileSource(null), true);
Assert.Equal(2, result.Schema.Count);
Assert.Equal("Image", result.Schema[0].Name);
Assert.Equal("Class", result.Schema[1].Name);
}
}
private static ILegacyDataLoader CreateCore(IHost host, ILegacyDataLoader srcLoader,
KeyValuePair <string, IComponentFactory <IDataView, IDataTransform> >[] transformArgs)
{
Contracts.AssertValue(host, "host");
host.AssertValue(srcLoader, "srcLoader");
host.AssertValueOrNull(transformArgs);
if (Utils.Size(transformArgs) == 0)
{
return(srcLoader);
}
string GetTagData(IComponentFactory <IDataView, IDataTransform> factory)
{
// When coming from the command line, preserve the string arguments.
// For other factories, we aren't able to get the string.
return((factory as ICommandLineComponentFactory)?.ToString());
}
var tagData = transformArgs
.Select(x => new KeyValuePair <string, string>(x.Key, GetTagData(x.Value)))
.ToArray();
// Warn if tags coincide with ones already present in the loader.
var composite = srcLoader as LegacyCompositeDataLoader;
if (composite != null)
{
using (var ch = host.Start("TagValidation"))
{
foreach (var pair in tagData)
{
if (!string.IsNullOrEmpty(pair.Key) && composite._transforms.Any(x => x.Tag == pair.Key))
{
ch.Warning("The transform with tag '{0}' already exists in the chain", pair.Key);
}
}
}
}
return(ApplyTransformsCore(host, srcLoader, tagData,
(env, index, data) => transformArgs[index].Value.CreateComponent(env, data)));
}
private void RunCore(IChannel ch, string cmd)
{
Host.AssertValue(ch);
IPredictor inputPredictor = null;
if (ImplOptions.ContinueTrain && !TrainUtils.TryLoadPredictor(ch, Host, ImplOptions.InputModelFile, out inputPredictor))
{
ch.Warning("No input model file specified or model file did not contain a predictor. The model state cannot be initialized.");
}
ch.Trace("Constructing data pipeline");
ILegacyDataLoader loader = CreateRawLoader();
// If the per-instance results are requested and there is no name column, add a GenerateNumberTransform.
var preXf = ImplOptions.PreTransforms;
if (!string.IsNullOrEmpty(ImplOptions.OutputDataFile))
{
string name = TrainUtils.MatchNameOrDefaultOrNull(ch, loader.Schema, nameof(ImplOptions.NameColumn), ImplOptions.NameColumn, DefaultColumnNames.Name);
if (name == null)
{
preXf = preXf.Concat(
new[]
{
new KeyValuePair <string, IComponentFactory <IDataView, IDataTransform> >(
"", ComponentFactoryUtils.CreateFromFunction <IDataView, IDataTransform>(
(env, input) =>
{
var args = new GenerateNumberTransform.Options();
args.Columns = new[] { new GenerateNumberTransform.Column()
{
Name = DefaultColumnNames.Name
}, };
args.UseCounter = true;
return(new GenerateNumberTransform(env, args, input));
}))
}).ToArray();
}
}
loader = LegacyCompositeDataLoader.Create(Host, loader, preXf);
ch.Trace("Binding label and features columns");
IDataView pipe = loader;
var stratificationColumn = GetSplitColumn(ch, loader, ref pipe);
var scorer = ImplOptions.Scorer;
var evaluator = ImplOptions.Evaluator;
Func <IDataView> validDataCreator = null;
if (ImplOptions.ValidationFile != null)
{
validDataCreator =
() =>
{
// Fork the command.
var impl = new CrossValidationCommand(this);
return(impl.CreateRawLoader(dataFile: ImplOptions.ValidationFile));
};
}
FoldHelper fold = new FoldHelper(Host, RegistrationName, pipe, stratificationColumn,
ImplOptions, CreateRoleMappedData, ApplyAllTransformsToData, scorer, evaluator,
validDataCreator, ApplyAllTransformsToData, inputPredictor, cmd, loader, !string.IsNullOrEmpty(ImplOptions.OutputDataFile));
var tasks = fold.GetCrossValidationTasks();
var eval = evaluator?.CreateComponent(Host) ??
EvaluateUtils.GetEvaluator(Host, tasks[0].Result.ScoreSchema);
// Print confusion matrix and fold results for each fold.
for (int i = 0; i < tasks.Length; i++)
{
var dict = tasks[i].Result.Metrics;
MetricWriter.PrintWarnings(ch, dict);
eval.PrintFoldResults(ch, dict);
}
// Print the overall results.
if (!TryGetOverallMetrics(tasks.Select(t => t.Result.Metrics).ToArray(), out var overallList))
{
throw ch.Except("No overall metrics found");
}
var overall = eval.GetOverallResults(overallList.ToArray());
MetricWriter.PrintOverallMetrics(Host, ch, ImplOptions.SummaryFilename, overall, ImplOptions.NumFolds);
eval.PrintAdditionalMetrics(ch, tasks.Select(t => t.Result.Metrics).ToArray());
Dictionary <string, IDataView>[] metricValues = tasks.Select(t => t.Result.Metrics).ToArray();
SendTelemetryMetric(metricValues);
// Save the per-instance results.
if (!string.IsNullOrWhiteSpace(ImplOptions.OutputDataFile))
{
var perInstance = EvaluateUtils.ConcatenatePerInstanceDataViews(Host, eval, ImplOptions.CollateMetrics,
ImplOptions.OutputExampleFoldIndex, tasks.Select(t => t.Result.PerInstanceResults).ToArray(), out var variableSizeVectorColumnNames);
if (variableSizeVectorColumnNames.Length > 0)
{
ch.Warning("Detected columns of variable length: {0}. Consider setting collateMetrics- for meaningful per-Folds results.",
string.Join(", ", variableSizeVectorColumnNames));
}
if (ImplOptions.CollateMetrics)
{
ch.Assert(perInstance.Length == 1);
MetricWriter.SavePerInstance(Host, ch, ImplOptions.OutputDataFile, perInstance[0]);
}
else
{
int i = 0;
foreach (var idv in perInstance)
{
MetricWriter.SavePerInstance(Host, ch, ConstructPerFoldName(ImplOptions.OutputDataFile, i), idv);
i++;
}
}
}
}
private static ILegacyDataLoader ApplyTransformsCore(IHost host, ILegacyDataLoader srcLoader,
KeyValuePair <string, string>[] tagData, Func <IHostEnvironment, int, IDataView, IDataView> createTransform)
{
Contracts.AssertValue(host, "host");
host.AssertValue(srcLoader, "srcLoader");
host.AssertNonEmpty(tagData);
host.AssertValue(createTransform, "createTransform");
// If the loader is a composite, we need to start with its underlying pipeline end.
var exes = new List <TransformEx>();
var composite = srcLoader as LegacyCompositeDataLoader;
IDataView srcView;
ILegacyDataLoader pipeStart;
if (composite != null)
{
srcView = composite.View;
exes.AddRange(composite._transforms);
pipeStart = composite._loader;
}
else
{
srcView = pipeStart = srcLoader;
}
IDataView view = srcView;
using (var ch = host.Start("Transforms"))
{
int count = Utils.Size(tagData);
var newlyCreated = new List <TransformEx>();
for (int i = 0; i < count; i++)
{
// REVIEW: this might cause silent automatic tag conflicts if the pipeline is short-circuited.
// Maybe it's better to allow empty tags?
var tag = tagData[i].Key;
if (string.IsNullOrEmpty(tag))
{
tag = GenerateTag(exes.Count);
}
var newDataView = createTransform(host, i, view);
// Append the newly created transforms to the exes list.
// If the newTransform is a 'no-op' transform, i.e. equal to the original view,
// the exes array will not be modified: there's no reason to record details of a no-op transform,
// especially since this would overwrite the useful details of the upstream transform.
newlyCreated.Clear();
IDataView curDataView = newDataView;
while (true)
{
var cur = curDataView as IDataTransform;
if (cur == null)
{
// We reached all the way back to the pipe start. The exes accumulated so far are irrelevant.
ch.Check(curDataView == pipeStart,
"The transform has corrupted the chain (chain no longer starts with the same loader).");
exes.Clear();
break;
}
int index = exes.FindLastIndex(x => x.Transform == cur);
if (index >= 0)
{
// We found a transform in exes to attach to.
if (index < exes.Count - 1)
{
// The transform short-circuited some of the existing ones, remove them.
exes.RemoveRange(index + 1, exes.Count - index - 1);
}
break;
}
newlyCreated.Add(new TransformEx(tag, tagData[i].Value, cur));
curDataView = cur.Source;
}
newlyCreated.Reverse();
exes.AddRange(newlyCreated);
view = newDataView;
}
}
return(view == srcView ? srcLoader : new LegacyCompositeDataLoader(host, exes.ToArray()));
}
private void Run(IChannel ch)
{
ILegacyDataLoader loader = null;
IPredictor rawPred = null;
IDataView view;
RoleMappedSchema trainSchema = null;
if (_model == null && _predictiveModel == null)
{
if (string.IsNullOrEmpty(ImplOptions.InputModelFile))
{
loader = CreateLoader();
rawPred = null;
trainSchema = null;
Host.CheckUserArg(ImplOptions.LoadPredictor != true, nameof(ImplOptions.LoadPredictor),
"Cannot be set to true unless " + nameof(ImplOptions.InputModelFile) + " is also specified.");
}
else
{
LoadModelObjects(ch, _loadPredictor, out rawPred, true, out trainSchema, out loader);
}
view = loader;
}
else if (_model != null)
{
view = _model.Apply(Host, new EmptyDataView(Host, _model.InputSchema));
}
else
{
view = _predictiveModel.TransformModel.Apply(Host, new EmptyDataView(Host, _predictiveModel.TransformModel.InputSchema));
rawPred = _predictiveModel.Predictor;
trainSchema = _predictiveModel.GetTrainingSchema(Host);
}
// Create the ONNX context for storing global information
var assembly = System.Reflection.Assembly.GetExecutingAssembly();
var versionInfo = System.Diagnostics.FileVersionInfo.GetVersionInfo(assembly.Location);
var ctx = new OnnxContextImpl(Host, _name, ProducerName, versionInfo.FileVersion,
ModelVersion, _domain, ImplOptions.OnnxVersion);
// Get the transform chain.
IDataView source;
IDataView end;
LinkedList <ITransformCanSaveOnnx> transforms;
GetPipe(ctx, ch, view, out source, out end, out transforms);
Host.Assert(transforms.Count == 0 || transforms.Last.Value == end);
// If we have a predictor, try to get the scorer for it.
if (rawPred != null)
{
RoleMappedData data;
if (trainSchema != null)
{
data = new RoleMappedData(end, trainSchema.GetColumnRoleNames());
}
else
{
// We had a predictor, but no roles stored in the model. Just suppose
// default column names are OK, if present.
data = new RoleMappedData(end, DefaultColumnNames.Label,
DefaultColumnNames.Features, DefaultColumnNames.GroupId, DefaultColumnNames.Weight, DefaultColumnNames.Name, opt: true);
}
var scorePipe = ScoreUtils.GetScorer(rawPred, data, Host, trainSchema);
var scoreOnnx = scorePipe as ITransformCanSaveOnnx;
if (scoreOnnx?.CanSaveOnnx(ctx) == true)
{
Host.Assert(scorePipe.Source == end);
end = scorePipe;
transforms.AddLast(scoreOnnx);
if (rawPred.PredictionKind == PredictionKind.BinaryClassification || rawPred.PredictionKind == PredictionKind.MulticlassClassification)
{
// Check if the PredictedLabel Column is a KeyDataViewType and has KeyValue Annotations.
// If it does, add a KeyToValueMappingTransformer, to enable NimbusML to get the values back
// when using an ONNX model, as described in https://github.com/dotnet/machinelearning/pull/4841
var predictedLabelColumn = scorePipe.Schema.GetColumnOrNull(DefaultColumnNames.PredictedLabel);
if (predictedLabelColumn.HasValue && HasKeyValues(predictedLabelColumn.Value))
{
var outputData = new KeyToValueMappingTransformer(Host, DefaultColumnNames.PredictedLabel).Transform(scorePipe);
end = outputData;
transforms.AddLast(outputData as ITransformCanSaveOnnx);
}
}
}
else
{
Contracts.CheckUserArg(_loadPredictor != true,
nameof(Arguments.LoadPredictor), "We were explicitly told to load the predictor but we do not know how to save it as ONNX.");
ch.Warning("We do not know how to save the predictor as ONNX. Ignoring.");
}
}
else
{
Contracts.CheckUserArg(_loadPredictor != true,
nameof(Arguments.LoadPredictor), "We were explicitly told to load the predictor but one was not present.");
}
// Convert back to values the KeyDataViewType "pass-through" columns
// (i.e those that remained untouched by the model). This is done to enable NimbusML to get these values
// as described in https://github.com/dotnet/machinelearning/pull/4841
var passThroughColumnNames = GetPassThroughKeyDataViewTypeColumnsNames(source, end);
foreach (var name in passThroughColumnNames)
{
var outputData = new KeyToValueMappingTransformer(Host, name).Transform(end);
end = outputData;
transforms.AddLast(end as ITransformCanSaveOnnx);
}
var model = ConvertTransformListToOnnxModel(ctx, ch, source, end, transforms, _inputsToDrop, _outputsToDrop);
using (var file = Host.CreateOutputFile(_outputModelPath))
using (var stream = file.CreateWriteStream())
model.WriteTo(stream);
if (_outputJsonModelPath != null)
{
using (var file = Host.CreateOutputFile(_outputJsonModelPath))
using (var stream = file.CreateWriteStream())
using (var writer = new StreamWriter(stream))
{
var parsedJson = JsonConvert.DeserializeObject(model.ToString());
writer.Write(JsonConvert.SerializeObject(parsedJson, Formatting.Indented));
}
}
if (!string.IsNullOrWhiteSpace(ImplOptions.OutputModelFile))
{
Contracts.Assert(loader != null);
ch.Trace("Saving the data pipe");
// Should probably include "end"?
SaveLoader(loader, ImplOptions.OutputModelFile);
}
}
private ILegacyDataLoader CreateTransformChain(ILegacyDataLoader loader)
{
return(LegacyCompositeDataLoader.Create(Host, loader, ImplOptions.Transforms));
}
/// <summary>
/// Loads multiple artifacts of interest from the input model file, given the context
/// established by the command line arguments.
/// </summary>
/// <param name="ch">The channel to which to provide output.</param>
/// <param name="wantPredictor">Whether we want a predictor from the model file. If
/// <c>false</c> we will not even attempt to load a predictor. If <c>null</c> we will
/// load the predictor, if present. If <c>true</c> we will load the predictor, or fail
/// noisily if we cannot.</param>
/// <param name="predictor">The predictor in the model, or <c>null</c> if
/// <paramref name="wantPredictor"/> was false, or <paramref name="wantPredictor"/> was
/// <c>null</c> and no predictor was present.</param>
/// <param name="wantTrainSchema">Whether we want the training schema. Unlike
/// <paramref name="wantPredictor"/>, this has no "hard fail if not present" option. If
/// this is <c>true</c>, it is still possible for <paramref name="trainSchema"/> to remain
/// <c>null</c> if there were no role mappings, or pipeline.</param>
/// <param name="trainSchema">The training schema if <paramref name="wantTrainSchema"/>
/// is true, and there were role mappings stored in the model.</param>
/// <param name="pipe">The data pipe constructed from the combination of the
/// model and command line arguments.</param>
protected void LoadModelObjects(
IChannel ch,
bool?wantPredictor, out IPredictor predictor,
bool wantTrainSchema, out RoleMappedSchema trainSchema,
out ILegacyDataLoader pipe)
{
// First handle the case where there is no input model file.
// Everything must come from the command line.
using (var file = Host.OpenInputFile(ImplOptions.InputModelFile))
using (var strm = file.OpenReadStream())
using (var rep = RepositoryReader.Open(strm, Host))
{
// First consider loading the predictor.
if (wantPredictor == false)
{
predictor = null;
}
else
{
ch.Trace("Loading predictor");
predictor = ModelFileUtils.LoadPredictorOrNull(Host, rep);
if (wantPredictor == true)
{
Host.Check(predictor != null, "Could not load predictor from model file");
}
}
// Next create the loader.
var loaderFactory = ImplOptions.Loader;
ILegacyDataLoader trainPipe = null;
if (loaderFactory != null)
{
// The loader is overridden from the command line.
pipe = loaderFactory.CreateComponent(Host, new MultiFileSource(ImplOptions.DataFile));
if (ImplOptions.LoadTransforms == true)
{
Host.CheckUserArg(!string.IsNullOrWhiteSpace(ImplOptions.InputModelFile), nameof(ImplOptions.InputModelFile));
pipe = LoadTransformChain(pipe);
}
}
else
{
var loadTrans = ImplOptions.LoadTransforms ?? true;
pipe = LoadLoader(rep, ImplOptions.DataFile, loadTrans);
if (loadTrans)
{
trainPipe = pipe;
}
}
if (Utils.Size(ImplOptions.Transforms) > 0)
{
pipe = LegacyCompositeDataLoader.Create(Host, pipe, ImplOptions.Transforms);
}
// Next consider loading the training data's role mapped schema.
trainSchema = null;
if (wantTrainSchema)
{
// First try to get the role mappings.
var trainRoleMappings = ModelFileUtils.LoadRoleMappingsOrNull(Host, rep);
if (trainRoleMappings != null)
{
// Next create the training schema. In the event that the loaded pipeline happens
// to be the training pipe, we can just use that. If it differs, then we need to
// load the full pipeline from the model, relying upon the fact that all loaders
// can be loaded with no data at all, to get their schemas.
if (trainPipe == null)
{
trainPipe = ModelFileUtils.LoadLoader(Host, rep, new MultiFileSource(null), loadTransforms: true);
}
trainSchema = new RoleMappedSchema(trainPipe.Schema, trainRoleMappings);
}
// If the role mappings are null, an alternative would be to fail. However the idea
// is that the scorer should always still succeed, although perhaps with reduced
// functionality, even when the training schema is null, since not all versions of
// TLC models will have the role mappings preserved, I believe. And, we do want to
// maintain backwards compatibility.
}
}
}
protected void SaveLoader(ILegacyDataLoader loader, string path)
{
using (var file = Host.CreateOutputFile(path))
LoaderUtils.SaveLoader(loader, file);
}
private void Run(IChannel ch)
{
ILegacyDataLoader loader = null;
IPredictor rawPred = null;
IDataView view;
RoleMappedSchema trainSchema = null;
if (_model == null)
{
if (string.IsNullOrEmpty(ImplOptions.InputModelFile))
{
loader = CreateLoader();
rawPred = null;
trainSchema = null;
Host.CheckUserArg(ImplOptions.LoadPredictor != true, nameof(ImplOptions.LoadPredictor),
"Cannot be set to true unless " + nameof(ImplOptions.InputModelFile) + " is also specifified.");
}
else
{
LoadModelObjects(ch, _loadPredictor, out rawPred, true, out trainSchema, out loader);
}
view = loader;
}
else
{
view = _model.Apply(Host, new EmptyDataView(Host, _model.InputSchema));
}
// Create the ONNX context for storing global information
var assembly = System.Reflection.Assembly.GetExecutingAssembly();
var versionInfo = System.Diagnostics.FileVersionInfo.GetVersionInfo(assembly.Location);
var ctx = new OnnxContextImpl(Host, _name, ProducerName, versionInfo.FileVersion,
ModelVersion, _domain, ImplOptions.OnnxVersion);
// Get the transform chain.
IDataView source;
IDataView end;
LinkedList <ITransformCanSaveOnnx> transforms;
GetPipe(ctx, ch, view, out source, out end, out transforms);
Host.Assert(transforms.Count == 0 || transforms.Last.Value == end);
// If we have a predictor, try to get the scorer for it.
if (rawPred != null)
{
RoleMappedData data;
if (trainSchema != null)
{
data = new RoleMappedData(end, trainSchema.GetColumnRoleNames());
}
else
{
// We had a predictor, but no roles stored in the model. Just suppose
// default column names are OK, if present.
data = new RoleMappedData(end, DefaultColumnNames.Label,
DefaultColumnNames.Features, DefaultColumnNames.GroupId, DefaultColumnNames.Weight, DefaultColumnNames.Name, opt: true);
}
var scorePipe = ScoreUtils.GetScorer(rawPred, data, Host, trainSchema);
var scoreOnnx = scorePipe as ITransformCanSaveOnnx;
if (scoreOnnx?.CanSaveOnnx(ctx) == true)
{
Host.Assert(scorePipe.Source == end);
end = scorePipe;
transforms.AddLast(scoreOnnx);
}
else
{
Contracts.CheckUserArg(_loadPredictor != true,
nameof(Arguments.LoadPredictor), "We were explicitly told to load the predictor but we do not know how to save it as ONNX.");
ch.Warning("We do not know how to save the predictor as ONNX. Ignoring.");
}
}
else
{
Contracts.CheckUserArg(_loadPredictor != true,
nameof(Arguments.LoadPredictor), "We were explicitly told to load the predictor but one was not present.");
}
var model = ConvertTransformListToOnnxModel(ctx, ch, source, end, transforms, _inputsToDrop, _outputsToDrop);
using (var file = Host.CreateOutputFile(_outputModelPath))
using (var stream = file.CreateWriteStream())
model.WriteTo(stream);
if (_outputJsonModelPath != null)
{
using (var file = Host.CreateOutputFile(_outputJsonModelPath))
using (var stream = file.CreateWriteStream())
using (var writer = new StreamWriter(stream))
{
var parsedJson = JsonConvert.DeserializeObject(model.ToString());
writer.Write(JsonConvert.SerializeObject(parsedJson, Formatting.Indented));
}
}
if (!string.IsNullOrWhiteSpace(ImplOptions.OutputModelFile))
{
Contracts.Assert(loader != null);
ch.Trace("Saving the data pipe");
// Should probably include "end"?
SaveLoader(loader, ImplOptions.OutputModelFile);
}
}
