public override List<IGEPOrganism> Execute(IGEPEnvironment environment)
{
var dna = new GEPDNA();
var allele = new GEPAllele(dna);
var main = new GEPGene(environment: environment);
main.Add(allele);
var chromosome = new GEPChromosome(environment: environment, main: main);
var organism = new GEPOrganism(environment: environment) { chromosome };
organism.Parent = environment;
for (var i = 0; i < environment.GeneticCode.DNALength; i++)
allele.DNA.AddRandomNucleotide();
/*
var testAllele = new GEPAllele(new GEPDNA());
var testGene = new GEPGene(environment: environment);
testGene.Add(testAllele);
main.Add(testGene);
for (var i = 0; i < environment.GeneticCode.DNALength; i++)
testAllele.DNA.AddRandomNucleotide();
var test2Allele = new GEPAllele(new GEPDNA());
var test2Gene = new GEPGene(environment: environment);
test2Gene.Add(test2Allele);
main.Add(test2Gene);
for (var i = 0; i < environment.GeneticCode.DNALength; i++)
test2Allele.DNA.AddRandomNucleotide();
var test3Allele = new GEPAllele(new GEPDNA());
var test3Gene = new GEPGene(environment: environment);
test3Gene.Add(test3Allele);
test2Gene.Add(test3Gene);
for (var i = 0; i < environment.GeneticCode.DNALength; i++)
test3Allele.DNA.AddRandomNucleotide();
var test4Allele = new GEPAllele(new GEPDNA());
var test4Gene = new GEPGene(environment: environment);
test4Gene.Add(test4Allele);
main.Add(test4Gene);
for (var i = 0; i < environment.GeneticCode.DNALength; i++)
test4Allele.DNA.AddRandomNucleotide();
var test5Allele = new GEPAllele(new GEPDNA());
var test5Gene = new GEPGene(environment: environment);
test5Gene.Add(test5Allele);
test3Gene.Add(test5Gene);
for (var i = 0; i < environment.GeneticCode.DNALength; i++)
test5Allele.DNA.AddRandomNucleotide();
*/
return new List<IGEPOrganism>() { organism };
}
protected GEPOrganismBase(IGEPEnvironment environment, IEnumerable<IGEPChromosome> collection)
: base(collection: collection)
{
this.GlobalRegistry = new Registry(identifier: environment.GlobalRegistryIdentifier, registryType: RegistryType.Global, readOnly: false);
this.ResultsRegistry = new Registry(identifier: environment.ResultsRegistryIdentifier, registryType: RegistryType.Result, readOnly: false);
}
protected GEPOrganismBase(IGEPEnvironment environment)
: this(environment: environment, collection: new IGEPChromosome[] { })
{
}
/// <summary> /// Creates (i.e. initializes) one or more IGEPOrganisms. /// </summary> /// <param name="environment"></param> /// <returns></returns> public abstract List<IGEPOrganism> Execute(IGEPEnvironment environment);
private IGEPGene CreateGeneFromGenomeUnit(IGEPEnvironment gepEnvironment, IGenomeUnit unit)
{
var gene = new GEPGene(environment: gepEnvironment);
gene.Add(unit.ActiveAllele);
foreach (var inactiveAllele in unit.InactiveAlleles)
gene.Add(inactiveAllele);
return gene;
}
/// <summary>
///
/// </summary>
/// <param name="main">The Main() IGene that will be executed when this IChromosome
/// is executed.</param>
/// <param name="environment"></param>
public GEPChromosome(IGEPEnvironment environment, IGEPGene main)
: base(environment: environment, main:main)
{
}
/// <summary>
///
/// </summary>
/// <param name="main">The Main() IGene that will be executed when this IChromosome
/// is executed.</param>
/// <param name="environment"></param>
protected GEPChromosomeBase(IGEPEnvironment environment, IGEPGene main)
{
this.Main = main;
this.Main.Parent = this;
this.LocalGlobalRegistry = new Registry(identifier: environment.LocalGlobalRegistryIdentifier, registryType: RegistryType.LocalGlobal, readOnly: false);
}