public async Task InitializeAsync()
{
var fhirStoredProcs = typeof(IFhirStoredProcedure).Assembly
.GetTypes()
.Where(x => !x.IsAbstract && typeof(IFhirStoredProcedure).IsAssignableFrom(x))
.ToArray()
.Select(type => (IFhirStoredProcedure)Activator.CreateInstance(type));
var optionsMonitor = Substitute.For <IOptionsMonitor <CosmosCollectionConfiguration> >();
optionsMonitor.Get(CosmosDb.Constants.CollectionConfigurationName).Returns(_cosmosCollectionConfiguration);
var updaters = new IFhirCollectionUpdater[]
{
new FhirCollectionSettingsUpdater(_cosmosDataStoreConfiguration, optionsMonitor, NullLogger <FhirCollectionSettingsUpdater> .Instance),
new FhirStoredProcedureInstaller(fhirStoredProcs),
};
var dbLock = new CosmosDbDistributedLockFactory(Substitute.For <Func <IScoped <IDocumentClient> > >(), NullLogger <CosmosDbDistributedLock> .Instance);
var upgradeManager = new FhirCollectionUpgradeManager(updaters, _cosmosDataStoreConfiguration, optionsMonitor, dbLock, NullLogger <FhirCollectionUpgradeManager> .Instance);
IDocumentClientTestProvider testProvider = new DocumentClientReadWriteTestProvider();
var fhirRequestContextAccessor = new FhirRequestContextAccessor();
var documentClientInitializer = new FhirDocumentClientInitializer(testProvider, fhirRequestContextAccessor, NullLogger <FhirDocumentClientInitializer> .Instance);
_documentClient = documentClientInitializer.CreateDocumentClient(_cosmosDataStoreConfiguration);
var fhirCollectionInitializer = new CollectionInitializer(_cosmosCollectionConfiguration.CollectionId, _cosmosDataStoreConfiguration, _cosmosCollectionConfiguration.InitialCollectionThroughput, upgradeManager, NullLogger <CollectionInitializer> .Instance);
// Cosmos DB emulators throws errors when multiple collections are initialized concurrently.
// Use the semaphore to only allow one initialization at a time.
await CollectionInitializationSemaphore.WaitAsync();
try
{
await documentClientInitializer.InitializeDataStore(_documentClient, _cosmosDataStoreConfiguration, new List <ICollectionInitializer> {
fhirCollectionInitializer
});
}
finally
{
CollectionInitializationSemaphore.Release();
}
var cosmosDocumentQueryFactory = new FhirCosmosDocumentQueryFactory(Substitute.For <IFhirRequestContextAccessor>(), NullFhirDocumentQueryLogger.Instance);
var documentClient = new NonDisposingScope(_documentClient);
_fhirDataStore = new CosmosFhirDataStore(
() => documentClient,
_cosmosDataStoreConfiguration,
optionsMonitor,
cosmosDocumentQueryFactory,
new RetryExceptionPolicyFactory(_cosmosDataStoreConfiguration),
NullLogger <CosmosFhirDataStore> .Instance,
new Stu3ModelInfoProvider());
_fhirOperationDataStore = new CosmosFhirOperationDataStore(
() => documentClient,
_cosmosDataStoreConfiguration,
optionsMonitor,
new RetryExceptionPolicyFactory(_cosmosDataStoreConfiguration),
NullLogger <CosmosFhirOperationDataStore> .Instance);
_fhirStorageTestHelper = new CosmosDbFhirStorageTestHelper(
_documentClient,
UriFactory.CreateDocumentCollectionUri(_cosmosDataStoreConfiguration.DatabaseId, _cosmosCollectionConfiguration.CollectionId));
}
public SqlServerFhirStorageTestsFixture()
{
var initialConnectionString = Environment.GetEnvironmentVariable("SqlServer:ConnectionString") ?? LocalConnectionString;
_databaseName = $"FHIRINTEGRATIONTEST_{DateTimeOffset.UtcNow.ToUnixTimeSeconds()}_{BigInteger.Abs(new BigInteger(Guid.NewGuid().ToByteArray()))}";
string masterConnectionString = new SqlConnectionStringBuilder(initialConnectionString)
{
InitialCatalog = "master"
}.ToString();
TestConnectionString = new SqlConnectionStringBuilder(initialConnectionString)
{
InitialCatalog = _databaseName
}.ToString();
var schemaOptions = new SqlServerSchemaOptions {
AutomaticUpdatesEnabled = true
};
var config = new SqlServerDataStoreConfiguration {
ConnectionString = TestConnectionString, Initialize = true, SchemaOptions = schemaOptions
};
var schemaInformation = new SchemaInformation(SchemaVersionConstants.Min, SchemaVersionConstants.Max);
var scriptProvider = new ScriptProvider <SchemaVersion>();
var schemaUpgradeRunner = new SchemaUpgradeRunner(scriptProvider, config, NullLogger <SchemaUpgradeRunner> .Instance);
_schemaInitializer = new SchemaInitializer(config, schemaUpgradeRunner, schemaInformation, NullLogger <SchemaInitializer> .Instance);
var searchParameterDefinitionManager = Substitute.For <ISearchParameterDefinitionManager>();
searchParameterDefinitionManager.AllSearchParameters.Returns(new[]
{
new SearchParameter {
Name = SearchParameterNames.Id, Type = SearchParamType.Token, Url = SearchParameterNames.IdUri.ToString()
}.ToInfo(),
new SearchParameter {
Name = SearchParameterNames.LastUpdated, Type = SearchParamType.Date, Url = SearchParameterNames.LastUpdatedUri.ToString()
}.ToInfo(),
});
var securityConfiguration = new SecurityConfiguration {
PrincipalClaims = { "oid" }
};
var sqlServerFhirModel = new SqlServerFhirModel(config, _schemaInitializer, searchParameterDefinitionManager, Options.Create(securityConfiguration), NullLogger <SqlServerFhirModel> .Instance);
var serviceCollection = new ServiceCollection();
serviceCollection.AddSqlServerTableRowParameterGenerators();
serviceCollection.AddSingleton(sqlServerFhirModel);
ServiceProvider serviceProvider = serviceCollection.BuildServiceProvider();
var upsertResourceTvpGenerator = serviceProvider.GetRequiredService <VLatest.UpsertResourceTvpGenerator <ResourceMetadata> >();
var searchParameterToSearchValueTypeMap = new SearchParameterToSearchValueTypeMap(new SupportedSearchParameterDefinitionManager(searchParameterDefinitionManager));
SqlTransactionHandler = new SqlTransactionHandler();
SqlConnectionWrapperFactory = new SqlConnectionWrapperFactory(config, SqlTransactionHandler, new SqlCommandWrapperFactory());
_fhirDataStore = new SqlServerFhirDataStore(config, sqlServerFhirModel, searchParameterToSearchValueTypeMap, upsertResourceTvpGenerator, Options.Create(new CoreFeatureConfiguration()), SqlConnectionWrapperFactory, NullLogger <SqlServerFhirDataStore> .Instance);
_fhirOperationDataStore = new SqlServerFhirOperationDataStore(SqlConnectionWrapperFactory, NullLogger <SqlServerFhirOperationDataStore> .Instance);
_testHelper = new SqlServerFhirStorageTestHelper(TestConnectionString, initialConnectionString, masterConnectionString, sqlServerFhirModel);
}
internal SqlServerFhirStorageTestsFixture(int maximumSupportedSchemaVersion, string databaseName)
{
var initialConnectionString = Environment.GetEnvironmentVariable("SqlServer:ConnectionString") ?? LocalConnectionString;
_maximumSupportedSchemaVersion = maximumSupportedSchemaVersion;
_databaseName = databaseName;
TestConnectionString = new SqlConnectionStringBuilder(initialConnectionString)
{
InitialCatalog = _databaseName
}.ToString();
var schemaOptions = new SqlServerSchemaOptions {
AutomaticUpdatesEnabled = true
};
var config = new SqlServerDataStoreConfiguration {
ConnectionString = TestConnectionString, Initialize = true, SchemaOptions = schemaOptions
};
var schemaInformation = new SchemaInformation(SchemaVersionConstants.Min, maximumSupportedSchemaVersion);
var scriptProvider = new ScriptProvider <SchemaVersion>();
var baseScriptProvider = new BaseScriptProvider();
var mediator = Substitute.For <IMediator>();
var sqlConnectionStringProvider = new DefaultSqlConnectionStringProvider(config);
var sqlConnectionFactory = new DefaultSqlConnectionFactory(sqlConnectionStringProvider);
var schemaManagerDataStore = new SchemaManagerDataStore(sqlConnectionFactory);
_schemaUpgradeRunner = new SchemaUpgradeRunner(scriptProvider, baseScriptProvider, NullLogger <SchemaUpgradeRunner> .Instance, sqlConnectionFactory, schemaManagerDataStore);
_schemaInitializer = new SchemaInitializer(config, _schemaUpgradeRunner, schemaInformation, sqlConnectionFactory, sqlConnectionStringProvider, mediator, NullLogger <SchemaInitializer> .Instance);
_searchParameterDefinitionManager = new SearchParameterDefinitionManager(ModelInfoProvider.Instance, _mediator);
_filebasedSearchParameterStatusDataStore = new FilebasedSearchParameterStatusDataStore(_searchParameterDefinitionManager, ModelInfoProvider.Instance);
var securityConfiguration = new SecurityConfiguration {
PrincipalClaims = { "oid" }
};
var sqlServerFhirModel = new SqlServerFhirModel(
schemaInformation,
_searchParameterDefinitionManager,
() => _filebasedSearchParameterStatusDataStore,
Options.Create(securityConfiguration),
sqlConnectionStringProvider,
Substitute.For <IMediator>(),
NullLogger <SqlServerFhirModel> .Instance);
var searchParameterToSearchValueTypeMap = new SearchParameterToSearchValueTypeMap();
var serviceCollection = new ServiceCollection();
serviceCollection.AddSqlServerTableRowParameterGenerators();
serviceCollection.AddSingleton(sqlServerFhirModel);
serviceCollection.AddSingleton <ISqlServerFhirModel>(sqlServerFhirModel);
serviceCollection.AddSingleton(searchParameterToSearchValueTypeMap);
ServiceProvider serviceProvider = serviceCollection.BuildServiceProvider();
var upsertResourceTvpGeneratorV6 = serviceProvider.GetRequiredService <V6.UpsertResourceTvpGenerator <ResourceMetadata> >();
var upsertResourceTvpGeneratorV7 = serviceProvider.GetRequiredService <V7.UpsertResourceTvpGenerator <ResourceMetadata> >();
var upsertResourceTvpGeneratorVLatest = serviceProvider.GetRequiredService <VLatest.UpsertResourceTvpGenerator <IReadOnlyList <ResourceWrapper> > >();
var upsertSearchParamsTvpGenerator = serviceProvider.GetRequiredService <VLatest.UpsertSearchParamsTvpGenerator <List <ResourceSearchParameterStatus> > >();
var reindexResourceTvpGenerator = serviceProvider.GetRequiredService <VLatest.ReindexResourceTvpGenerator <IReadOnlyList <ResourceWrapper> > >();
var bulkReindexResourceTvpGenerator = serviceProvider.GetRequiredService <VLatest.BulkReindexResourcesTvpGenerator <IReadOnlyList <ResourceWrapper> > >();
_supportedSearchParameterDefinitionManager = new SupportedSearchParameterDefinitionManager(_searchParameterDefinitionManager);
SqlTransactionHandler = new SqlTransactionHandler();
SqlConnectionWrapperFactory = new SqlConnectionWrapperFactory(SqlTransactionHandler, new SqlCommandWrapperFactory(), sqlConnectionFactory);
SqlServerSearchParameterStatusDataStore = new SqlServerSearchParameterStatusDataStore(
() => SqlConnectionWrapperFactory.CreateMockScope(),
upsertSearchParamsTvpGenerator,
() => _filebasedSearchParameterStatusDataStore,
schemaInformation,
new SqlServerSortingValidator(schemaInformation),
sqlServerFhirModel);
IOptions <CoreFeatureConfiguration> options = Options.Create(new CoreFeatureConfiguration());
_fhirDataStore = new SqlServerFhirDataStore(
sqlServerFhirModel,
searchParameterToSearchValueTypeMap,
upsertResourceTvpGeneratorV6,
upsertResourceTvpGeneratorV7,
upsertResourceTvpGeneratorVLatest,
reindexResourceTvpGenerator,
bulkReindexResourceTvpGenerator,
options,
SqlConnectionWrapperFactory,
NullLogger <SqlServerFhirDataStore> .Instance,
schemaInformation);
_fhirOperationDataStore = new SqlServerFhirOperationDataStore(SqlConnectionWrapperFactory, NullLogger <SqlServerFhirOperationDataStore> .Instance);
var fhirRequestContextAccessor = Substitute.For <RequestContextAccessor <IFhirRequestContext> >();
fhirRequestContextAccessor.RequestContext.CorrelationId.Returns(Guid.NewGuid().ToString());
var searchableSearchParameterDefinitionManager = new SearchableSearchParameterDefinitionManager(_searchParameterDefinitionManager, fhirRequestContextAccessor);
var searchParameterExpressionParser = new SearchParameterExpressionParser(new ReferenceSearchValueParser(fhirRequestContextAccessor));
var expressionParser = new ExpressionParser(() => searchableSearchParameterDefinitionManager, searchParameterExpressionParser);
_searchParameterDefinitionManager.StartAsync(CancellationToken.None);
var searchOptionsFactory = new SearchOptionsFactory(
expressionParser,
() => searchableSearchParameterDefinitionManager,
options,
fhirRequestContextAccessor,
Substitute.For <ISortingValidator>(),
NullLogger <SearchOptionsFactory> .Instance);
var searchParamTableExpressionQueryGeneratorFactory = new SearchParamTableExpressionQueryGeneratorFactory(searchParameterToSearchValueTypeMap);
var sqlRootExpressionRewriter = new SqlRootExpressionRewriter(searchParamTableExpressionQueryGeneratorFactory);
var chainFlatteningRewriter = new ChainFlatteningRewriter(searchParamTableExpressionQueryGeneratorFactory);
var sortRewriter = new SortRewriter(searchParamTableExpressionQueryGeneratorFactory);
var partitionEliminationRewriter = new PartitionEliminationRewriter(sqlServerFhirModel, schemaInformation, () => searchableSearchParameterDefinitionManager);
_searchService = new SqlServerSearchService(
searchOptionsFactory,
_fhirDataStore,
sqlServerFhirModel,
sqlRootExpressionRewriter,
chainFlatteningRewriter,
sortRewriter,
partitionEliminationRewriter,
SqlConnectionWrapperFactory,
schemaInformation,
fhirRequestContextAccessor,
() => searchableSearchParameterDefinitionManager,
NullLogger <SqlServerSearchService> .Instance);
ISearchParameterSupportResolver searchParameterSupportResolver = Substitute.For <ISearchParameterSupportResolver>();
searchParameterSupportResolver.IsSearchParameterSupported(Arg.Any <SearchParameterInfo>()).Returns((true, false));
_searchParameterStatusManager = new SearchParameterStatusManager(
SqlServerSearchParameterStatusDataStore,
_searchParameterDefinitionManager,
searchParameterSupportResolver,
mediator);
_testHelper = new SqlServerFhirStorageTestHelper(initialConnectionString, MasterDatabaseName, sqlServerFhirModel, sqlConnectionFactory);
}
public SqlServerFhirStorageTestsFixture()
{
var initialConnectionString = Environment.GetEnvironmentVariable("SqlServer:ConnectionString") ?? LocalDatabase.DefaultConnectionString;
_databaseName = $"FHIRINTEGRATIONTEST_{DateTimeOffset.UtcNow.ToUnixTimeSeconds()}_{BigInteger.Abs(new BigInteger(Guid.NewGuid().ToByteArray()))}";
_masterConnectionString = new SqlConnectionStringBuilder(initialConnectionString)
{
InitialCatalog = "master"
}.ToString();
TestConnectionString = new SqlConnectionStringBuilder(initialConnectionString)
{
InitialCatalog = _databaseName
}.ToString();
using (var connection = new SqlConnection(_masterConnectionString))
{
connection.Open();
using (SqlCommand command = connection.CreateCommand())
{
command.CommandTimeout = 600;
command.CommandText = $"CREATE DATABASE {_databaseName}";
command.ExecuteNonQuery();
}
}
var config = new SqlServerDataStoreConfiguration {
ConnectionString = TestConnectionString, Initialize = true
};
var schemaUpgradeRunner = new SchemaUpgradeRunner(config);
var schemaInformation = new SchemaInformation();
var schemaInitializer = new SchemaInitializer(config, schemaUpgradeRunner, schemaInformation, NullLogger <SchemaInitializer> .Instance);
schemaInitializer.Start();
var searchParameterDefinitionManager = Substitute.For <ISearchParameterDefinitionManager>();
searchParameterDefinitionManager.AllSearchParameters.Returns(new[]
{
new SearchParameter {
Id = SearchParameterNames.Id, Url = SearchParameterNames.IdUri.ToString()
},
new SearchParameter {
Id = SearchParameterNames.LastUpdated, Url = SearchParameterNames.LastUpdatedUri.ToString()
},
});
var securityConfiguration = new SecurityConfiguration {
PrincipalClaims = { "oid" }
};
var sqlServerFhirModel = new SqlServerFhirModel(config, schemaInformation, searchParameterDefinitionManager, Options.Create(securityConfiguration), NullLogger <SqlServerFhirModel> .Instance);
var serviceCollection = new ServiceCollection();
serviceCollection.AddSqlServerTableRowParameterGenerators();
serviceCollection.AddSingleton(sqlServerFhirModel);
ServiceProvider serviceProvider = serviceCollection.BuildServiceProvider();
var upsertResourceTvpGenerator = serviceProvider.GetRequiredService <V1.UpsertResourceTvpGenerator <ResourceMetadata> >();
var searchParameterToSearchValueTypeMap = new SearchParameterToSearchValueTypeMap(searchParameterDefinitionManager);
_fhirDataStore = new SqlServerFhirDataStore(config, sqlServerFhirModel, searchParameterToSearchValueTypeMap, upsertResourceTvpGenerator, NullLogger <SqlServerFhirDataStore> .Instance);
_testHelper = new SqlServerFhirStorageTestHelper(TestConnectionString);
}
public ResourceHandlerTests()
{
_fhirDataStore = Substitute.For <IFhirDataStore>();
_conformanceProvider = Substitute.For <ConformanceProviderBase>();
_searchService = Substitute.For <ISearchService>();
// TODO: FhirRepository instantiate ResourceDeserializer class directly
// which will try to deserialize the raw resource. We should mock it as well.
_rawResourceFactory = Substitute.For <RawResourceFactory>(new FhirJsonSerializer());
_resourceWrapperFactory = Substitute.For <IResourceWrapperFactory>();
_resourceWrapperFactory
.Create(Arg.Any <ResourceElement>(), Arg.Any <bool>(), Arg.Any <bool>())
.Returns(x => CreateResourceWrapper(x.ArgAt <ResourceElement>(0), x.ArgAt <bool>(1)));
_conformanceStatement = CapabilityStatementMock.GetMockedCapabilityStatement();
CapabilityStatementMock.SetupMockResource(_conformanceStatement, ResourceType.Observation, null);
var observationResource = _conformanceStatement.Rest.First().Resource.Find(x => x.Type == ResourceType.Observation);
observationResource.ReadHistory = false;
observationResource.UpdateCreate = true;
observationResource.ConditionalCreate = true;
observationResource.ConditionalUpdate = true;
observationResource.ConditionalDelete = CapabilityStatement.ConditionalDeleteStatus.Single;
observationResource.Versioning = CapabilityStatement.ResourceVersionPolicy.Versioned;
CapabilityStatementMock.SetupMockResource(_conformanceStatement, ResourceType.Patient, null);
var patientResource = _conformanceStatement.Rest.First().Resource.Find(x => x.Type == ResourceType.Patient);
patientResource.ReadHistory = true;
patientResource.UpdateCreate = true;
patientResource.ConditionalCreate = true;
patientResource.ConditionalUpdate = true;
observationResource.ConditionalDelete = CapabilityStatement.ConditionalDeleteStatus.Single;
patientResource.Versioning = CapabilityStatement.ResourceVersionPolicy.VersionedUpdate;
_conformanceProvider.GetCapabilityStatementOnStartup().Returns(_conformanceStatement.ToTypedElement().ToResourceElement());
var lazyConformanceProvider = new Lazy <IConformanceProvider>(() => _conformanceProvider);
var collection = new ServiceCollection();
// an auth service that allows all.
_authorizationService = Substitute.For <IAuthorizationService <DataActions> >();
_authorizationService.CheckAccess(Arg.Any <DataActions>(), Arg.Any <CancellationToken>()).Returns(ci => ci.Arg <DataActions>());
var referenceResolver = new ResourceReferenceResolver(_searchService, new TestQueryStringParser());
_resourceIdProvider = new ResourceIdProvider();
collection.Add(x => _mediator).Singleton().AsSelf();
collection.Add(x => new CreateResourceHandler(_fhirDataStore, lazyConformanceProvider, _resourceWrapperFactory, _resourceIdProvider, referenceResolver, _authorizationService)).Singleton().AsSelf().AsImplementedInterfaces();
collection.Add(x => new UpsertResourceHandler(_fhirDataStore, lazyConformanceProvider, _resourceWrapperFactory, _resourceIdProvider, _authorizationService, ModelInfoProvider.Instance)).Singleton().AsSelf().AsImplementedInterfaces();
collection.Add(x => new ConditionalCreateResourceHandler(_fhirDataStore, lazyConformanceProvider, _resourceWrapperFactory, _searchService, x.GetService <IMediator>(), _resourceIdProvider, _authorizationService)).Singleton().AsSelf().AsImplementedInterfaces();
collection.Add(x => new ConditionalUpsertResourceHandler(_fhirDataStore, lazyConformanceProvider, _resourceWrapperFactory, _searchService, x.GetService <IMediator>(), _resourceIdProvider, _authorizationService)).Singleton().AsSelf().AsImplementedInterfaces();
collection.Add(x => new ConditionalDeleteResourceHandler(_fhirDataStore, lazyConformanceProvider, _resourceWrapperFactory, _searchService, x.GetService <IMediator>(), _resourceIdProvider, _authorizationService)).Singleton().AsSelf().AsImplementedInterfaces();
collection.Add(x => new GetResourceHandler(_fhirDataStore, lazyConformanceProvider, _resourceWrapperFactory, _resourceIdProvider, _authorizationService)).Singleton().AsSelf().AsImplementedInterfaces();
collection.Add(x => new DeleteResourceHandler(_fhirDataStore, lazyConformanceProvider, _resourceWrapperFactory, _resourceIdProvider, _authorizationService)).Singleton().AsSelf().AsImplementedInterfaces();
ServiceProvider provider = collection.BuildServiceProvider();
_mediator = new Mediator(type => provider.GetService(type));
_deserializer = new ResourceDeserializer(
(FhirResourceFormat.Json, new Func <string, string, DateTimeOffset, ResourceElement>((str, version, lastUpdated) => _fhirJsonParser.Parse(str).ToResourceElement())));
}
public CreateOrUpdateSearchParameterBehavior(ISearchParameterOperations searchParameterOperations, IFhirDataStore fhirDataStore)
{
EnsureArg.IsNotNull(searchParameterOperations, nameof(searchParameterOperations));
EnsureArg.IsNotNull(fhirDataStore, nameof(fhirDataStore));
_searchParameterOperations = searchParameterOperations;
_fhirDataStore = fhirDataStore;
}
public CreateExportRequestHandler(IFhirDataStore dataStore)
{
EnsureArg.IsNotNull(dataStore, nameof(dataStore));
_fhirDataStore = dataStore;
}
public SqlServerFhirStorageTestsFixture()
{
var initialConnectionString = Environment.GetEnvironmentVariable("SqlServer:ConnectionString") ?? LocalConnectionString;
_databaseName = $"FHIRINTEGRATIONTEST_{DateTimeOffset.UtcNow.ToUnixTimeSeconds()}_{BigInteger.Abs(new BigInteger(Guid.NewGuid().ToByteArray()))}";
TestConnectionString = new SqlConnectionStringBuilder(initialConnectionString)
{
InitialCatalog = _databaseName
}.ToString();
var schemaOptions = new SqlServerSchemaOptions {
AutomaticUpdatesEnabled = true
};
var config = new SqlServerDataStoreConfiguration {
ConnectionString = TestConnectionString, Initialize = true, SchemaOptions = schemaOptions
};
var schemaInformation = new SchemaInformation(SchemaVersionConstants.Min, SchemaVersionConstants.Max);
var scriptProvider = new ScriptProvider <SchemaVersion>();
var baseScriptProvider = new BaseScriptProvider();
var mediator = Substitute.For <IMediator>();
var sqlConnectionFactory = new DefaultSqlConnectionFactory(config);
var schemaUpgradeRunner = new SchemaUpgradeRunner(scriptProvider, baseScriptProvider, mediator, NullLogger <SchemaUpgradeRunner> .Instance, sqlConnectionFactory);
_schemaInitializer = new SchemaInitializer(config, schemaUpgradeRunner, schemaInformation, sqlConnectionFactory, NullLogger <SchemaInitializer> .Instance);
var searchParameterDefinitionManager = new SearchParameterDefinitionManager(ModelInfoProvider.Instance);
_filebasedSearchParameterStatusDataStore = new FilebasedSearchParameterStatusDataStore(searchParameterDefinitionManager, ModelInfoProvider.Instance);
var securityConfiguration = new SecurityConfiguration {
PrincipalClaims = { "oid" }
};
var sqlServerFhirModel = new SqlServerFhirModel(
config,
schemaInformation,
searchParameterDefinitionManager,
() => _filebasedSearchParameterStatusDataStore,
Options.Create(securityConfiguration),
NullLogger <SqlServerFhirModel> .Instance);
var serviceCollection = new ServiceCollection();
serviceCollection.AddSqlServerTableRowParameterGenerators();
serviceCollection.AddSingleton(sqlServerFhirModel);
ServiceProvider serviceProvider = serviceCollection.BuildServiceProvider();
var upsertResourceTvpGenerator = serviceProvider.GetRequiredService <VLatest.UpsertResourceTvpGenerator <ResourceMetadata> >();
var upsertSearchParamsTvpGenerator = serviceProvider.GetRequiredService <VLatest.UpsertSearchParamsTvpGenerator <List <ResourceSearchParameterStatus> > >();
var searchParameterToSearchValueTypeMap = new SearchParameterToSearchValueTypeMap();
SqlTransactionHandler = new SqlTransactionHandler();
SqlConnectionWrapperFactory = new SqlConnectionWrapperFactory(SqlTransactionHandler, new SqlCommandWrapperFactory(), sqlConnectionFactory);
SqlServerSearchParameterStatusDataStore = new SqlServerSearchParameterStatusDataStore(
() => SqlConnectionWrapperFactory.CreateMockScope(),
upsertSearchParamsTvpGenerator,
() => _filebasedSearchParameterStatusDataStore,
schemaInformation);
_fhirDataStore = new SqlServerFhirDataStore(config, sqlServerFhirModel, searchParameterToSearchValueTypeMap, upsertResourceTvpGenerator, Options.Create(new CoreFeatureConfiguration()), SqlConnectionWrapperFactory, NullLogger <SqlServerFhirDataStore> .Instance, schemaInformation);
_fhirOperationDataStore = new SqlServerFhirOperationDataStore(SqlConnectionWrapperFactory, NullLogger <SqlServerFhirOperationDataStore> .Instance);
_testHelper = new SqlServerFhirStorageTestHelper(initialConnectionString, MasterDatabaseName, searchParameterDefinitionManager, sqlServerFhirModel, sqlConnectionFactory);
}
public PostgresqlSearchService(
ISearchOptionsFactory searchOptionsFactory,
IFhirDataStore fhirDataStore)
: base(searchOptionsFactory, fhirDataStore)
{
}
public DeleteSearchParameterBehavior(ISearchParameterUtilities searchParameterUtilities, IFhirDataStore fhirDataStore)
{
EnsureArg.IsNotNull(searchParameterUtilities, nameof(searchParameterUtilities));
EnsureArg.IsNotNull(fhirDataStore, nameof(fhirDataStore));
_searchParameterUtilities = searchParameterUtilities;
_fhirDataStore = fhirDataStore;
}
/// <summary>
/// Initializes a new instance of the <see cref="SearchService"/> class.
/// </summary>
/// <param name="searchOptionsFactory">The search options factory.</param>
/// <param name="bundleFactory">The bundle factory</param>
/// <param name="fhirDataStore">The data store</param>
protected SearchService(ISearchOptionsFactory searchOptionsFactory, IBundleFactory bundleFactory, IFhirDataStore fhirDataStore)
{
EnsureArg.IsNotNull(searchOptionsFactory, nameof(searchOptionsFactory));
_searchOptionsFactory = searchOptionsFactory;
_bundleFactory = bundleFactory;
_fhirDataStore = fhirDataStore;
}
public async Task InitializeAsync()
{
var fhirStoredProcs = typeof(IStoredProcedure).Assembly
.GetTypes()
.Where(x => !x.IsAbstract && typeof(IStoredProcedure).IsAssignableFrom(x))
.ToArray()
.Select(type => (IStoredProcedure)Activator.CreateInstance(type));
var optionsMonitor = Substitute.For <IOptionsMonitor <CosmosCollectionConfiguration> >();
optionsMonitor.Get(CosmosDb.Constants.CollectionConfigurationName).Returns(_cosmosCollectionConfiguration);
var searchParameterDefinitionManager = new SearchParameterDefinitionManager(ModelInfoProvider.Instance);
searchParameterDefinitionManager.Start();
_filebasedSearchParameterRegistry = new FilebasedSearchParameterRegistry(searchParameterDefinitionManager, ModelInfoProvider.Instance);
var updaters = new ICollectionUpdater[]
{
new FhirCollectionSettingsUpdater(_cosmosDataStoreConfiguration, optionsMonitor, NullLogger <FhirCollectionSettingsUpdater> .Instance),
new StoredProcedureInstaller(fhirStoredProcs),
new CosmosDbStatusRegistryInitializer(
() => _filebasedSearchParameterRegistry,
new CosmosQueryFactory(
new CosmosResponseProcessor(Substitute.For <IFhirRequestContextAccessor>(), Substitute.For <IMediator>(), NullLogger <CosmosResponseProcessor> .Instance),
NullFhirCosmosQueryLogger.Instance)),
};
var dbLock = new CosmosDbDistributedLockFactory(Substitute.For <Func <IScoped <Container> > >(), NullLogger <CosmosDbDistributedLock> .Instance);
var upgradeManager = new CollectionUpgradeManager(updaters, _cosmosDataStoreConfiguration, optionsMonitor, dbLock, NullLogger <CollectionUpgradeManager> .Instance);
ICosmosClientTestProvider testProvider = new CosmosClientReadWriteTestProvider();
var fhirRequestContextAccessor = new FhirRequestContextAccessor();
var cosmosResponseProcessor = Substitute.For <ICosmosResponseProcessor>();
var responseProcessor = new CosmosResponseProcessor(fhirRequestContextAccessor, Substitute.For <IMediator>(), NullLogger <CosmosResponseProcessor> .Instance);
var handler = new FhirCosmosResponseHandler(() => new NonDisposingScope(_container), _cosmosDataStoreConfiguration, fhirRequestContextAccessor, responseProcessor);
var documentClientInitializer = new FhirCosmosClientInitializer(testProvider, () => new[] { handler }, NullLogger <FhirCosmosClientInitializer> .Instance);
_cosmosClient = documentClientInitializer.CreateCosmosClient(_cosmosDataStoreConfiguration);
var fhirCollectionInitializer = new CollectionInitializer(_cosmosCollectionConfiguration.CollectionId, _cosmosDataStoreConfiguration, _cosmosCollectionConfiguration.InitialCollectionThroughput, upgradeManager, NullLogger <CollectionInitializer> .Instance);
// Cosmos DB emulators throws errors when multiple collections are initialized concurrently.
// Use the semaphore to only allow one initialization at a time.
await CollectionInitializationSemaphore.WaitAsync();
try
{
await documentClientInitializer.InitializeDataStore(_cosmosClient, _cosmosDataStoreConfiguration, new List <ICollectionInitializer> {
fhirCollectionInitializer
});
_container = documentClientInitializer.CreateFhirContainer(_cosmosClient, _cosmosDataStoreConfiguration.DatabaseId, _cosmosCollectionConfiguration.CollectionId);
}
finally
{
CollectionInitializationSemaphore.Release();
}
var cosmosDocumentQueryFactory = new CosmosQueryFactory(cosmosResponseProcessor, NullFhirCosmosQueryLogger.Instance);
var documentClient = new NonDisposingScope(_container);
_fhirDataStore = new CosmosFhirDataStore(
documentClient,
_cosmosDataStoreConfiguration,
optionsMonitor,
cosmosDocumentQueryFactory,
new RetryExceptionPolicyFactory(_cosmosDataStoreConfiguration),
NullLogger <CosmosFhirDataStore> .Instance,
new VersionSpecificModelInfoProvider(),
Options.Create(new CoreFeatureConfiguration()));
_fhirOperationDataStore = new CosmosFhirOperationDataStore(
documentClient,
_cosmosDataStoreConfiguration,
optionsMonitor,
new RetryExceptionPolicyFactory(_cosmosDataStoreConfiguration),
new CosmosQueryFactory(responseProcessor, new NullFhirCosmosQueryLogger()),
NullLogger <CosmosFhirOperationDataStore> .Instance);
_fhirStorageTestHelper = new CosmosDbFhirStorageTestHelper(
_container,
_cosmosDataStoreConfiguration.DatabaseId,
_cosmosCollectionConfiguration.CollectionId);
}
public TestSearchService(ISearchOptionsFactory searchOptionsFactory, IFhirDataStore fhirDataStore)
: base(searchOptionsFactory, fhirDataStore)
{
SearchImplementation = options => null;
}
public TestSearchService(ISearchOptionsFactory searchOptionsFactory, IFhirDataStore fhirDataStore, IModelInfoProvider modelInfoProvider)
: base(searchOptionsFactory, fhirDataStore, modelInfoProvider)
{
SearchImplementation = options => null;
}
